genome.fa.s3.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  136  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44365048--44365093	23	2.0	23	95	0	83	36	13	23	26	1.91
44365610--44365642	15	2.2	15	100	0	66	45	0	24	30	1.53
44376732--44376799	16	4.2	16	90	0	109	29	0	35	35	1.58
44377048--44377167	17	7.2	17	65	22	58	55	0	1	41	1.15
44377065--44377113	24	2.1	22	85	14	64	55	0	2	42	1.11
44377084--44377139	15	4.0	15	73	17	57	55	0	0	44	0.99
44377094--44377156	26	2.5	25	82	10	83	58	1	0	39	1.07
44381747--44382011	47	5.6	49	95	3	456	33	7	28	30	1.85
44382130--44382208	37	2.1	37	90	0	122	24	18	31	25	1.98
44383877--44384082	103	2.0	104	92	1	342	39	6	17	36	1.76
44387071--44387134	29	2.1	30	94	5	112	34	10	9	45	1.72
44393109--44393134	9	2.9	9	100	0	52	65	23	0	11	1.25
44394190--44394270	26	3.1	26	92	0	144	33	11	3	51	1.55
44394504--44394542	14	2.9	14	88	3	62	0	25	0	74	0.82
44399071--44399165	18	5.3	18	73	14	79	37	14	11	35	1.83
44399339--44399487	45	3.3	45	91	0	237	41	20	19	18	1.90
44401033--44401082	5	10.2	5	95	4	93	62	0	0	38	0.96
44401038--44401125	24	3.5	25	76	14	92	57	2	1	38	1.18
44401102--44401130	8	3.6	8	100	0	58	62	0	0	37	0.96
44401040--44401128	19	4.7	19	70	23	64	58	2	1	38	1.18
44405100--44405229	52	2.5	51	83	2	163	33	25	14	26	1.95
44414119--44414225	55	2.0	55	94	1	189	45	8	8	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44434446--44434492	21	2.2	21	100	0	94	25	4	31	38	1.75
44440609--44440929	171	1.9	170	81	4	396	42	18	10	28	1.84
44442059--44442097	19	2.0	20	90	5	62	20	0	7	71	1.10
44442065--44442105	19	2.2	19	86	8	57	21	0	7	70	1.11
44442078--44442123	25	1.9	23	86	8	65	30	0	6	63	1.20
44442648--44442677	15	2.0	15	100	0	60	33	0	0	66	0.92
44443137--44443180	23	2.0	22	81	4	52	56	0	0	43	0.99
44447429--44447454	13	2.0	13	100	0	52	46	15	30	7	1.74
44451166--44451200	16	2.2	16	100	0	70	42	8	37	11	1.72
44453037--44453066	16	1.9	15	93	6	51	33	23	0	43	1.54
44453266--44453555	50	5.8	50	79	3	269	31	26	16	24	1.96
44453327--44453508	101	1.8	101	90	0	292	29	25	18	26	1.98
44453270--44453555	151	1.9	151	87	2	421	31	26	16	24	1.96
44456983--44457070	45	2.0	45	93	0	149	39	27	10	22	1.86
44458627--44458678	3	17.7	3	92	4	88	30	1	0	67	1.02
44459228--44459276	25	2.0	25	84	8	64	36	0	8	55	1.30
44463203--44463256	19	2.8	20	91	2	83	20	20	22	37	1.95
44474088--44474169	28	2.9	28	92	0	137	40	19	9	30	1.84
44477249--44477451	55	3.8	54	74	10	166	22	6	29	41	1.79
44477279--44477484	55	3.8	55	74	13	158	22	7	26	43	1.80
44477381--44477491	53	2.1	53	81	3	123	19	9	31	39	1.83
44479667--44479747	32	2.6	30	77	11	81	25	14	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44485678--44485744	34	2.0	34	87	0	98	29	5	22	41	1.77
44486912--44486969	20	2.8	20	82	12	55	25	3	24	46	1.68
44486929--44486969	20	2.0	20	86	9	57	24	2	24	48	1.63
44514192--44514249	30	1.9	30	86	6	82	25	31	24	18	1.98
44518607--44518810	102	2.0	102	98	0	390	27	5	23	43	1.77
44519181--44519238	27	2.1	28	87	3	82	20	15	15	48	1.81
44528564--44528593	11	2.7	11	94	0	51	16	40	10	33	1.82
44530647--44530731	42	2.0	42	88	0	125	34	25	14	25	1.94
44534382--44534984	144	4.2	144	83	6	620	28	17	28	26	1.97
44534382--44534989	48	12.7	48	75	8	454	28	17	28	26	1.97
44536202--44536251	21	2.4	21	96	0	91	14	26	32	28	1.94
44539270--44539437	48	3.5	48	81	3	187	26	14	32	27	1.95
44542161--44542211	21	2.4	21	76	0	57	31	35	13	19	1.91
44545561--44545662	53	1.9	53	85	0	141	16	26	21	35	1.95
44559618--44559675	25	2.3	25	96	3	107	36	12	13	37	1.82
44565129--44565442	40	7.7	40	84	8	411	26	27	22	23	2.00
44565129--44565442	83	3.9	82	90	3	460	26	27	22	23	2.00
44565129--44565442	123	2.6	121	86	7	415	26	27	22	23	2.00
44573628--44573941	40	7.7	40	83	9	386	27	28	20	22	1.99
44573628--44573941	83	3.9	83	88	5	414	27	28	20	22	1.99
44573628--44573941	123	2.6	121	84	10	399	27	28	20	22	1.99
44576396--44576432	17	2.2	17	100	0	74	59	13	5	21	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44580633--44580726	6	15.3	6	72	16	77	47	12	18	21	1.81
44580642--44580726	37	2.3	37	85	0	116	48	11	18	21	1.80
44581248--44581494	27	9.3	27	83	2	266	25	19	18	36	1.94
44581249--44581486	53	4.5	54	81	2	241	25	20	17	36	1.94
44581252--44581491	80	3.0	81	84	3	274	25	20	17	36	1.94
44581252--44581494	107	2.3	106	84	4	321	25	19	17	37	1.94
44581476--44582305	27	30.7	27	83	0	872	31	8	20	39	1.83
44581313--44581518	107	1.9	107	82	5	256	26	18	19	35	1.95
44581479--44582305	54	15.3	54	86	0	1035	31	8	20	39	1.82
44584286--44584320	18	1.9	18	100	0	70	31	22	0	45	1.53
44584662--44584688	7	3.9	7	100	0	54	59	0	14	25	1.36
44589478--44589512	15	2.2	16	90	5	54	37	5	14	42	1.69
44600285--44600546	40	6.6	40	87	3	316	24	20	27	27	1.99
44600285--44600546	79	3.3	78	87	3	328	24	20	27	27	1.99
44600324--44600581	79	3.3	80	85	3	247	25	20	27	25	1.99
44608192--44608454	40	6.6	40	88	3	325	24	20	27	26	1.99
44608231--44608489	80	3.3	80	85	3	256	25	20	27	25	1.99
44611545--44611577	13	2.6	13	90	4	50	48	12	0	39	1.40
44612711--44612830	56	2.1	56	98	0	231	45	9	23	22	1.81
44613961--44614185	40	5.7	40	87	5	296	24	21	27	26	1.99
44613961--44614218	119	2.2	119	81	6	292	25	21	27	25	1.99
44617616--44617695	6	14.8	5	71	23	56	73	2	5	18	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44621419--44621565	48	3.1	48	87	0	222	36	5	25	31	1.79
44621517--44621600	35	2.4	35	89	0	123	41	8	22	27	1.82
44621472--44621648	83	2.1	83	89	0	264	38	6	24	29	1.81
44621555--44622511	48	19.9	48	91	0	1473	36	6	25	31	1.82
44622652--44622754	37	2.8	38	94	2	174	24	18	32	25	1.97
44623959--44624324	40	9.1	40	90	0	525	25	21	27	25	2.00
44624093--44624159	23	3.2	23	60	24	56	25	23	26	23	2.00
44623964--44624310	120	2.9	120	94	0	586	25	22	27	24	2.00
44627989--44628858	48	18.0	48	89	0	1308	35	6	26	31	1.82
44628999--44629101	37	2.8	37	93	0	179	23	19	31	26	1.98
44632564--44632734	93	1.8	93	89	0	270	21	19	28	30	1.97
44632568--44632785	46	4.7	46	79	9	237	21	20	28	29	1.98
44658231--44658398	40	4.2	40	82	8	148	27	27	20	24	1.99
44658266--44658451	80	2.3	80	83	9	229	27	27	20	23	1.99
44658268--44658451	40	4.6	40	83	7	205	27	27	21	23	1.99
44666186--44666353	40	4.2	40	82	8	148	27	27	20	24	1.99
44666221--44666399	80	2.2	80	83	10	224	28	26	20	24	1.99
44666223--44666353	40	3.3	40	89	2	201	28	27	20	23	1.99
44666226--44666403	40	4.4	40	83	6	157	26	28	20	24	1.99
44668481--44668594	56	2.0	56	91	3	185	23	0	12	63	1.34
44674148--44674341	22	9.0	22	76	11	127	34	21	23	21	1.97
44674170--44674341	44	3.9	44	75	7	179	34	20	21	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44674173--44674342	88	1.9	88	85	7	238	34	21	20	22	1.97
44674170--44674333	66	2.5	66	77	5	170	34	21	21	21	1.97
44679116--44679173	29	2.0	29	96	0	107	29	34	10	25	1.89
44680199--44680280	25	3.3	25	80	13	105	31	21	23	23	1.98
44682637--44682690	16	3.4	16	73	0	63	31	27	3	37	1.75
44686112--44686528	208	2.0	208	98	0	807	23	12	34	29	1.92
44694080--44694108	14	2.0	15	93	6	51	31	0	0	68	0.89
44695329--44695423	37	2.6	37	88	1	129	29	8	9	52	1.63
44696130--44696178	25	2.0	25	84	8	64	48	2	26	22	1.61
44698716--44698941	49	4.6	49	78	6	258	31	26	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333