Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  318  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103929474--103929516
18
2.3
19
92
4
70
25
9
11
53
1.67
103931277--103931324
16
3.1
15
90
6
69
64
2
2
31
1.16
103931273--103931324
8
6.5
8
82
8
61
65
1
1
30
1.14
103931272--103931328
24
2.4
24
79
5
71
64
1
3
29
1.20
103931436--103931489
23
2.5
22
75
13
60
57
5
5
31
1.45
103931452--103931537
25
3.7
24
79
10
81
55
5
6
31
1.50
103931558--103931690
25
5.5
24
71
12
96
60
1
3
34
1.24
103932171--103932346
30
5.8
30
89
1
271
22
3
48
25
1.68
103932171--103932346
61
2.9
60
94
1
307
22
3
48
25
1.68
103933054--103933087
14
2.4
14
85
0
50
67
5
14
11
1.39
103932950--103933160
106
2.0
106
86
1
298
44
17
16
22
1.86
103933103--103933456
73
4.7
73
82
6
440
32
22
16
29
1.95
103933066--103933460
75
5.3
73
80
7
418
34
21
16
28
1.95
103933069--103933456
152
2.6
152
82
7
451
34
21
16
28
1.95
103933406--103933513
54
2.0
55
88
1
164
37
19
13
28
1.90
103933337--103933717
128
3.0
127
84
5
525
35
20
14
28
1.93
103933592--103933769
75
2.4
74
87
2
259
31
23
15
30
1.95
103933592--103934158
73
7.5
74
77
12
551
32
21
16
29
1.95
103933779--103933806
14
2.0
14
100
0
56
57
7
21
14
1.61
103933788--103934157
147
2.5
145
87
4
519
32
21
17
28
1.96
103934176--103934392
99
2.2
99
90
4
330
42
17
17
23
1.89
103934345--103934406
14
4.6
14
90
6
92
62
6
14
16
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103934345--103934406
27
2.3
28
86
5
92
62
6
14
16
1.50
103934247--103934474
114
2.0
114
88
0
339
42
17
17
23
1.89
103934386--103934554
73
2.3
74
85
2
223
33
20
17
28
1.95
103956696--103956726
14
2.2
14
100
0
62
12
29
0
58
1.35
103961098--103961132
18
1.9
18
88
11
54
22
20
0
57
1.41
103965098--103965194
30
3.2
30
75
2
106
28
15
26
28
1.96
103967054--103967084
12
2.6
12
100
0
62
25
16
12
45
1.83
103967144--103967193
6
8.2
6
83
16
59
0
20
2
78
0.86
103967130--103967176
15
3.1
15
84
3
58
2
21
2
74
1.03
103967130--103967189
31
1.9
32
86
3
86
1
20
1
76
0.96
103967147--103967187
21
2.0
21
95
0
73
0
21
2
75
0.92
103967129--103967189
16
3.8
16
75
16
54
1
21
1
75
0.98
103970730--103970792
33
1.9
33
84
12
85
12
26
6
53
1.62
103970807--103970914
6
17.7
6
69
9
67
6
17
3
72
1.21
103970790--103970845
21
2.7
21
72
5
51
8
17
1
71
1.21
103970789--103970845
14
4.1
14
75
16
57
8
17
1
71
1.19
103970884--103970914
11
2.7
12
90
10
55
0
9
6
83
0.79
103972032--103972064
10
3.0
11
91
8
50
15
3
9
72
1.21
103974231--103974258
11
2.5
11
100
0
56
14
0
7
78
0.95
103975965--103976061
30
3.2
30
75
2
106
28
15
26
28
1.96
103978598--103978653
24
2.3
24
84
6
69
3
26
3
66
1.25
103981399--103981444
20
2.2
21
84
3
58
15
19
19
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103981406--103981453
21
2.3
20
89
3
69
12
16
20
50
1.78
103981967--103982013
20
2.3
20
81
0
58
29
34
12
23
1.92
103983519--103983602
32
2.6
31
75
5
78
73
4
14
7
1.21
103984617--103984722
48
2.2
47
85
9
135
59
1
24
14
1.45
103987952--103987998
20
2.3
20
81
0
58
29
34
12
23
1.92
103990107--103990146
19
2.1
19
85
4
53
17
30
7
45
1.76
103990896--103990948
27
2.0
26
85
3
70
52
15
11
20
1.72
103994916--103994959
14
3.1
14
83
0
52
15
40
2
40
1.60
104000553--104000592
19
2.1
19
85
0
53
25
35
17
22
1.95
104006647--104006690
14
3.1
14
83
0
52
15
40
2
40
1.60
104008332--104008379
14
3.4
14
80
8
53
75
2
18
4
1.07
104008339--104008387
15
3.2
16
80
11
59
73
2
18
6
1.14
104016714--104016761
14
3.4
14
85
0
60
43
6
31
18
1.75
104020785--104020819
10
3.5
10
84
0
52
37
22
25
14
1.92
104020784--104020822
20
2.0
20
100
0
78
38
20
25
15
1.92
104024180--104024232
11
4.6
11
86
9
70
79
7
0
13
0.93
104024277--104024344
30
2.3
31
89
5
104
73
2
13
10
1.20
104025195--104025226
15
2.1
16
94
5
57
71
0
21
6
1.07
104025335--104025379
21
2.3
18
85
11
54
55
0
26
17
1.42
104028536--104028607
32
2.3
30
86
11
101
73
1
13
11
1.16
104029459--104029490
15
2.1
16
94
5
57
71
0
21
6
1.07
104029599--104029643
21
2.3
18
85
11
54
55
0
26
17
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104033039--104033084
10
4.5
10
81
5
56
15
23
21
39
1.92
104033036--104033084
21
2.4
20
89
3
71
14
22
22
40
1.90
104033310--104033338
13
2.2
13
100
0
58
27
0
10
62
1.28
104037952--104038299
40
8.7
40
97
0
608
22
28
20
29
1.98
104046647--104046966
40
8.1
40
95
3
535
22
28
20
29
1.98
104046647--104046966
79
4.1
80
93
4
535
22
28
20
29
1.98
104059127--104059367
81
3.2
72
81
11
265
32
19
16
31
1.94
104059294--104059506
96
2.2
96
90
4
335
41
16
17
23
1.89
104059463--104059519
13
4.5
13
83
12
66
59
7
15
17
1.57
104067951--104067986
12
3.0
12
95
0
63
41
5
25
27
1.77
104069559--104069606
16
3.1
15
90
6
69
64
2
2
31
1.16
104069555--104069606
8
6.5
8
82
8
61
65
1
1
30
1.14
104069554--104069610
24
2.4
24
79
5
71
64
1
3
29
1.20
104069716--104069769
23
2.5
22
75
13
60
57
5
5
31
1.45
104069732--104069817
25
3.7
24
79
10
81
55
5
6
31
1.50
104069838--104069971
25
5.5
25
69
13
91
58
2
3
35
1.28
104069911--104069971
24
2.6
23
80
10
61
59
3
3
34
1.30
104070453--104070567
30
3.8
30
89
0
176
22
4
48
24
1.68
104070453--104070567
60
1.9
60
92
0
194
22
4
48
24
1.68
104073900--104073999
15
7.0
13
70
24
53
28
8
0
64
1.22
104073889--104073951
29
2.2
28
81
13
74
28
9
0
61
1.27
104073918--104073963
15
2.9
15
90
6
65
26
6
0
67
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104073930--104073996
21
3.0
23
76
21
72
29
5
0
64
1.17
104075113--104075296
35
5.3
35
90
0
289
28
14
27
29
1.95
104075480--104075771
35
8.4
35
86
1
354
28
13
25
32
1.94
104074942--104075660
366
2.0
366
93
0
1233
31
16
21
30
1.95
104076392--104076445
22
2.4
22
84
3
63
14
12
12
59
1.62
104078380--104078462
11
7.5
11
76
0
67
21
13
3
61
1.47
104078379--104078462
33
2.5
33
80
3
107
21
13
3
61
1.46
104080250--104080287
15
2.5
15
95
0
67
47
15
13
23
1.81
104086774--104086819
18
2.4
19
82
10
58
65
8
0
26
1.21
104086895--104086957
30
2.1
30
93
0
108
57
14
3
25
1.52
104086987--104087029
22
2.0
22
90
0
68
55
6
13
23
1.62
104087422--104087479
30
1.9
31
92
3
100
17
15
13
53
1.73
104090770--104091001
40
5.8
41
85
4
303
24
21
28
25
1.99
104090770--104091021
120
2.1
120
91
2
418
23
21
28
26
1.99
104090770--104091001
80
2.9
80
88
1
340
24
21
28
25
1.99
104092687--104092716
14
2.1
14
93
0
51
20
13
13
53
1.72
104093346--104093410
16
4.1
16
90
4
96
38
7
23
30
1.83
104093392--104093484
44
2.1
46
88
8
138
33
5
23
37
1.78
104093558--104093607
26
2.0
26
88
4
75
42
0
6
52
1.26
104098608--104098641
2
17.0
2
100
0
68
0
50
0
50
1.00
104108259--104108297
15
2.6
15
91
0
60
76
0
23
0
0.78
104109041--104109069
5
5.8
5
100
0
58
82
0
0
17
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104111867--104111950
43
2.0
43
83
9
109
25
17
28
28
1.98
104114312--104114406
39
2.5
37
79
15
106
49
0
1
49
1.07
104114320--104114406
7
13.3
7
75
16
62
48
0
1
50
1.08
104115544--104115600
29
1.9
30
89
3
89
22
17
15
43
1.87
104115588--104115639
22
2.3
23
80
9
63
15
25
17
42
1.88
104120402--104120427
11
2.4
11
100
0
52
50
7
42
0
1.31
104121090--104121144
12
4.6
12
90
0
83
34
0
7
58
1.26
104121088--104121144
18
3.2
18
89
0
87
35
0
8
56
1.31
104121090--104121142
3
17.7
3
84
0
70
35
0
5
58
1.22
104121281--104121352
24
2.9
24
80
17
76
43
0
23
33
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333