genome.fa.s3.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  96  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30418270--30418532	54	4.9	54	80	5	271	23	23	16	36	1.94
30418281--30418532	108	2.3	108	82	5	305	22	23	16	37	1.94
30418510--30418631	47	2.6	46	84	5	172	26	24	13	35	1.93
30418770--30418854	44	1.9	44	83	4	109	24	24	12	37	1.91
30424526--30424776	108	2.3	107	82	4	308	22	23	17	36	1.94
30424515--30424776	54	4.9	54	81	4	278	22	24	16	36	1.94
30424754--30424875	47	2.6	46	89	5	190	25	26	13	34	1.93
30433070--30433104	11	3.2	11	87	0	52	57	2	5	34	1.37
30433391--30433418	8	3.5	8	100	0	56	25	0	21	53	1.46
30439657--30439824	40	4.2	40	83	4	106	25	27	23	23	2.00
30439680--30439824	40	3.6	40	85	4	193	23	26	24	25	2.00
30447453--30447624	79	2.2	79	84	3	220	25	21	27	25	1.99
30447453--30447622	40	4.3	39	87	5	207	25	21	27	25	1.99
30447480--30447657	79	2.2	80	80	3	191	25	21	28	24	1.99
30455549--30455604	27	2.1	27	90	6	87	35	28	25	10	1.89
30457018--30457070	24	2.2	24	89	0	79	22	45	1	30	1.63
30463289--30463398	27	4.1	26	86	5	139	37	21	23	17	1.94
30464637--30464737	24	4.2	24	96	0	175	22	41	2	32	1.69
30468073--30468116	15	2.9	15	89	3	70	81	2	6	9	0.94
30476312--30476574	47	5.6	47	90	1	391	32	8	30	28	1.87
30479401--30479450	22	2.3	22	83	13	59	70	2	26	2	1.09
30484157--30484272	40	2.9	40	80	5	144	23	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30487266--30487494	39	5.8	40	85	7	258	25	22	27	24	2.00
30487266--30487494	79	2.9	79	84	5	293	25	22	27	24	2.00
30487266--30487494	118	1.9	119	83	6	295	25	22	27	24	2.00
30495293--30495516	40	5.7	40	86	7	273	24	22	27	25	2.00
30495293--30495516	79	2.8	80	85	8	287	24	22	27	25	2.00
30495293--30495549	79	3.3	79	82	9	224	25	22	27	24	2.00
30513276--30521434	633	12.9	633	91	1	12988	32	16	21	29	1.95
30523621--30523694	26	2.8	25	82	8	76	45	10	14	28	1.79
30523621--30523680	26	2.3	26	88	0	84	46	13	11	28	1.78
30535699--30535852	27	5.7	27	84	3	193	40	20	9	29	1.83
30535699--30535852	54	2.9	55	85	3	215	40	20	9	29	1.83
30535693--30535865	81	2.1	81	81	5	215	39	18	11	30	1.86
30538742--30538784	11	3.7	11	79	11	50	60	4	0	34	1.17
30540097--30540135	15	2.6	15	84	12	53	30	15	25	28	1.96
30540660--30540836	83	2.1	83	94	1	311	35	11	20	31	1.89
30549630--30549774	40	3.6	40	87	1	184	24	21	27	26	1.99
30549630--30549801	80	2.2	79	81	3	193	23	20	27	28	1.99
30561021--30561230	46	4.5	47	79	5	212	30	20	26	22	1.98
30561015--30561230	94	2.3	92	88	4	301	30	20	26	22	1.98
30565900--30565935	18	2.0	18	94	0	63	36	5	25	33	1.79
30568750--30568958	48	4.4	48	76	9	189	30	18	27	23	1.98
30568750--30568958	46	4.5	46	76	7	161	30	18	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30568750--30568958	94	2.2	92	85	5	267	30	18	27	23	1.98
30572510--30572681	40	4.3	40	88	2	213	26	27	20	25	1.99
30572512--30572734	40	5.6	39	82	5	207	26	27	21	25	1.99
30572666--30572743	40	1.9	41	82	10	97	26	28	20	24	1.99
30580343--30580514	40	4.3	40	88	2	213	25	27	22	25	2.00
30580345--30580567	40	5.6	39	82	5	207	25	26	21	25	2.00
30595572--30595601	12	2.5	12	94	0	51	33	23	40	3	1.71
30595764--30595818	22	2.5	22	82	2	67	18	30	32	18	1.95
30597468--30597798	48	6.9	48	77	8	298	24	28	18	28	1.98
30597467--30597787	96	3.4	94	83	4	333	23	28	18	28	1.98
30597468--30597800	144	2.3	144	84	3	413	24	28	18	28	1.98
30599196--30599226	15	2.1	15	93	0	53	51	6	3	38	1.44
30601551--30601594	18	2.4	19	88	3	63	47	2	4	45	1.35
30604324--30604361	19	2.0	20	85	15	53	39	23	0	36	1.55
30604586--30604755	46	3.7	46	74	10	157	31	27	18	22	1.98
30618535--30618649	44	2.6	44	84	2	140	35	13	21	28	1.92
30618535--30618668	46	3.0	45	81	4	144	35	14	23	27	1.93
30620824--30621091	48	5.6	48	77	5	245	23	29	18	28	1.98
30620822--30621107	144	2.0	143	81	4	335	25	29	17	28	1.97
30622207--30622236	3	10.3	3	92	7	53	70	0	0	30	0.88
30625691--30625718	13	2.2	13	100	0	56	21	14	0	64	1.29
30627589--30627640	21	2.5	21	79	14	63	42	17	1	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30634444--30634581	23	5.9	24	73	14	83	36	22	23	16	1.94
30635051--30635138	45	2.0	45	97	0	167	42	14	5	37	1.70
30635672--30635728	30	2.0	30	86	6	82	22	21	0	56	1.43
30641635--30641673	21	1.9	20	89	5	60	43	2	2	51	1.29
30645625--30645678	26	2.1	26	100	0	108	64	7	7	20	1.43
30645662--30645700	17	2.4	16	83	16	53	71	0	15	12	1.14
30645637--30645692	26	2.2	26	80	6	60	71	3	10	14	1.26
30647266--30647298	7	4.7	7	100	0	66	27	30	0	42	1.56
30648465--30648489	11	2.3	11	100	0	50	52	0	8	40	1.31
30652524--30652570	24	2.0	23	83	4	58	14	4	10	70	1.31
30653758--30653812	13	4.2	12	80	15	56	10	12	3	72	1.24
30653777--30653813	17	2.2	17	95	0	65	8	13	0	78	0.96
30658196--30658279	41	2.0	41	100	0	168	25	28	16	29	1.97
30659228--30659268	20	2.0	20	95	0	73	48	0	17	34	1.47
30660392--30660419	10	2.8	10	100	0	56	28	10	21	39	1.87
30671740--30671799	30	2.0	30	93	0	102	55	11	5	28	1.57
30671832--30671874	22	2.0	22	85	0	59	55	9	13	20	1.66
30678802--30678900	28	3.5	29	86	9	125	27	15	28	29	1.96
30684458--30684581	49	2.5	49	84	6	162	25	26	18	29	1.98
30684604--30684818	94	2.3	92	83	7	263	22	28	19	29	1.98
30684604--30684818	46	4.6	48	74	10	176	22	28	19	29	1.98
30690887--30690931	3	15.0	3	100	0	90	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30691174--30691258	19	4.4	19	75	11	75	63	0	1	35	1.02
30691232--30691273	19	2.3	19	91	4	68	73	0	4	21	1.01
30691482--30691658	9	19.0	9	67	20	62	30	3	3	61	1.32
30691588--30691670	9	8.6	10	75	9	66	28	3	3	63	1.28
30691588--30691676	19	4.8	19	73	17	71	28	3	3	65	1.25
30691588--30691667	29	2.8	29	83	7	92	28	3	3	63	1.29
30693674--30693755	39	2.1	39	93	0	137	23	17	14	45	1.85
30704067--30704107	22	1.9	22	95	5	75	21	29	39	9	1.86
30709980--30710032	26	2.0	26	100	0	106	18	30	30	20	1.97
30716504--30716738	40	5.9	40	89	3	339	25	28	22	23	2.00
30724738--30724940	40	5.1	40	87	3	277	24	28	23	23	2.00
30734001--30734035	13	2.7	13	86	0	52	65	0	11	22	1.24
30734315--30734359	23	2.0	23	83	12	58	60	2	2	35	1.22
30736955--30737042	45	2.0	45	97	0	167	37	23	11	27	1.89
30742044--30742175	40	3.3	40	92	4	214	27	27	21	24	1.99
30762149--30762202	18	3.0	18	100	0	108	33	11	22	33	1.89
30769862--30769934	31	2.4	30	82	8	78	38	4	17	39	1.69
30786976--30787018	18	2.4	17	81	11	50	27	2	18	51	1.59
30800387--30800488	19	5.3	19	84	9	118	50	5	0	42	1.33
30801821--30801948	10	13.3	10	75	8	86	45	6	5	42	1.52
30801816--30801948	4	33.5	4	79	1	115	45	6	6	42	1.53
30806975--30807158	40	4.6	40	83	6	205	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30806975--30807155	80	2.3	81	84	9	230	23	21	27	27	1.99
30825823--30825873	26	2.0	26	84	7	68	45	29	7	17	1.77
30828555--30828667	27	4.2	26	84	8	136	15	23	23	37	1.93
30828555--30828667	55	2.1	54	86	5	156	15	23	23	37	1.93
30832705--30832808	40	2.6	40	80	3	120	35	23	14	26	1.93
30838600--30838638	19	2.1	19	100	0	78	20	15	15	48	1.81
30847116--30847262	43	3.4	42	76	10	120	26	17	23	32	1.97
30847111--30847249	42	3.2	43	75	15	126	25	16	23	34	1.95
30849306--30849366	26	2.3	27	80	11	72	31	27	13	27	1.94
30849669--30849714	20	2.3	21	82	14	62	26	17	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333