genome.fa.s3.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  109  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35060123--35060237	54	2.1	54	87	1	160	24	22	16	36	1.94
35066956--35067007	27	2.0	26	84	3	68	34	21	26	17	1.95
35067605--35067658	27	2.0	27	85	3	74	37	20	20	22	1.95
35067675--35067777	54	1.9	54	89	0	161	22	20	22	34	1.96
35067659--35067777	27	4.4	27	83	2	141	22	21	21	35	1.96
35088412--35088490	15	5.3	15	74	4	70	54	18	15	11	1.70
35094567--35094618	24	2.2	24	82	6	61	51	25	3	19	1.63
35099979--35100233	55	4.8	54	77	9	231	21	25	16	36	1.94
35104211--35104498	93	3.1	93	91	1	454	45	4	13	37	1.62
35104674--35104718	21	2.1	21	100	0	90	26	22	13	37	1.91
35108955--35109036	28	3.0	27	82	3	110	30	18	23	28	1.97
35109046--35109332	107	2.7	108	81	7	314	42	18	8	30	1.80
35109029--35109363	27	12.4	27	79	4	255	40	19	9	31	1.83
35109600--35109710	41	2.7	41	88	0	168	22	19	30	27	1.98
35109605--35109725	41	3.0	41	86	0	161	22	20	29	27	1.98
35111673--35111805	48	2.7	49	89	1	196	21	14	27	37	1.92
35118986--35119111	48	2.6	48	85	0	171	21	15	26	36	1.93
35124350--35124406	29	1.9	30	85	3	80	40	3	24	31	1.72
35124619--35124649	13	2.4	13	94	0	53	32	0	12	54	1.38
35124744--35124936	50	3.8	50	88	0	278	26	22	30	20	1.98
35127919--35127945	7	3.9	7	100	0	54	29	11	0	59	1.32
35132928--35132984	22	2.6	22	94	0	96	14	28	29	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35138162--35138261	23	4.2	23	76	6	76	33	18	26	23	1.97
35143205--35143359	38	4.0	38	87	1	193	21	21	24	31	1.98
35143185--35143327	76	1.9	77	86	4	209	23	23	23	29	1.99
35143169--35143347	38	4.6	39	83	4	175	24	23	24	27	2.00
35154857--35155035	38	4.6	39	83	8	188	24	22	24	28	2.00
35156138--35156237	29	3.5	29	76	11	98	32	13	25	30	1.93
35156661--35156687	8	3.4	8	100	0	54	40	11	48	0	1.39
35160016--35160088	29	2.6	28	86	2	92	27	15	30	27	1.96
35171021--35171153	50	2.8	48	76	10	139	24	15	24	36	1.94
35181487--35181711	40	5.6	40	88	6	321	24	28	23	23	1.99
35181487--35181711	83	2.8	82	88	6	336	24	28	23	23	1.99
35189543--35189591	21	2.2	23	85	7	66	42	26	0	30	1.55
35190160--35190241	24	3.2	24	64	29	60	43	17	2	36	1.62
35190149--35190257	54	2.0	54	100	0	218	42	18	1	37	1.61
35194901--35194925	13	1.9	13	100	0	50	32	16	20	32	1.94
35201295--35201402	55	2.0	55	87	3	155	22	34	25	18	1.96
35204446--35204614	50	3.4	50	89	1	261	27	26	18	27	1.98
35204424--35204614	100	1.9	98	89	2	292	28	25	18	27	1.98
35206694--35206739	20	2.2	20	80	3	56	78	2	10	8	1.05
35208830--35209127	46	6.5	47	71	16	182	29	18	27	24	1.98
35209638--35209672	15	2.3	15	100	0	70	74	17	0	8	1.06
35220402--35220543	50	2.8	50	83	0	185	29	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35222583--35222916	164	2.0	164	98	0	650	24	12	28	35	1.91
35224552--35224623	30	2.4	30	78	0	81	36	12	20	30	1.90
35226975--35227177	40	5.1	40	91	1	302	22	24	28	25	1.99
35234004--35234038	13	2.7	13	83	16	54	40	2	11	45	1.55
35234092--35234254	40	4.1	40	91	3	231	21	26	28	23	1.99
35237550--35237736	40	4.7	40	95	2	342	25	23	26	24	2.00
35237550--35237759	40	5.3	39	91	5	309	25	23	26	24	2.00
35238288--35238338	23	2.2	24	83	16	63	33	1	11	52	1.49
35253283--35253500	40	5.5	40	89	2	298	22	23	27	25	2.00
35261333--35261550	40	5.5	40	87	2	280	23	23	27	25	2.00
35268699--35268730	16	2.0	16	93	0	55	34	0	34	31	1.58
35272889--35273053	48	3.5	48	77	4	181	23	25	19	31	1.98
35280706--35280751	5	10.0	5	77	17	55	58	0	2	39	1.10
35280706--35280751	18	2.6	18	92	0	83	58	0	2	39	1.10
35280707--35280748	13	3.2	13	83	10	59	59	0	2	38	1.10
35292115--35292176	26	2.3	26	79	15	65	61	3	3	32	1.28
35295094--35295119	10	2.6	10	100	0	52	0	11	0	88	0.52
35295553--35295622	29	2.5	29	80	11	74	28	2	1	67	1.14
35295589--35295656	28	2.4	29	78	14	70	33	2	1	61	1.20
35295623--35295719	33	3.1	32	77	14	78	36	4	1	58	1.24
35295624--35295719	40	2.4	39	76	15	99	36	4	1	58	1.24
35295679--35295721	12	3.7	12	84	3	61	34	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35299980--35300151	93	1.8	93	93	0	299	27	30	20	20	1.98
35299972--35300147	46	3.8	46	79	10	205	28	29	20	21	1.98
35303623--35303713	46	2.0	46	88	0	137	26	30	8	34	1.87
35303687--35304065	47	8.1	47	92	0	571	26	29	10	33	1.90
35303730--35303851	22	5.3	22	66	26	65	26	28	11	33	1.91
35303871--35303946	24	3.3	22	65	22	57	25	31	11	31	1.91
35325727--35325810	26	3.4	25	85	6	91	27	21	23	27	1.99
35325743--35325810	26	2.7	25	90	4	102	26	22	27	23	1.99
35325858--35325905	20	2.4	20	96	0	87	33	16	12	37	1.86
35332430--35332655	48	4.7	47	81	8	208	23	28	18	29	1.98
35332479--35332663	96	1.9	96	91	2	300	25	28	18	27	1.98
35332478--35332664	48	3.9	47	83	4	223	25	28	18	27	1.98
35335295--35335482	40	4.6	40	89	3	286	27	27	22	22	1.99
35335262--35335479	83	2.7	83	87	2	291	27	27	21	24	1.99
35342952--35343129	40	4.5	40	90	0	250	24	26	23	25	2.00
35348155--35348182	14	2.0	14	100	0	56	42	21	14	21	1.88
35351394--35351424	12	2.6	12	94	0	53	48	48	3	0	1.17
35355347--35355475	46	2.8	46	92	0	213	28	27	22	20	1.99
35360819--35360990	93	1.8	93	93	0	299	27	29	22	21	1.99
35360811--35360986	46	3.8	46	80	10	214	28	28	21	21	1.99
35360862--35361005	46	3.1	46	71	18	136	29	27	20	22	1.98
35363098--35363129	12	2.7	12	90	0	55	9	25	37	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35365703--35365865	43	3.8	43	76	8	154	28	23	17	30	1.97
35369223--35369394	46	3.7	44	81	11	177	28	19	29	23	1.98
35369228--35369436	46	4.5	46	79	14	157	28	18	29	23	1.98
35372200--35372354	23	6.8	23	70	12	113	27	21	16	34	1.95
35372188--35372311	46	2.7	46	82	2	142	27	23	16	33	1.95
35372200--35372354	68	2.3	68	82	7	181	27	21	16	34	1.95
35376690--35376783	43	2.2	42	79	7	100	22	19	26	31	1.97
35378200--35378305	31	3.4	31	94	0	185	23	25	16	34	1.95
35378520--35378590	26	2.8	25	89	4	115	26	22	25	25	2.00
35380856--35380880	3	8.3	3	100	0	50	64	0	0	36	0.94
35381964--35382043	42	1.9	42	92	0	133	30	13	22	33	1.93
35387370--35387427	29	2.0	30	93	3	100	29	18	27	24	1.98
35387752--35387971	46	4.7	46	74	13	175	26	20	28	24	1.99
35387751--35388022	94	2.9	94	80	10	265	27	20	28	24	1.99
35387849--35388018	47	3.6	46	85	7	184	27	18	29	24	1.98
35387746--35388020	140	2.0	141	80	10	314	27	19	28	24	1.99
35393233--35393449	46	4.6	46	79	6	213	27	19	29	23	1.98
35393226--35393497	94	2.9	94	81	8	279	26	19	30	23	1.98
35393233--35393497	47	5.7	46	77	12	215	27	20	29	23	1.98
35393233--35393497	140	1.9	141	82	6	342	27	20	29	23	1.98
35397827--35398102	39	7.1	39	92	0	462	21	25	29	23	1.99
35402410--35402536	47	2.8	43	79	12	139	26	21	30	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35402410--35402579	91	1.8	93	85	6	238	27	20	29	22	1.98
35402728--35402793	31	2.1	31	97	0	123	27	6	27	39	1.80
35406954--35406986	17	1.9	17	100	0	66	24	0	6	69	1.10
35407033--35407077	19	2.4	19	85	7	56	33	0	8	57	1.30
35413967--35414270	47	6.4	47	90	3	416	26	30	9	33	1.88
35421399--35421519	43	2.8	44	83	3	149	33	30	15	20	1.94
35421414--35421519	42	2.5	42	83	4	124	33	30	16	19	1.95
35428697--35428722	10	2.6	10	100	0	52	0	38	0	61	0.96
35432288--35432360	28	2.6	29	86	2	103	30	32	13	23	1.93
35432288--35432378	29	3.2	28	84	6	105	28	31	15	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333