genome.fa.s3.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  145  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47440298--47440359	33	1.9	33	83	6	83	46	6	8	38	1.59
47441810--47441863	23	2.3	23	90	0	90	18	0	40	40	1.51
47442731--47442863	43	3.1	43	78	2	126	33	25	14	27	1.94
47443965--47444072	55	2.0	55	100	0	216	37	10	18	34	1.85
47461497--47461674	46	3.9	46	91	2	261	41	13	23	22	1.89
47466537--47466562	9	2.9	9	100	0	52	80	19	0	0	0.71
47466640--47466701	33	1.9	33	83	6	83	46	6	8	38	1.59
47468135--47468189	22	2.5	21	82	8	65	18	0	38	43	1.50
47468132--47468202	22	3.2	20	75	15	61	18	2	39	39	1.65
47469049--47469181	43	3.1	43	78	2	126	33	25	14	27	1.94
47470282--47470389	55	2.0	55	100	0	216	37	10	18	34	1.85
47483553--47483593	21	2.0	21	100	0	82	46	24	14	14	1.82
47491910--47491954	20	2.2	20	100	0	90	26	4	35	33	1.77
47502025--47502053	13	2.3	13	94	5	51	34	0	6	58	1.25
47502149--47502186	18	2.1	18	100	0	76	34	15	5	44	1.69
47503235--47503272	14	2.7	14	91	0	58	39	5	15	39	1.70
47503264--47503300	19	1.9	19	94	0	65	29	5	10	54	1.57
47503369--47503441	36	2.0	36	87	10	105	39	2	1	56	1.22
47503576--47503652	23	3.2	25	66	14	63	45	14	9	31	1.76
47509073--47509312	38	5.8	38	80	12	237	30	25	14	30	1.95
47509144--47509312	48	3.8	48	84	8	207	30	24	14	30	1.95
47513465--47513514	24	2.0	25	92	7	84	56	8	16	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47516841--47516872	16	1.9	17	93	6	57	37	3	0	59	1.13
47520494--47520619	48	2.7	49	84	10	149	23	30	19	26	1.98
47520542--47520760	46	4.7	47	78	12	213	23	30	18	26	1.98
47520391--47520757	46	7.8	47	74	14	201	24	29	18	27	1.98
47520391--47520760	94	3.9	97	74	13	324	24	29	18	27	1.98
47524760--47524835	21	3.5	21	66	16	55	22	14	26	36	1.92
47524772--47524841	21	3.2	21	68	18	61	21	14	25	38	1.91
47528772--47528868	44	2.2	44	94	0	167	29	21	18	29	1.97
47535228--47535436	55	3.9	53	78	6	222	35	16	24	22	1.95
47535235--47535435	108	1.8	110	88	2	307	35	17	24	22	1.95
47535551--47535595	23	1.9	24	90	4	74	42	11	24	22	1.86
47535674--47535704	16	1.9	16	93	0	53	41	0	22	35	1.54
47537086--47537130	20	2.2	20	88	0	63	35	13	2	48	1.54
47542492--47542698	53	3.8	54	78	3	202	20	24	17	38	1.93
47546211--47546377	46	3.6	46	78	13	180	27	27	20	23	1.99
47546211--47546382	93	1.8	93	92	0	290	27	27	20	23	1.99
47550873--47551122	40	6.3	39	87	5	277	25	21	27	25	1.99
47550820--47551122	80	3.8	80	83	3	335	25	21	27	25	1.99
47550820--47551122	120	2.5	119	83	3	349	25	21	27	25	1.99
47550900--47551157	80	3.2	80	85	2	252	25	21	27	25	1.99
47558476--47558730	40	6.4	38	85	6	242	25	20	27	25	1.99
47558429--47558730	119	2.5	118	83	3	354	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47558429--47558730	79	3.8	79	84	4	340	25	21	27	25	1.99
47562025--47562130	28	3.9	27	77	16	103	47	16	16	19	1.83
47562536--47562568	17	1.9	17	93	0	57	42	12	0	45	1.41
47568461--47568536	34	2.2	34	88	0	107	31	23	22	22	1.98
47578479--47578536	28	2.2	27	88	11	86	50	18	15	15	1.79
47583639--47583705	20	3.3	20	95	4	118	34	19	10	35	1.86
47583639--47583694	11	5.5	11	75	16	66	33	19	10	35	1.87
47583639--47583711	9	7.4	10	73	17	64	35	19	9	35	1.84
47586588--47586700	53	2.3	50	85	10	144	30	27	16	25	1.97
47586614--47586768	52	3.0	53	79	8	158	30	27	15	26	1.96
47589632--47589804	46	3.8	45	75	14	156	22	17	27	31	1.97
47589629--47589798	93	1.8	93	88	2	261	21	18	28	31	1.97
47608489--47608520	5	6.6	5	92	7	57	81	0	0	18	0.70
47608490--47608520	9	3.3	9	95	4	53	80	0	0	19	0.71
47615136--47615243	26	4.2	26	87	0	162	36	24	8	31	1.85
47619375--47619429	24	2.2	25	87	9	85	45	41	0	12	1.42
47619924--47619962	7	5.6	7	84	0	51	23	48	5	23	1.70
47619924--47619967	14	3.1	14	83	0	52	22	47	4	25	1.70
47621569--47621763	55	3.6	53	77	2	192	20	24	16	38	1.93
47625087--47625136	26	1.9	26	91	0	82	38	10	10	42	1.72
47632009--47632045	19	1.9	19	89	10	58	72	0	2	24	0.97
47634988--47635028	16	2.6	16	96	3	75	51	4	4	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47635262--47635340	38	2.1	38	97	0	149	34	11	17	36	1.86
47641246--47642722	743	2.0	743	100	0	2954	37	20	11	30	1.88
47644033--47644091	29	2.0	29	96	0	109	59	6	5	28	1.45
47645106--47645235	69	1.9	69	91	3	217	43	10	4	42	1.59
47650734--47650801	29	2.3	29	87	0	91	13	30	0	55	1.38
47652049--47652090	20	2.1	20	100	0	84	40	9	14	35	1.78
47659315--47659366	8	6.8	8	76	24	58	57	0	1	40	1.10
47659308--47659366	14	4.5	14	73	16	63	55	0	1	42	1.09
47659315--47659360	24	1.9	24	95	0	83	58	0	2	39	1.10
47661720--47661792	30	2.4	29	84	6	92	32	39	19	8	1.81
47661873--47661907	18	1.9	18	94	0	61	25	31	8	34	1.86
47665481--47665998	126	4.1	126	88	3	747	29	16	16	38	1.90
47665481--47665998	251	2.1	252	89	1	799	29	16	16	38	1.90
47668659--47668704	14	3.2	14	77	22	51	65	0	2	32	1.05
47669439--47669498	28	2.1	28	81	6	68	50	1	5	43	1.34
47669457--47669505	15	3.4	15	70	18	50	38	2	4	55	1.31
47671476--47671506	4	8.0	4	92	7	55	51	0	0	48	1.00
47672445--47672601	54	2.7	58	80	14	171	53	3	1	42	1.25
47673224--47673260	19	1.9	19	94	0	65	64	5	0	29	1.15
47673495--47673624	63	2.1	63	100	0	260	43	13	17	25	1.86
47674149--47674232	25	3.2	25	73	12	78	51	16	7	25	1.70
47682368--47682439	24	3.0	24	78	13	67	29	20	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47682631--47682713	31	2.7	31	85	3	116	28	16	25	28	1.97
47706272--47706377	24	4.4	24	86	1	140	18	36	5	38	1.75
47707595--47707652	30	1.9	30	92	0	98	29	12	27	31	1.92
47709991--47710015	13	1.9	13	100	0	50	8	0	16	76	1.02
47714527--47714613	27	3.2	27	85	0	111	34	14	19	31	1.92
47715050--47715112	27	2.4	26	75	15	74	20	20	17	41	1.91
47715229--47715298	25	2.8	25	84	6	97	24	18	12	44	1.85
47715229--47715317	6	14.5	6	73	9	63	22	17	12	47	1.81
47717306--47717404	27	3.7	25	70	15	74	36	23	9	31	1.86
47717395--47717529	27	5.0	27	85	0	171	34	20	20	24	1.96
47718089--47718213	6	20.3	6	70	16	78	19	19	12	48	1.80
47718095--47718156	25	2.5	25	91	0	97	19	20	14	45	1.85
47718111--47718204	37	2.5	37	94	0	161	19	20	12	47	1.81
47723762--47723981	46	4.7	47	76	8	175	27	20	28	23	1.99
47723856--47724073	46	4.6	47	75	12	139	27	16	30	25	1.97
47723949--47724078	48	2.7	48	79	2	134	29	14	31	24	1.95
47726569--47726609	21	2.0	21	95	0	73	39	17	24	19	1.92
47733663--47733741	31	2.5	31	97	0	149	26	25	18	29	1.98
47733769--47733856	42	2.1	42	89	0	131	37	19	12	30	1.89
47734001--47734099	26	3.8	26	86	4	146	25	22	23	29	1.99
47734001--47734110	27	4.2	27	87	2	145	27	21	21	29	1.99
47734001--47734110	53	2.1	52	89	5	177	27	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47736383--47736550	40	4.2	40	82	8	148	27	27	20	24	1.99
47736418--47736603	80	2.3	80	83	9	229	27	27	20	23	1.99
47736420--47736603	40	4.6	40	83	7	205	27	27	21	23	1.99
47738623--47738883	39	6.6	39	87	7	302	24	27	21	25	1.99
47741311--47741387	27	2.9	27	77	11	77	22	20	19	37	1.94
47741432--47741561	27	4.7	27	77	11	102	30	5	19	44	1.73
47741433--47741606	54	3.2	54	84	3	170	31	6	20	42	1.77
47741491--47741614	27	4.6	27	86	6	162	27	6	23	42	1.78
47741645--47741842	27	7.3	27	85	2	245	37	8	25	28	1.84
47741645--47741842	81	2.4	81	89	3	292	37	8	25	28	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333