Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  300  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98910211--98910410
41
4.8
41
83
2
231
18
21
27
33
1.96
98910211--98910392
82
2.2
83
88
1
258
17
22
27
32
1.96
98914987--98915024
3
13.0
3
94
5
69
31
0
68
0
0.90
98916868--98916897
13
2.4
13
94
5
53
13
0
0
86
0.57
98918451--98918483
14
2.4
14
85
15
50
27
15
6
51
1.66
98921139--98921168
15
2.0
15
100
0
60
40
13
20
26
1.89
98935508--98935555
3
16.3
3
79
12
55
64
2
2
31
1.16
98951226--98951401
46
3.8
46
78
4
192
21
21
28
28
1.98
98951223--98951393
93
1.8
93
92
0
288
22
21
28
27
1.99
98954334--98954413
15
5.4
15
78
12
85
11
17
12
58
1.62
98956800--98956975
46
3.8
46
77
4
192
22
21
28
27
1.99
98956797--98956968
93
1.8
93
92
0
290
22
22
28
26
1.99
98963739--98963885
43
3.4
43
81
3
154
30
21
16
31
1.95
98965638--98965748
43
2.6
43
85
2
143
30
27
16
25
1.96
98966086--98966219
66
2.0
66
84
5
173
12
26
16
44
1.84
98975215--98975270
29
1.9
29
85
7
78
51
3
5
39
1.42
98976044--98976102
29
2.0
29
96
0
109
40
10
6
42
1.65
98976759--98976807
22
2.2
22
81
0
53
22
4
30
42
1.72
98978403--98978438
9
3.9
9
89
7
54
58
5
0
36
1.22
98978403--98978438
19
1.9
19
88
5
56
58
5
0
36
1.22
98978839--98978957
31
3.6
31
80
13
123
39
3
3
53
1.34
98978880--98978968
31
2.9
31
90
6
130
35
3
5
55
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98979542--98979571
12
2.5
12
94
0
51
13
43
23
20
1.86
98985619--98985663
18
2.4
20
82
14
60
48
4
15
31
1.65
98987074--98987102
11
2.6
11
100
0
58
37
17
10
34
1.84
98993730--98993789
31
1.9
31
93
0
102
70
1
5
23
1.16
98993863--98993888
10
2.6
10
100
0
52
50
0
0
50
1.00
98999258--98999305
23
2.1
24
85
11
66
58
2
0
39
1.10
99005339--99005431
18
5.2
18
86
0
123
33
15
22
29
1.94
99005339--99005431
36
2.6
36
87
0
141
33
15
22
29
1.94
99010519--99010581
30
2.1
31
85
8
85
73
0
19
7
1.08
99013121--99013543
74
6.0
67
78
13
388
60
3
7
28
1.39
99013158--99013207
20
2.5
20
78
21
59
66
4
4
26
1.27
99013333--99013447
36
3.1
35
67
18
99
60
2
7
29
1.39
99013236--99013547
74
4.3
73
88
1
446
61
2
7
28
1.38
99016438--99016497
6
10.0
6
96
0
93
55
0
0
45
0.99
99016613--99016678
32
2.1
32
97
0
123
54
4
9
31
1.52
99018664--99018749
10
8.9
10
68
15
56
25
4
0
69
1.07
99018649--99018749
29
3.5
29
77
9
100
26
4
0
68
1.10
99018664--99018751
9
9.3
9
68
18
54
26
4
0
69
1.08
99018660--99018749
29
3.1
28
79
9
101
24
5
0
70
1.09
99018667--99018749
19
4.3
19
73
16
73
25
4
0
69
1.07
99018838--99018873
16
2.2
17
95
5
65
30
2
0
66
1.06
99018865--99018901
19
1.9
19
88
0
56
48
2
0
48
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99021285--99021344
19
3.3
18
71
19
61
38
1
8
51
1.42
99021468--99021544
35
2.2
34
81
11
84
63
5
1
29
1.24
99021635--99021691
26
2.2
25
79
14
62
52
1
1
43
1.21
99025928--99025953
7
3.7
7
100
0
52
11
0
0
88
0.52
99027062--99027095
10
3.4
10
83
0
50
50
2
2
44
1.32
99027200--99027232
16
2.0
17
88
5
50
45
9
0
45
1.35
99026961--99028211
242
5.0
253
80
8
1272
45
6
9
38
1.63
99027894--99027938
16
2.6
17
89
6
65
62
2
0
35
1.08
99026973--99028282
492
2.7
489
79
9
1221
45
6
9
38
1.63
99031453--99031487
17
2.1
17
88
0
52
62
0
0
37
0.95
99032369--99032415
23
2.0
23
84
8
60
51
2
0
46
1.13
99032575--99032616
21
2.0
21
85
0
57
78
2
11
7
1.04
99034243--99034304
30
2.1
30
90
0
97
58
11
6
24
1.56
99034953--99034983
14
2.2
14
94
0
53
19
6
12
61
1.53
99035120--99035159
18
2.2
18
86
8
55
30
0
2
67
1.04
99035944--99035980
19
1.9
19
88
0
56
43
2
16
37
1.62
99036152--99036185
16
2.0
18
88
11
54
38
0
2
58
1.13
99036434--99036497
31
2.0
32
85
8
87
45
0
7
46
1.32
99036291--99036587
142
2.1
142
80
5
325
46
3
10
40
1.54
99037398--99037450
15
3.6
15
80
12
65
35
0
11
52
1.37
99037687--99037717
12
2.5
12
94
5
53
35
0
22
41
1.54
99043991--99044492
44
11.4
44
61
15
117
22
23
20
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99043991--99044673
88
7.8
88
84
2
836
22
23
20
32
1.98
99044742--99044866
64
2.0
64
86
0
178
38
18
14
28
1.90
99049279--99049330
25
2.1
25
96
0
95
51
3
9
34
1.53
99051946--99051984
19
2.1
19
85
9
53
43
0
5
51
1.24
99057026--99057058
12
2.9
11
91
8
57
27
18
27
27
1.98
99058901--99058937
19
1.9
19
88
0
56
35
5
0
59
1.20
99072329--99072817
256
1.9
256
90
1
775
34
12
18
34
1.88
99077153--99077251
28
3.7
28
84
13
136
38
14
21
26
1.91
99077275--99077528
51
4.9
51
91
1
391
30
13
24
30
1.94
99080643--99080744
32
3.2
32
68
18
104
46
3
17
32
1.67
99080620--99080745
63
2.0
63
98
0
243
45
3
19
32
1.66
99083485--99083509
12
2.1
12
100
0
50
32
28
8
32
1.86
99084491--99084667
50
3.5
50
89
0
273
35
15
22
26
1.94
99084643--99084752
31
3.5
31
93
0
184
27
19
28
25
1.98
99084778--99084981
47
4.4
46
81
7
191
29
14
26
29
1.95
99084860--99084965
49
2.2
48
91
3
167
29
12
27
31
1.93
99084921--99085032
42
2.7
42
84
2
145
31
15
25
27
1.95
99088424--99088546
46
2.7
46
98
0
237
23
26
21
28
1.99
99096091--99096142
21
2.5
21
90
0
77
30
28
7
32
1.85
99100040--99100137
26
3.9
25
76
7
92
64
5
4
26
1.33
99102477--99102518
22
1.9
22
90
9
68
33
4
2
59
1.31
99103722--99103761
11
3.6
11
82
0
53
20
7
7
65
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99103944--99103983
18
2.2
18
86
8
55
20
0
12
67
1.22
99117069--99117118
20
2.5
20
86
3
73
24
10
12
54
1.67
99119483--99119516
16
2.1
17
88
5
52
14
0
2
82
0.79
99120631--99120821
71
2.7
71
84
9
248
33
19
16
30
1.94
99120795--99120849
25
2.2
25
83
9
67
45
7
14
32
1.72
99120853--99121132
73
3.9
72
90
2
395
32
19
17
30
1.95
99120884--99121132
73
3.4
72
93
1
408
31
19
17
31
1.95
99121065--99121310
88
2.8
86
84
4
287
34
19
17
28
1.95
99121537--99121868
76
4.5
73
84
7
400
32
20
15
31
1.94
99121531--99121886
148
2.4
146
84
6
459
34
19
15
30
1.92
99121886--99122060
70
2.5
70
85
4
212
33
22
15
28
1.94
99143878--99143998
46
2.6
46
89
0
188
28
28
23
19
1.98
99143878--99144017
46
3.0
45
72
13
115
27
29
22
20
1.98
99147114--99147143
15
1.9
16
93
6
53
70
0
30
0
0.88
99148595--99148680
21
4.1
21
86
0
100
16
22
25
36
1.94
99149585--99149680
25
3.8
25
78
0
102
32
21
22
22
1.98
99149581--99149680
50
2.0
50
86
0
137
34
21
22
23
1.97
99159278--99159485
111
1.9
109
89
3
321
40
11
8
39
1.72
99162541--99162581
16
2.7
16
88
7
59
60
4
0
34
1.18
99162857--99162965
10
11.3
10
66
18
52
60
0
3
34
1.21
99162857--99163000
20
7.5
19
67
20
68
61
0
4
34
1.20
99162852--99162934
28
2.9
29
84
10
100
65
0
4
30
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99162857--99162934
10
8.2
10
74
17
60
64
0
3
32
1.12
99162900--99163030
20
6.7
19
67
11
68
57
0
4
37
1.25
99163236--99163442
20
10.6
19
71
12
100
37
5
1
54
1.36
99163348--99163432
18
4.5
19
68
10
57
42
3
0
54
1.17
99163405--99163489
19
4.5
19
79
8
93
30
3
1
64
1.17
99163405--99163500
18
5.0
19
73
15
81
32
3
1
63
1.17
99167515--99167569
16
3.4
16
89
0
74
36
1
27
34
1.68
99167555--99167643
44
2.0
46
86
8
130
32
5
24
37
1.79
99167800--99167874
12
6.8
11
73
22
61
52
1
0
46
1.09
99167816--99167874
22
2.7
21
85
15
75
49
1
0
49
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333