Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  328  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106292519--106292581
3
20.7
3
78
12
58
69
0
30
0
0.88
106292515--106292580
14
4.4
15
76
14
57
71
0
28
0
0.87
106292513--106292579
22
3.0
22
86
4
82
70
0
29
0
0.88
106292641--106292690
22
2.3
22
89
6
75
66
0
34
0
0.92
106292536--106292865
111
3.0
111
92
7
586
57
2
36
2
1.26
106292729--106292794
11
6.7
10
70
19
50
72
0
27
0
0.85
106292727--106292793
22
3.1
21
85
8
91
71
0
28
0
0.86
106292521--106292896
103
3.5
105
89
7
573
59
2
35
2
1.22
106293344--106293886
151
3.6
147
78
11
571
56
5
8
29
1.51
106293806--106293839
18
1.9
17
88
5
50
73
2
0
23
0.97
106293807--106293865
15
4.1
15
72
12
52
67
3
3
25
1.21
106293344--106294313
148
6.6
149
72
16
743
56
5
7
29
1.51
106293764--106294011
128
2.0
124
87
5
354
58
5
7
29
1.47
106293934--106293985
10
5.2
10
72
9
52
67
0
1
30
1.02
106293461--106294417
427
2.2
429
93
2
1629
56
5
7
30
1.51
106296094--106296269
30
5.8
30
91
1
280
25
48
3
22
1.66
106296094--106296269
61
2.9
60
94
1
316
25
48
3
22
1.66
106296774--106296971
25
7.8
25
69
10
84
34
6
3
56
1.41
106296831--106296937
56
2.0
52
82
8
126
33
5
2
57
1.36
106297123--106297170
16
3.1
15
90
6
69
31
2
2
64
1.16
106297123--106297174
8
6.5
8
82
8
61
30
1
1
65
1.14
106298700--106298735
12
3.0
12
95
0
63
27
25
5
41
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106306909--106307219
75
4.0
72
74
15
257
27
17
21
34
1.95
106307045--106307075
14
2.3
14
94
5
55
12
12
9
64
1.50
106307060--106307427
73
4.8
73
71
15
274
28
16
20
34
1.95
106307205--106307233
14
2.1
14
100
0
58
13
13
6
65
1.45
106307219--106307460
76
3.2
73
83
5
297
28
16
20
34
1.94
106307465--106307704
76
3.2
74
84
4
295
28
15
20
35
1.93
106307077--106307757
240
2.8
240
93
1
1141
28
16
20
34
1.94
106308469--106308643
30
5.8
30
87
2
262
25
48
4
22
1.68
106308469--106308643
60
2.9
60
94
2
307
25
48
4
22
1.68
106309133--106309264
25
5.5
23
68
16
65
34
4
3
57
1.34
106309198--106309314
25
4.5
27
70
11
82
33
6
4
55
1.46
106309210--106309348
25
5.5
25
72
12
97
33
6
4
56
1.45
106309207--106309299
26
3.4
28
74
14
77
32
5
4
58
1.40
106309502--106309561
24
2.5
24
86
5
77
30
1
3
65
1.19
106309509--106309550
8
5.5
8
94
2
61
30
0
4
64
1.14
106309509--106309557
16
3.1
16
85
11
66
30
0
4
65
1.11
106314027--106314141
29
4.0
27
82
10
113
27
14
29
27
1.95
106326803--106327068
103
2.6
104
90
3
419
19
20
29
29
1.97
106328310--106328337
14
2.0
14
100
0
56
14
21
7
57
1.61
106328343--106328570
76
3.0
74
85
5
307
28
16
21
32
1.95
106328547--106328588
14
2.9
15
85
7
59
14
14
7
64
1.48
106328550--106328599
14
3.6
14
81
7
57
20
12
4
64
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106329347--106329491
30
4.8
30
91
0
236
24
48
3
23
1.66
106329347--106329491
60
2.4
60
95
0
263
24
48
3
23
1.66
106329982--106330189
25
8.5
25
72
12
139
33
6
4
56
1.44
106330070--106330156
27
3.4
25
73
9
77
29
5
5
58
1.45
106330345--106330392
16
3.1
15
90
6
69
31
2
2
64
1.16
106330336--106330397
24
2.5
25
79
10
74
30
3
1
64
1.19
106330345--106330396
8
6.5
8
82
8
61
30
1
1
65
1.14
106331887--106331921
16
2.2
16
100
0
70
48
14
5
31
1.67
106335048--106335120
31
2.4
31
88
2
112
46
9
6
36
1.63
106342831--106342877
21
2.2
22
92
3
78
21
19
38
21
1.94
106347215--106347239
3
8.3
3
100
0
50
0
36
0
64
0.94
106352822--106352857
17
2.0
19
89
10
58
66
0
8
25
1.19
106357882--106357910
5
5.8
5
100
0
58
62
17
0
20
1.33
106358089--106358161
37
2.0
37
86
0
101
56
4
12
27
1.54
106361563--106361594
16
2.0
16
100
0
64
43
25
12
18
1.85
106364562--106364697
47
2.9
48
75
4
141
34
13
23
28
1.92
106373763--106373788
12
2.2
12
100
0
52
46
38
0
15
1.46
106375714--106375783
31
2.3
31
84
0
86
38
2
8
50
1.48
106381856--106381896
21
2.0
21
90
0
64
19
29
21
29
1.98
106387784--106387851
31
2.2
31
84
7
86
39
8
19
32
1.82
106387901--106387963
31
2.1
31
90
3
101
44
12
7
34
1.72
106391198--106391242
2
22.5
2
95
0
81
2
48
0
48
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106393268--106393403
39
3.5
39
89
0
209
14
26
22
36
1.93
106394231--106394287
4
13.8
4
78
7
60
0
66
5
28
1.13
106394243--106394323
8
10.4
8
82
5
67
1
58
3
37
1.24
106394285--106394327
2
21.5
2
95
0
77
2
48
0
48
1.14
106395918--106396457
3
178.3
3
66
12
158
56
3
10
29
1.48
106396147--106396216
20
3.5
20
80
9
79
54
1
12
31
1.47
106397430--106397490
22
2.7
23
73
12
56
9
3
37
49
1.52
106397654--106397778
41
3.0
41
94
0
223
41
10
15
32
1.81
106398195--106398261
22
3.0
22
74
8
64
46
16
19
17
1.85
106398582--106398629
21
2.3
21
92
0
78
41
6
0
52
1.27
106398590--106398632
21
2.0
21
100
0
86
37
4
0
58
1.19
106401829--106401858
10
3.0
10
100
0
60
40
10
10
40
1.72
106411250--106411295
23
2.0
24
95
4
85
69
0
30
0
0.89
106411847--106412378
150
3.6
147
79
9
619
56
6
7
29
1.52
106411848--106412385
156
3.6
146
78
11
550
56
6
7
29
1.52
106414784--106414822
17
2.3
17
91
8
62
46
10
10
33
1.72
106418919--106418957
21
1.9
20
89
5
60
0
30
2
66
1.05
106418917--106418972
25
2.2
26
87
3
78
1
30
1
66
1.12
106421184--106421227
17
2.6
18
89
10
74
65
11
4
18
1.40
106421482--106421515
16
2.1
16
88
0
50
50
14
17
17
1.79
106424315--106424355
21
2.0
21
90
0
64
29
21
29
19
1.98
106426261--106426294
16
2.1
16
88
0
50
50
14
17
17
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106427231--106427359
60
2.1
61
97
1
242
48
13
4
33
1.62
106432755--106432793
20
1.9
20
84
5
51
28
20
12
38
1.89
106433700--106433749
20
2.5
20
81
9
57
46
0
0
54
1.00
106435186--106435294
56
2.0
55
83
1
137
20
10
16
53
1.71
106438387--106438558
54
3.2
53
86
5
231
34
12
26
25
1.92
106438392--106438554
53
3.0
54
86
4
206
34
13
25
25
1.93
106445996--106446186
53
3.6
51
81
9
211
32
13
26
27
1.94
106448122--106448146
13
1.9
13
100
0
50
88
0
4
8
0.64
106450307--106450353
18
2.8
16
84
12
58
48
25
0
25
1.51
106458503--106458543
21
2.0
21
90
0
64
29
21
29
19
1.98
106470606--106470660
4
14.0
4
85
11
78
72
0
27
0
0.85
106470604--106470666
20
3.2
20
85
10
87
71
0
28
0
0.86
106472195--106472219
12
2.1
12
100
0
50
16
24
20
40
1.91
106472199--106472314
47
2.5
46
86
6
146
17
19
23
39
1.92
106472443--106472633
18
10.6
18
76
10
158
34
12
15
37
1.86
106472671--106472726
18
3.2
18
76
2
51
35
10
16
37
1.83
106475333--106475470
35
3.9
36
77
16
128
30
10
26
33
1.89
106475353--106475470
35
3.4
33
90
2
137
28
10
26
34
1.89
106475348--106475550
75
2.8
75
80
4
220
32
11
23
33
1.91
106475345--106475540
110
1.8
105
82
5
248
31
11
23
33
1.90
106478961--106478988
14
2.0
14
100
0
56
42
14
14
28
1.84
106482877--106483002
35
3.6
35
91
0
144
29
8
25
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106482880--106483039
70
2.2
70
82
5
194
31
9
24
34
1.87
106482877--106483077
110
1.9
105
82
5
249
31
10
23
34
1.89
106484909--106484977
29
2.4
28
77
15
77
60
4
4
30
1.35
106484987--106485268
138
2.0
138
100
0
564
33
15
17
32
1.92
106488431--106488466
14
2.6
14
90
0
54
72
5
0
22
1.05
106489747--106489812
31
2.1
31
86
10
91
31
13
15
39
1.86
106500413--106500452
20
2.1
19
86
13
55
60
2
0
37
1.11
106510870--106511758
381
2.3
381
96
0
1616
33
16
25
24
1.96
106514055--106514616
222
2.5
221
89
0
827
35
12
25
25
1.92
106527430--106527515
31
2.7
31
78
7
75
27
12
10
48
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333