genome.fa.s3.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  113  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36428359--36428404	22	2.1	21	84	4	56	54	4	0	41	1.20
36430743--36430804	25	2.5	25	86	0	88	19	22	22	35	1.96
36432051--36432097	17	2.8	17	90	0	76	36	21	19	23	1.95
36432294--36432407	44	2.6	44	88	0	156	30	23	21	23	1.99
36433382--36433438	30	1.9	30	89	7	89	40	7	22	29	1.80
36440970--36441037	20	3.4	20	89	0	109	13	30	35	20	1.91
36445138--36445172	10	3.4	10	84	7	52	54	0	0	45	0.99
36445363--36445400	16	2.3	17	95	4	69	26	5	13	55	1.59
36445549--36445590	20	2.1	20	86	0	57	40	7	0	52	1.29
36446245--36446297	4	13.2	4	91	0	88	50	22	1	24	1.59
36446731--36446769	2	19.5	2	100	0	78	51	0	48	0	1.00
36471192--36471409	80	2.7	79	85	4	296	27	20	25	25	1.99
36471140--36471375	40	5.9	40	86	5	302	27	21	25	25	1.99
36471192--36471436	80	3.1	80	85	4	266	28	20	25	25	1.99
36475937--36476235	40	7.5	40	88	3	399	25	28	22	23	1.99
36483228--36483450	39	5.7	40	85	8	257	24	26	22	26	2.00
36483228--36483450	79	2.8	80	83	9	255	24	26	22	26	2.00
36491184--36491406	79	2.8	78	82	9	265	24	27	22	25	2.00
36491184--36491406	39	5.7	40	86	8	266	24	27	22	25	2.00
36499164--36499386	79	2.8	78	82	9	265	24	27	22	25	2.00
36499164--36499386	39	5.7	40	86	8	266	24	27	22	25	2.00
36501575--36501675	27	3.7	27	84	5	114	18	24	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36501813--36501886	31	2.4	31	83	2	94	17	14	14	52	1.75
36515789--36515831	11	3.6	11	77	17	50	32	23	0	44	1.54
36515782--36515834	25	2.1	25	100	0	106	33	18	0	47	1.49
36528566--36528886	46	7.0	46	88	2	439	38	15	24	21	1.92
36533104--36533195	46	2.0	46	97	0	175	33	30	5	30	1.80
36534655--36534844	102	1.9	102	87	2	285	27	22	22	26	1.99
36534650--36534844	51	3.9	51	84	1	250	27	22	22	27	1.99
36536287--36536442	43	3.6	43	72	9	131	30	24	17	26	1.97
36539900--36539946	24	2.0	24	87	8	69	55	17	0	27	1.42
36546129--36546194	28	2.4	28	82	5	80	28	22	22	25	1.99
36546350--36546409	27	2.3	27	79	2	68	41	20	20	18	1.90
36551643--36551686	18	2.3	19	81	18	56	15	27	40	15	1.88
36551926--36552000	27	2.8	27	78	8	80	38	17	17	26	1.92
36552127--36552178	27	2.0	26	84	3	68	23	23	17	36	1.95
36552341--36552438	28	3.3	28	77	9	79	27	23	22	26	1.99
36555128--36555264	40	3.5	40	79	6	154	24	21	27	27	1.99
36555492--36555533	22	1.9	22	85	9	59	33	9	14	42	1.78
36563023--36563159	40	3.5	40	79	6	154	24	21	27	27	1.99
36566753--36566790	19	2.0	19	85	10	51	21	23	36	18	1.95
36567026--36567089	27	2.4	27	84	7	78	37	17	18	26	1.93
36567432--36567531	33	3.2	30	75	18	89	26	23	23	28	1.99
36567453--36567531	33	2.6	28	80	17	104	25	25	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36569490--36569606	42	2.7	41	83	9	119	24	15	24	35	1.94
36569464--36569622	43	3.7	42	79	5	158	23	16	27	33	1.96
36572087--36572179	25	3.8	25	80	9	93	33	21	15	30	1.94
36575616--36575835	40	5.5	39	81	9	216	25	23	25	25	2.00
36575616--36575835	80	2.8	80	86	5	279	25	23	25	25	2.00
36579917--36580115	51	3.9	51	89	1	301	28	27	14	29	1.95
36580139--36580256	52	2.3	52	92	0	200	27	22	14	36	1.92
36580139--36580254	24	4.4	27	81	15	145	26	22	14	36	1.93
36583879--36583927	24	1.9	26	88	12	75	48	10	4	36	1.56
36586306--36586388	25	3.3	25	75	0	103	27	21	21	28	1.99
36586306--36586420	50	2.3	50	84	0	158	26	20	23	29	1.98
36588236--36588279	22	2.0	22	100	0	88	45	13	13	27	1.81
36596145--36596196	24	2.2	24	96	0	95	21	5	32	40	1.77
36599232--36599263	15	2.0	17	88	11	50	25	0	31	43	1.55
36601003--36601033	15	2.1	15	93	0	53	35	9	25	29	1.88
36612959--36612998	20	2.0	20	100	0	80	20	10	20	50	1.76
36614884--36615059	46	3.8	46	78	10	196	21	21	28	28	1.98
36614881--36615052	93	1.8	93	92	0	290	21	21	29	27	1.99
36629436--36629480	19	2.4	19	100	0	90	26	26	20	26	1.99
36630296--36630340	2	22.5	2	86	0	63	57	42	0	0	0.98
36631898--36632155	114	2.3	114	83	3	317	38	10	30	20	1.86
36642378--36642475	40	2.4	40	82	5	115	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36645962--36646138	40	4.4	40	87	6	220	24	29	23	23	1.99
36648964--36649008	24	1.9	23	86	4	63	20	24	24	31	1.98
36654743--36654812	5	12.8	5	74	16	52	7	18	0	74	1.04
36654743--36654813	17	3.9	17	83	16	97	7	18	0	74	1.03
36654745--36654837	40	2.3	40	96	1	170	8	19	0	72	1.10
36654770--36654833	18	3.3	18	75	12	65	10	18	0	70	1.16
36654770--36654834	19	3.3	19	73	14	69	10	18	0	70	1.15
36656359--36656384	13	2.0	13	100	0	52	30	38	23	7	1.83
36657703--36657792	29	3.1	29	87	1	119	32	27	11	28	1.91
36666085--36666167	43	1.9	43	82	0	103	20	19	32	27	1.97
36667921--36667961	21	2.0	21	85	0	55	36	9	0	53	1.34
36668587--36668763	48	3.7	47	91	5	277	22	31	18	27	1.97
36668587--36668763	94	1.9	95	91	3	295	22	31	18	27	1.97
36668787--36668900	46	2.5	46	84	8	137	23	30	17	28	1.97
36671723--36671799	36	2.1	37	97	2	147	16	22	32	28	1.96
36686749--36686797	3	16.3	3	95	0	89	2	0	63	34	1.06
36687270--36687789	258	2.0	258	97	0	986	40	12	17	30	1.86
36701616--36701889	28	9.8	28	76	3	214	24	24	12	38	1.89
36714039--36714454	213	2.0	213	94	0	733	36	17	7	37	1.79
36716344--36716759	213	2.0	213	93	0	715	35	18	8	37	1.81
36725636--36725661	13	2.0	13	100	0	52	7	7	61	23	1.49
36726707--36726824	25	4.6	25	77	5	119	36	27	13	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36732661--36732891	28	8.3	28	77	8	148	27	25	12	35	1.91
36732702--36733057	28	12.6	28	78	5	333	26	26	12	34	1.92
36733058--36733121	28	2.3	28	91	0	101	18	29	14	37	1.90
36738349--36738377	10	2.9	10	100	0	58	51	6	0	41	1.28
36750600--36750641	20	2.0	21	90	4	68	50	0	19	30	1.48
36751129--36751237	32	3.3	32	80	8	121	32	11	25	31	1.90
36751142--36751239	33	3.0	33	78	12	112	32	11	25	30	1.91
36754560--36754816	40	6.5	40	86	2	315	22	22	28	26	1.99
36759977--36760101	32	3.9	32	81	6	162	29	10	25	34	1.89
36759944--36760147	65	3.1	64	87	6	207	33	12	23	31	1.91
36760022--36760133	33	3.4	33	79	7	147	33	9	23	33	1.87
36762916--36762956	21	2.0	21	85	0	55	36	21	21	19	1.95
36763793--36763896	38	2.8	37	75	15	97	37	27	18	16	1.92
36763880--36763989	39	2.8	39	90	0	166	30	26	21	20	1.98
36763873--36764012	39	3.6	39	83	2	131	30	26	23	19	1.98
36766315--36766354	20	2.0	21	85	5	55	42	0	20	37	1.52
36769780--36769934	57	2.7	58	76	7	156	30	22	16	30	1.96
36779947--36779983	19	2.0	19	89	5	58	54	10	2	32	1.49
36780834--36780885	19	2.7	18	82	8	59	36	1	1	59	1.19
36781827--36781851	4	6.2	4	100	0	50	24	76	0	0	0.80
36786252--36786429	27	6.6	27	83	3	169	29	28	15	26	1.96
36786273--36786428	82	1.9	81	85	3	215	28	28	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36786914--36786939	12	2.2	12	100	0	52	42	0	7	50	1.31
36798512--36798679	39	4.3	40	83	4	198	23	22	29	24	1.99
36798534--36798714	78	2.3	79	80	3	206	25	21	29	23	1.99
36806414--36806583	40	4.3	40	84	1	198	23	21	30	24	1.99
36806436--36806618	79	2.3	80	80	1	199	25	21	30	23	1.99
36808151--36808177	13	2.1	13	100	0	54	22	0	0	77	0.76
36816844--36816991	41	3.6	41	77	12	151	22	21	28	27	1.99
36816822--36816991	41	4.2	40	74	18	143	22	22	27	28	1.99
36824389--36824417	14	2.1	14	100	0	58	44	6	13	34	1.71
36824920--36824946	10	2.7	10	100	0	54	29	0	11	59	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333