Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  276  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91387901--91387957
19
2.9
19
78
2
60
59
1
0
38
1.08
91387899--91387942
10
4.4
10
82
8
54
65
2
0
31
1.05
91387939--91387989
19
2.9
17
75
11
57
50
0
1
47
1.12
91388198--91388244
20
2.6
18
78
15
51
57
4
4
34
1.38
91388491--91388592
30
3.4
30
67
12
84
30
10
13
45
1.78
91388494--91388619
59
2.1
59
89
2
191
32
11
13
42
1.79
91389732--91389784
27
2.0
26
85
10
72
32
9
9
49
1.67
91400338--91400370
11
2.9
12
86
13
52
33
0
0
66
0.92
91400498--91400552
28
2.0
27
86
13
76
58
9
0
32
1.30
91400590--91400629
11
3.6
11
82
0
53
57
5
15
22
1.57
91401656--91401723
12
5.7
12
85
3
75
73
2
7
16
1.18
91401669--91401723
6
9.2
6
93
0
65
74
1
7
16
1.12
91401656--91401723
18
3.8
18
82
3
75
73
2
7
16
1.18
91403283--91403328
7
6.7
7
83
14
51
76
2
6
15
1.09
91403289--91403325
8
4.9
8
93
3
51
78
0
8
13
0.96
91407859--91407966
26
4.2
26
93
0
189
30
6
25
37
1.81
91409558--91409698
27
5.2
28
79
11
161
19
23
22
34
1.96
91409556--91409698
54
2.6
54
88
2
207
18
23
22
34
1.96
91415230--91415367
40
3.6
39
71
9
131
20
18
24
36
1.94
91424277--91424363
40
2.2
40
77
4
95
25
17
24
33
1.96
91424680--91424738
31
1.9
30
86
10
84
47
1
20
30
1.60
91429404--91429475
26
2.8
26
93
0
117
33
8
22
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91431065--91431201
27
5.1
27
79
15
158
20
24
20
34
1.96
91431065--91431201
54
2.5
54
91
2
213
20
24
20
34
1.96
91431065--91431219
81
1.9
80
81
11
183
21
25
19
34
1.96
91436759--91436877
57
2.1
58
95
1
213
44
10
19
26
1.82
91440039--91440107
35
2.0
35
82
5
86
13
10
14
62
1.55
91442483--91442559
37
2.1
37
82
2
93
33
1
22
42
1.62
91443375--91443503
54
2.4
55
82
2
161
32
18
10
37
1.86
91444804--91444878
39
1.9
39
97
0
141
16
16
38
29
1.90
91444813--91444896
39
2.2
39
85
8
109
19
21
33
26
1.97
91454804--91454835
13
2.5
13
94
0
55
34
15
0
50
1.45
91457265--91457326
19
3.3
19
76
14
65
41
1
12
43
1.53
91461197--91461236
5
8.4
5
88
5
57
15
2
0
82
0.77
91465654--91465686
17
1.9
17
100
0
66
12
6
0
81
0.85
91469987--91470094
26
4.2
26
95
0
198
32
7
25
35
1.84
91473490--91473568
37
2.1
37
88
0
113
25
30
18
25
1.98
91473687--91473871
47
3.9
47
92
0
289
28
31
8
31
1.86
91477331--91477386
27
2.1
27
100
0
112
44
14
10
30
1.79
91479087--91479121
16
2.2
16
90
10
54
17
5
2
74
1.14
91479599--91479667
31
2.2
32
94
2
122
18
15
14
50
1.78
91479641--91479686
19
2.4
19
88
0
65
19
21
15
43
1.87
91480386--91480833
87
5.2
87
85
1
488
39
20
17
21
1.92
91480386--91480842
130
3.5
129
79
3
350
40
21
17
21
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91480386--91480834
43
10.4
43
78
3
416
39
20
17
21
1.92
91487629--91487679
21
2.5
20
84
12
59
35
3
1
58
1.28
91488527--91488573
24
2.0
24
83
8
60
57
27
6
8
1.53
91488539--91488714
88
2.0
88
100
0
352
38
17
10
34
1.83
91492542--91492638
40
2.5
40
81
3
117
38
35
14
12
1.84
91494707--91494865
33
4.8
33
76
9
146
47
18
16
17
1.83
91494707--91494867
66
2.5
66
82
1
180
47
18
16
17
1.83
91505891--91506376
244
2.0
244
93
0
837
27
22
22
27
1.99
91512321--91512375
29
1.9
29
85
10
78
16
20
41
21
1.90
91513132--91513287
43
3.6
43
85
1
206
28
20
18
32
1.96
91513797--91513852
27
2.1
27
96
0
103
28
0
21
50
1.49
91515653--91515714
31
2.0
31
100
0
124
38
29
19
12
1.89
91521453--91521499
20
2.3
21
79
20
55
68
8
14
8
1.39
91523029--91523060
13
2.5
13
94
0
55
0
18
0
81
0.70
91524364--91524404
22
2.0
20
85
9
55
7
14
0
78
0.96
91531342--91531383
20
2.1
20
86
0
57
52
9
9
28
1.65
91534542--91534717
46
3.8
46
79
14
209
20
20
29
29
1.98
91534539--91534710
93
1.8
93
95
2
310
20
20
29
28
1.98
91539564--91539600
12
3.1
12
88
11
58
16
0
27
56
1.40
91542844--91542879
13
2.7
13
86
4
54
66
0
33
0
0.92
91543227--91543773
104
5.3
103
79
9
607
29
0
14
55
1.45
91543227--91543773
207
2.6
208
85
7
724
29
0
14
55
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91545843--91545939
46
2.1
46
87
11
137
16
46
11
25
1.80
91546107--91546296
75
2.6
73
84
7
224
28
5
12
52
1.62
91549462--91549517
27
2.1
27
82
0
67
28
26
28
16
1.97
91549538--91549594
25
2.3
25
93
3
98
29
19
17
33
1.95
91549643--91549683
21
1.9
22
90
5
66
75
2
0
21
0.92
91552191--91552236
21
2.1
22
88
4
67
19
23
26
30
1.98
91560529--91560557
7
4.3
7
91
8
51
55
0
0
44
0.99
91561242--91561298
17
3.4
16
77
15
53
68
0
22
8
1.17
91562137--91562174
6
6.3
6
93
0
67
18
15
15
50
1.79
91563132--91563187
22
2.5
22
85
5
69
23
32
26
17
1.97
91563152--91563194
22
2.0
22
85
0
59
23
32
27
16
1.96
91565479--91565531
21
2.5
22
76
11
56
32
18
7
41
1.79
91565779--91565888
58
1.9
58
81
5
134
28
22
20
28
1.99
91566132--91566177
17
2.7
18
76
10
60
19
15
21
43
1.87
91574619--91574667
25
2.0
25
87
0
71
26
26
20
26
1.99
91577441--91577539
28
3.5
28
84
4
110
27
14
27
31
1.95
91580304--91580336
17
2.0
17
88
5
50
54
0
3
42
1.15
91580306--91580358
4
12.8
4
76
7
52
49
1
1
47
1.23
91581592--91581620
14
2.1
14
100
0
58
58
6
0
34
1.25
91584195--91584315
61
2.0
61
81
3
145
23
17
34
24
1.96
91584751--91584828
40
2.0
40
86
0
111
21
14
30
33
1.93
91592813--91592856
23
1.9
23
81
9
54
29
13
6
50
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91593975--91594044
33
2.1
33
94
0
122
30
18
15
35
1.92
91596451--91596627
50
3.5
50
91
0
273
36
16
22
24
1.94
91596603--91596781
31
5.8
31
91
2
288
26
20
28
25
1.99
91596800--91596921
47
2.7
46
83
10
151
26
16
27
29
1.97
91597609--91597659
23
2.2
23
100
0
102
43
7
15
33
1.76
91606890--91607050
25
6.4
25
82
2
180
23
16
24
36
1.94
91610303--91610332
14
2.1
14
93
0
51
53
0
10
36
1.35
91611093--91611367
134
2.0
135
90
3
439
18
28
6
46
1.74
91613772--91613829
25
2.3
24
82
11
64
27
18
29
24
1.98
91621377--91621416
18
2.3
18
86
4
55
40
7
10
42
1.67
91622075--91622100
6
4.3
6
100
0
52
0
15
0
84
0.62
91622215--91622282
30
2.3
30
87
5
93
47
11
10
30
1.74
91624994--91625169
77
2.3
77
85
2
228
22
6
21
50
1.70
91625899--91625955
20
2.8
21
78
10
64
33
36
8
21
1.84
91625898--91625955
21
2.8
21
79
10
66
32
37
8
20
1.83
91626679--91626813
63
2.1
63
91
0
216
46
20
10
22
1.81
91629203--91629255
23
2.3
22
78
15
54
26
11
1
60
1.41
91629297--91629374
37
2.1
35
81
11
86
38
12
10
38
1.78
91642409--91642433
12
2.1
12
100
0
50
16
24
8
52
1.70
91644382--91644429
20
2.5
20
86
10
64
66
2
6
25
1.26
91646845--91646904
26
2.4
24
83
8
75
28
0
3
68
1.05
91647055--91647095
21
2.0
20
85
4
55
19
56
21
2
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91647334--91647378
23
2.0
23
86
8
65
64
0
31
4
1.13
91651955--91651988
17
2.0
17
88
0
50
29
0
8
61
1.26
91652488--91652523
18
1.9
18
88
5
54
77
0
22
0
0.76
91656707--91656889
79
2.3
80
82
7
221
26
27
21
24
2.00
91656686--91656889
40
5.1
40
80
8
229
25
27
21
25
1.99
91672324--91672348
13
1.9
13
100
0
50
16
4
16
64
1.44
91673055--91673169
46
2.5
44
88
6
169
25
18
31
25
1.97
91673246--91673363
55
2.3
48
84
13
141
28
20
26
24
1.99
91673053--91673317
146
1.9
140
83
7
345
26
19
29
25
1.98
91677172--91677373
46
4.3
46
80
9
207
28
18
29
23
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333