genome.fa.s3.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  148  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48513708--48513760	21	2.5	21	87	6	81	24	26	32	16	1.97
48523791--48523955	35	4.7	35	76	6	102	18	12	26	42	1.86
48523792--48523942	70	2.2	70	77	9	155	17	13	27	42	1.86
48526351--48526529	27	6.7	27	89	0	234	39	20	9	31	1.84
48526351--48526637	27	10.7	27	81	4	231	37	21	9	31	1.86
48526628--48526866	27	8.9	27	82	0	246	38	18	19	23	1.93
48526624--48526837	54	4.0	54	86	0	275	39	18	18	23	1.92
48526624--48526866	81	3.0	81	85	1	301	37	18	18	24	1.94
48527115--48527165	27	1.9	26	84	4	66	17	27	19	35	1.94
48527096--48527249	71	2.2	67	85	4	200	19	29	22	29	1.98
48533467--48533550	35	2.4	35	86	4	107	19	10	25	45	1.82
48533495--48533561	35	1.9	35	84	0	89	22	8	26	41	1.83
48534388--48534417	12	2.5	12	100	0	60	26	33	23	16	1.96
48543856--48543928	36	2.0	36	94	0	128	38	8	16	36	1.79
48575498--48575542	22	2.0	22	82	0	54	28	11	8	51	1.68
48576001--48576146	43	3.4	43	77	12	158	31	24	16	27	1.96
48575990--48576147	84	1.9	84	89	0	244	31	24	16	27	1.96
48576814--48576843	14	2.1	15	93	6	53	50	20	0	30	1.49
48584053--48584545	47	10.4	47	92	1	779	33	8	29	29	1.86
48584057--48584545	143	3.4	143	95	0	856	33	8	29	29	1.86
48584053--48584545	190	2.6	188	92	1	797	33	8	29	29	1.86
48584664--48584742	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48586977--48587031	27	2.0	27	92	0	92	43	1	20	34	1.62
48590061--48590244	40	4.6	39	80	9	194	23	22	27	25	2.00
48590113--48590267	79	2.0	79	82	7	190	25	21	27	26	1.99
48598153--48598336	40	4.6	41	82	9	213	24	22	27	25	2.00
48598153--48598334	79	2.3	81	82	8	214	24	23	27	24	2.00
48603464--48603506	19	2.2	20	95	4	79	18	27	32	20	1.96
48605303--48605396	6	15.3	6	72	16	77	48	14	18	18	1.81
48605324--48605396	31	2.4	31	92	0	119	47	15	19	17	1.82
48605536--48605599	33	2.0	32	84	3	83	35	20	23	20	1.96
48605900--48606203	27	11.2	27	86	2	367	42	8	19	29	1.81
48605899--48606203	54	5.6	54	88	1	423	42	8	19	29	1.81
48606197--48606349	27	5.7	26	80	6	139	28	7	23	40	1.82
48606181--48606357	54	3.3	53	78	7	187	28	7	22	40	1.82
48608012--48608043	16	1.9	17	93	6	57	43	15	9	31	1.78
48608750--48608776	9	3.0	9	100	0	54	33	11	0	55	1.35
48611586--48611855	48	5.7	46	76	11	233	28	17	29	25	1.97
48611586--48611855	144	1.9	144	82	1	344	28	17	29	25	1.97
48611576--48611855	96	2.9	95	86	5	379	28	16	29	25	1.97
48613159--48613188	15	2.0	15	93	0	51	26	0	16	56	1.40
48613808--48613932	56	2.2	56	91	0	205	26	13	25	34	1.93
48613808--48613965	56	2.8	56	86	5	187	25	13	25	34	1.93
48621358--48621404	23	2.0	23	83	8	58	44	21	19	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48626820--48627082	40	6.6	39	86	4	296	25	27	21	25	1.99
48627014--48627091	40	1.9	41	82	10	97	26	28	20	24	1.99
48629450--48629531	38	2.2	38	86	0	110	23	24	23	29	1.99
48629463--48629585	38	3.2	38	85	2	156	19	20	26	33	1.96
48629752--48629784	15	2.2	15	100	0	66	45	12	18	24	1.83
48638844--48638898	29	2.0	28	89	7	85	36	21	12	29	1.91
48646165--48646224	29	2.1	29	96	0	111	35	23	15	26	1.94
48649017--48649081	27	2.4	27	86	0	94	26	23	9	41	1.84
48649059--48649117	26	2.3	26	87	0	82	30	20	10	38	1.86
48649111--48649237	54	2.4	54	80	7	134	40	21	9	28	1.84
48649159--48649319	54	2.9	54	79	4	153	40	18	8	31	1.81
48649139--48649237	27	3.7	27	84	4	137	41	22	7	29	1.80
48649228--48649325	27	3.6	27	78	13	101	38	17	10	33	1.83
48649379--48649470	27	3.4	27	83	3	105	36	19	22	20	1.95
48650272--48650420	52	2.9	52	96	2	275	27	24	22	26	2.00
48650272--48650420	26	5.8	26	90	0	230	27	24	22	26	2.00
48650565--48650656	42	2.2	42	86	0	121	30	14	21	33	1.93
48650680--48650757	31	2.5	31	93	0	120	29	17	25	26	1.98
48654208--48654384	48	3.7	47	78	10	189	26	20	29	23	1.99
48654205--48654379	96	1.8	96	87	2	262	26	20	29	23	1.99
48657688--48657990	51	6.0	51	83	3	339	25	18	26	29	1.98
48657744--48658016	150	1.8	151	84	4	372	26	17	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48661358--48661726	56	6.6	56	84	3	483	28	15	23	33	1.95
48661358--48661728	168	2.2	168	91	0	589	28	15	22	33	1.95
48664853--48664979	59	2.2	59	95	1	238	29	3	22	44	1.69
48664856--48664948	29	3.2	29	67	19	84	31	2	23	43	1.66
48667376--48667415	21	1.9	21	89	0	62	37	20	2	40	1.66
48670094--48670130	18	2.1	19	90	10	60	29	8	27	35	1.85
48671761--48671811	25	2.0	25	96	0	93	29	7	25	37	1.84
48676399--48676435	18	2.1	19	90	10	60	29	8	27	35	1.85
48681992--48682099	41	2.7	40	84	2	144	24	17	25	32	1.97
48683149--48683196	12	4.1	12	81	2	53	27	39	25	8	1.84
48683145--48683195	24	2.1	25	85	3	68	27	41	23	7	1.82
48685617--48685718	6	16.8	6	77	17	104	49	13	17	19	1.80
48685596--48685718	30	4.1	30	85	5	149	47	13	18	19	1.82
48685836--48685901	27	2.5	26	85	7	87	37	22	22	16	1.93
48685836--48685909	27	2.8	27	78	13	82	36	21	24	17	1.95
48686074--48686132	22	2.7	22	81	0	64	32	22	25	20	1.98
48686220--48686302	27	3.1	26	87	5	112	38	21	20	19	1.93
48686501--48686696	27	7.3	27	82	3	189	26	18	19	36	1.94
48686501--48686695	54	3.6	54	84	4	250	26	18	19	35	1.95
48686503--48686695	80	2.4	81	81	6	214	26	18	18	36	1.94
48686700--48687163	27	17.2	27	83	7	532	40	9	21	27	1.85
48692522--48692670	40	3.7	40	83	1	172	25	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48692522--48692673	81	1.9	81	83	0	196	25	17	25	32	1.97
48693245--48693330	42	2.0	42	95	0	154	31	6	24	37	1.82
48699767--48699944	27	6.6	27	84	3	205	29	28	15	26	1.96
48699788--48699943	82	1.9	81	88	3	233	29	28	15	26	1.96
48707744--48707920	27	6.6	27	84	5	205	29	28	14	27	1.95
48707765--48707919	81	1.9	81	88	5	233	29	28	14	27	1.95
48728845--48728904	29	2.1	29	93	0	102	41	18	15	25	1.89
48730510--48730611	23	4.3	23	72	8	80	21	22	18	37	1.94
48730545--48730624	23	3.4	23	77	8	81	25	21	16	37	1.93
48730617--48730666	26	2.0	25	84	4	64	32	24	20	24	1.98
48734828--48734862	15	2.3	15	100	0	70	20	31	11	37	1.88
48736815--48736855	22	1.9	22	90	5	66	17	26	43	12	1.84
48737878--48738087	46	4.5	46	78	9	180	24	28	19	28	1.98
48744720--48744779	30	2.0	30	93	0	102	58	15	1	25	1.46
48746119--48746245	47	2.8	44	82	12	141	23	32	18	25	1.97
48747446--48747903	229	2.0	230	95	0	828	40	17	15	27	1.89
48758124--48758334	40	5.3	40	83	3	257	25	27	23	24	2.00
48768795--48768888	28	3.5	26	75	12	82	34	23	24	18	1.96
48768990--48769064	26	2.9	26	91	0	114	22	14	28	34	1.94
48776722--48776819	28	3.5	28	84	0	88	35	21	24	18	1.95
48776926--48776984	26	2.3	25	80	8	64	27	8	25	38	1.84
48785904--48786206	40	7.6	40	88	3	362	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48785902--48786206	120	2.5	119	87	2	414	27	27	20	24	1.99
48819168--48819232	33	2.0	33	84	0	85	30	27	23	18	1.97
48821132--48821296	80	2.1	80	85	4	217	24	21	25	27	1.99
48821132--48821278	40	3.7	40	92	1	224	25	22	25	26	2.00
48822690--48822767	26	3.0	26	70	7	68	41	19	19	20	1.91
48822734--48822803	27	2.6	27	77	8	79	37	20	21	21	1.95
48822955--48823095	27	5.3	26	83	7	158	23	24	19	33	1.97
48822955--48823095	54	2.6	54	84	3	178	23	24	19	33	1.97
48823220--48823259	19	2.0	20	85	9	55	40	17	25	17	1.91
48828616--48828742	45	2.9	45	84	10	140	24	28	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333