Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  322  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104635483--104635541
29
2.0
29
83
6
75
0
25
5
69
1.09
104636118--104636158
16
2.6
16
80
0
55
73
4
0
21
1.02
104636232--104636286
27
1.9
27
85
10
74
52
7
7
32
1.56
104636585--104636690
27
4.0
26
71
10
81
50
0
7
42
1.31
104636589--104636693
53
2.0
53
88
3
158
48
0
7
43
1.31
104637511--104638018
168
3.0
167
87
4
734
11
23
18
46
1.82
104642193--104642224
16
2.0
16
100
0
64
50
18
6
25
1.70
104649671--104649716
23
2.0
23
95
0
83
28
30
28
13
1.94
104649775--104649801
12
2.2
12
100
0
54
48
7
18
25
1.74
104649907--104649955
20
2.5
20
93
0
80
28
24
18
28
1.98
104652297--104652345
23
2.1
23
88
7
73
32
12
10
44
1.75
104653503--104653557
27
1.9
27
85
10
74
52
7
7
32
1.56
104653856--104653961
27
4.0
26
71
10
81
50
0
7
42
1.31
104653860--104653964
53
2.0
53
88
3
158
48
0
7
43
1.31
104654780--104655287
168
3.0
167
87
2
750
11
24
18
46
1.82
104659318--104659493
46
3.8
46
78
10
205
21
21
28
28
1.98
104659314--104659486
93
1.9
93
93
0
301
21
21
28
27
1.99
104664992--104665055
18
3.4
18
71
12
56
12
25
25
37
1.91
104667129--104667361
10
22.8
10
64
26
64
59
0
5
35
1.21
104667129--104667361
7
34.1
7
65
24
81
59
0
5
35
1.21
104667296--104667363
5
14.4
5
75
20
58
64
0
0
35
0.94
104667258--104667363
24
4.5
22
75
19
81
62
0
3
33
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104667298--104667361
19
3.3
19
79
16
69
65
0
0
34
0.93
104669674--104669742
21
3.4
21
75
18
83
14
21
20
43
1.87
104669656--104669744
39
2.3
39
94
0
151
14
22
22
40
1.90
104678054--104678608
206
2.7
206
91
1
923
28
22
18
31
1.97
104690502--104690545
22
2.0
22
83
12
56
56
6
6
29
1.51
104690698--104690859
41
3.8
40
69
23
102
58
0
6
35
1.23
104690698--104690848
44
3.5
43
71
20
109
57
0
5
36
1.23
104690864--104690931
5
13.4
5
71
20
52
64
1
0
33
1.02
104690749--104690929
7
26.4
7
65
23
66
60
0
4
34
1.21
104701141--104701196
23
2.5
22
74
5
58
37
7
8
46
1.63
104701567--104701601
13
2.7
13
83
16
54
65
5
11
17
1.43
104701648--104701681
17
2.0
17
100
0
68
52
0
29
17
1.45
104701649--104701685
17
2.2
17
95
0
65
54
0
32
13
1.40
104703308--104703458
53
2.8
53
89
4
214
25
16
27
29
1.97
104710063--104710130
35
2.0
35
88
5
104
26
7
17
48
1.73
104714496--104714539
12
3.7
12
81
0
52
65
0
9
25
1.21
104714872--104714927
27
2.1
27
93
0
94
55
7
17
19
1.65
104715536--104715583
13
3.7
13
79
17
55
6
4
10
79
1.05
104718651--104718787
69
2.0
69
98
0
265
29
21
16
32
1.95
104723948--104724016
24
2.9
24
80
8
70
50
0
4
44
1.21
104725435--104725598
46
3.6
45
77
9
129
32
16
20
31
1.94
104725499--104725630
46
2.9
45
80
6
140
30
14
21
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104725774--104725829
29
1.9
29
100
0
112
21
16
5
57
1.59
104729347--104729418
36
2.0
36
91
0
117
40
19
6
33
1.78
104734178--104734252
25
2.8
27
73
15
66
38
2
1
57
1.21
104734859--104734931
33
2.3
31
81
11
78
47
0
9
42
1.36
104735847--104735898
15
3.2
15
73
19
50
44
0
1
53
1.11
104735931--104735967
16
2.3
16
86
13
58
40
0
0
59
0.97
104735977--104736034
22
2.7
22
84
5
66
51
0
0
48
1.00
104738835--104738868
17
2.0
17
94
0
59
44
50
0
5
1.26
104743474--104743507
17
2.0
17
94
0
59
44
50
0
5
1.26
104755861--104755941
41
2.0
42
95
2
146
35
8
28
27
1.86
104772225--104772425
109
1.8
109
88
0
303
30
17
20
31
1.95
104772633--104772662
15
2.0
15
93
0
51
63
0
6
30
1.20
104772745--104772775
15
2.1
15
100
0
62
61
0
6
32
1.21
104773090--104773146
17
3.4
17
76
9
62
63
3
7
26
1.36
104773122--104773188
3
21.3
3
79
8
71
59
2
7
29
1.40
104774098--104774154
26
2.2
26
87
9
82
80
3
7
8
1.00
104774426--104774478
22
2.4
22
93
0
88
13
3
52
30
1.57
104774980--104775081
46
2.2
46
80
0
114
28
24
19
27
1.99
104774821--104775249
229
1.9
229
93
0
732
27
23
19
29
1.98
104775197--104775453
132
1.9
132
80
3
293
30
24
15
28
1.96
104775445--104776026
46
13.0
46
65
11
283
29
23
20
26
1.99
104775432--104776134
134
5.2
134
97
0
1282
29
23
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104776082--104776345
86
3.1
86
88
0
402
26
24
22
26
2.00
104780451--104780494
19
2.3
20
84
7
56
40
11
20
27
1.86
104780793--104780855
30
2.1
30
100
0
126
31
23
22
22
1.98
104782033--104782233
109
1.8
109
88
0
303
30
17
20
31
1.95
104782441--104782470
15
2.0
15
93
0
51
63
0
6
30
1.20
104782554--104782584
15
2.1
15
100
0
62
61
0
6
32
1.21
104782899--104782958
18
3.4
17
78
13
66
63
3
6
26
1.35
104782931--104783000
3
22.3
3
80
8
77
60
2
7
30
1.38
104783913--104783969
26
2.2
26
87
9
82
80
3
7
8
1.00
104784241--104784293
22
2.4
22
93
0
88
13
3
52
30
1.57
104785639--104785697
19
3.2
19
65
18
52
54
5
3
37
1.39
104801706--104801770
32
2.0
32
96
0
121
53
7
16
21
1.68
104807474--104807511
19
2.0
19
100
0
76
31
31
15
21
1.94
104810624--104810667
21
2.1
21
100
0
88
20
22
18
38
1.93
104811041--104811079
19
2.1
19
95
0
69
43
17
5
33
1.72
104816191--104816390
108
1.9
108
91
0
328
39
11
13
36
1.79
104820184--104820308
58
2.1
61
84
10
161
54
5
4
35
1.45
104827518--104827630
60
1.9
60
87
3
165
30
7
11
49
1.68
104831498--104831545
20
2.5
19
80
10
53
72
2
0
25
0.95
104845840--104845919
26
3.1
26
94
0
133
37
25
6
31
1.81
104848865--104848955
46
2.0
46
91
0
146
45
4
16
34
1.67
104849293--104849329
19
1.9
20
88
5
58
72
2
0
24
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104849357--104849487
10
13.3
10
69
14
51
59
5
1
33
1.29
104849438--104849492
21
2.5
22
85
5
76
56
7
0
36
1.27
104849972--104850205
28
8.3
26
69
16
87
34
3
1
60
1.25
104849973--104850205
9
24.9
9
70
13
107
34
3
1
60
1.25
104850058--104850218
37
4.4
37
71
19
101
33
1
1
62
1.16
104850118--104850219
27
3.8
28
74
18
90
33
1
1
62
1.17
104850191--104850242
17
2.9
17
77
16
52
26
1
1
69
1.10
104850483--104850531
26
2.0
24
84
11
64
46
6
6
40
1.53
104856562--104856652
46
2.0
46
100
0
182
35
15
7
41
1.76
104857153--104857193
14
2.7
16
85
7
59
14
7
14
63
1.50
104857402--104857531
60
2.2
59
77
4
136
45
3
20
31
1.66
104859339--104859370
4
8.0
4
100
0
64
50
0
25
25
1.50
104863233--104863274
17
2.5
17
88
7
59
54
4
7
33
1.49
104863974--104864013
14
2.8
14
92
3
62
12
7
12
67
1.41
104864236--104864350
30
3.8
30
77
6
101
46
2
21
29
1.65
104864485--104864599
3
37.7
3
79
10
99
63
7
2
26
1.35
104864826--104864880
28
2.0
28
82
7
67
49
7
10
32
1.65
104865935--104865966
3
11.3
3
87
12
50
68
0
0
31
0.90
104866100--104866136
17
2.1
18
85
14
51
64
2
5
27
1.28
104866259--104866307
24
2.0
25
84
4
64
55
6
4
34
1.44
104866414--104866459
11
4.2
11
82
0
65
54
6
2
36
1.39
104867866--104867900
9
3.9
9
88
0
52
57
0
5
37
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104871461--104871599
39
3.6
39
87
5
201
14
26
22
36
1.92
104876471--104876499
13
2.3
13
94
5
51
20
10
0
68
1.18
104878787--104878879
43
2.2
42
80
1
96
24
19
18
37
1.94
104881066--104881090
5
5.0
5
100
0
50
80
0
0
20
0.72
104881085--104881122
7
5.6
7
84
3
51
55
2
2
39
1.28
104881085--104881131
14
3.4
14
82
2
60
53
6
2
38
1.39
104884098--104884403
46
6.6
46
87
3
375
42
12
23
22
1.87
104887523--104887685
35
4.5
35
73
10
148
26
20
20
32
1.97
104887565--104887772
74
2.8
75
85
2
267
27
21
19
31
1.97
104887644--104887760
35
3.2
34
69
18
92
28
20
20
30
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333