genome.fa.s3.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  117  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37895862--37896329	47	10.0	47	91	0	711	26	30	11	31	1.92
37895992--37896069	22	3.4	22	68	22	70	24	33	12	29	1.92
37895969--37896095	25	5.3	25	62	24	76	28	29	11	30	1.91
37899294--37899357	28	2.3	28	89	5	94	34	28	7	29	1.85
37899463--37899544	28	3.0	27	80	7	94	19	25	23	31	1.98
37899463--37899542	27	2.9	28	81	7	92	20	26	22	31	1.98
37900637--37900670	10	3.3	10	84	8	50	29	8	8	52	1.62
37907156--37907219	28	2.3	28	91	5	103	32	29	7	29	1.86
37907325--37907414	27	3.2	28	81	7	112	18	24	24	32	1.97
37907335--37907425	27	3.2	28	81	4	94	20	26	20	31	1.98
37907325--37907439	55	2.1	56	82	8	137	18	24	22	34	1.96
37910026--37910117	45	2.0	47	87	4	134	33	13	21	31	1.92
37910035--37910125	23	4.0	23	72	11	80	32	14	23	29	1.94
37910028--37910124	46	2.1	46	84	3	124	34	14	22	28	1.94
37916597--37916797	53	3.8	52	75	7	172	38	16	25	19	1.92
37926901--37926946	23	2.0	23	100	0	92	43	21	8	26	1.81
37928951--37929126	46	3.8	46	76	4	183	22	20	27	28	1.99
37928947--37929118	93	1.8	93	89	0	272	22	20	28	27	1.99
37934275--37934459	44	4.3	43	77	10	171	32	25	19	22	1.97
37934381--37934476	44	2.2	44	90	0	147	33	27	17	21	1.96
37935884--37936045	54	3.1	53	87	5	222	29	28	19	22	1.98
37935869--37936100	54	4.5	51	83	4	205	31	27	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37956920--37957010	42	2.1	43	87	2	130	31	24	17	26	1.97
37958210--37958343	27	5.0	27	85	3	171	34	17	21	26	1.95
37958218--37958343	54	2.3	54	90	0	189	34	18	22	25	1.96
37958707--37958746	20	2.0	20	90	0	62	7	12	35	45	1.70
37958970--37959095	6	20.7	6	78	12	123	17	16	15	50	1.79
37958966--37959095	67	1.9	67	87	3	190	17	16	15	50	1.78
37959012--37959093	43	1.9	43	90	5	130	15	17	15	51	1.77
37960270--37960394	6	20.3	6	70	16	78	46	13	19	20	1.83
37960296--37960366	19	3.8	19	76	10	74	43	14	22	19	1.87
37960279--37960366	37	2.4	37	86	3	106	45	12	21	20	1.84
37960295--37960394	31	3.2	31	72	10	96	45	14	20	21	1.85
37960658--37960720	22	2.9	22	75	13	67	34	22	23	19	1.96
37961233--37961534	27	11.2	27	84	3	367	27	21	15	35	1.93
37961234--37961528	81	3.7	81	88	0	439	27	21	15	35	1.94
37965285--37965376	44	2.1	44	81	0	103	19	26	15	39	1.91
37965441--37965497	21	2.7	21	89	5	89	7	3	47	42	1.47
37969138--37969263	23	5.4	23	78	9	114	32	19	20	27	1.97
37969157--37969263	24	4.7	22	75	12	99	34	18	19	27	1.95
37969135--37969272	46	3.0	46	80	7	154	31	19	21	27	1.97
37970180--37970367	99	1.9	99	85	2	259	25	18	27	29	1.98
37970123--37970368	49	4.9	50	79	3	237	25	18	27	28	1.98
37970125--37970406	150	1.9	150	85	4	390	26	17	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37977876--37978082	53	3.8	54	77	1	209	20	23	18	37	1.94
37984371--37984577	53	3.8	54	79	1	227	19	23	18	38	1.93
37985436--37985482	20	2.3	20	96	0	85	19	10	8	61	1.53
37986775--37986838	31	2.1	31	90	0	101	25	23	15	35	1.94
37987045--37987174	24	5.4	24	93	2	208	26	20	23	30	1.99
37987045--37987174	47	2.7	48	90	3	208	26	20	23	30	1.99
37987231--37987287	9	5.9	9	73	15	51	35	21	8	35	1.84
37987219--37987289	20	3.5	20	94	0	124	32	21	11	35	1.89
37987224--37987278	11	5.4	11	70	16	55	30	20	12	36	1.90
37994554--37994600	24	2.0	24	95	0	85	36	4	38	21	1.73
37996011--37996100	28	3.2	27	81	7	101	20	24	23	32	1.98
37996011--37996100	27	3.2	28	79	7	103	20	24	23	32	1.98
37996021--37996111	27	3.2	28	79	4	85	21	26	19	31	1.98
37996011--37996125	55	2.1	56	80	8	128	19	24	21	34	1.96
37997186--37997219	10	3.3	10	84	8	50	29	8	8	52	1.62
38002396--38002442	24	2.0	24	95	0	85	36	4	38	21	1.73
38003703--38003766	28	2.3	28	89	5	94	32	28	9	29	1.88
38003872--38003961	28	3.2	27	81	7	101	20	24	23	32	1.98
38003872--38003961	27	3.2	28	79	7	103	20	24	23	32	1.98
38003882--38003972	27	3.2	28	79	4	85	21	26	19	31	1.98
38003872--38003986	55	2.1	56	80	8	128	19	24	21	34	1.96
38018730--38018793	24	2.7	24	97	0	119	18	20	35	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38020406--38020457	27	2.0	26	84	3	68	34	17	26	21	1.95
38026483--38026512	14	2.1	14	93	0	51	46	13	6	33	1.69
38027795--38027877	31	2.7	31	92	3	143	28	26	15	28	1.96
38027901--38027992	42	2.2	42	94	0	157	36	22	11	28	1.90
38028133--38028183	24	2.1	24	88	0	75	25	17	23	33	1.96
38031162--38031220	27	2.2	27	84	0	73	35	23	15	25	1.94
38034715--38034749	16	2.2	16	90	10	54	17	2	2	77	1.02
38034719--38034771	24	2.1	26	86	13	76	16	3	3	75	1.10
38034714--38034757	12	3.5	13	78	12	56	15	2	4	77	1.04
38034714--38034796	28	3.0	28	75	18	77	18	4	2	74	1.10
38036327--38036357	6	5.2	6	96	0	53	3	12	0	83	0.75
38042246--38042347	29	3.6	29	79	1	116	25	15	30	28	1.96
38042246--38042356	58	1.9	57	87	1	159	27	14	29	28	1.95
38047592--38047670	37	2.1	37	90	0	122	25	31	18	24	1.98
38047789--38048519	47	15.4	47	91	2	1149	29	29	8	32	1.87
38047839--38047917	25	3.3	25	66	16	76	31	29	5	34	1.79
38047789--38048519	143	5.1	141	92	3	1167	29	29	8	32	1.87
38052594--38052653	28	2.1	29	84	6	79	38	5	11	45	1.63
38057163--38057236	24	3.0	24	90	2	121	36	5	37	20	1.76
38064711--38064803	24	3.9	24	86	0	132	36	3	37	22	1.71
38066043--38066127	32	2.6	32	76	14	75	23	20	29	27	1.99
38072723--38072857	27	5.0	27	88	1	173	35	22	11	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38073287--38073355	27	2.6	27	83	4	77	23	15	15	44	1.85
38081004--38081035	15	2.0	17	88	11	50	43	31	0	25	1.55
38082086--38082137	24	2.0	27	85	14	74	46	9	5	38	1.61
38098272--38098317	24	1.9	24	81	0	56	34	23	23	17	1.96
38101489--38101556	29	2.3	29	85	5	93	27	30	13	27	1.94
38101378--38101705	174	1.9	174	96	0	602	30	24	14	29	1.95
38101658--38101736	29	2.7	29	82	2	104	30	29	13	26	1.94
38102818--38102842	13	1.9	13	100	0	50	0	8	4	88	0.64
38109691--38109758	29	2.3	29	85	5	93	27	30	13	27	1.94
38109580--38109907	174	1.9	174	96	0	602	30	24	14	29	1.95
38109860--38109938	29	2.7	30	80	13	101	30	31	13	24	1.94
38116406--38116532	49	2.6	49	81	6	150	23	33	18	24	1.97
38116943--38117066	46	2.8	42	82	9	149	24	27	17	30	1.97
38127815--38128222	47	8.6	47	93	1	645	32	8	29	29	1.87
38127815--38128222	192	2.1	190	92	1	676	32	8	29	29	1.87
38131498--38131528	15	2.1	15	93	0	53	22	6	0	70	1.09
38133092--38133224	54	2.5	54	91	0	221	31	26	18	23	1.97
38133291--38134484	596	2.0	596	99	0	2379	31	20	11	35	1.89
38141558--38141663	27	3.9	27	80	4	124	45	20	14	19	1.85
38141653--38141896	27	9.0	27	85	4	280	25	13	19	40	1.89
38141656--38141896	81	3.0	82	85	4	319	25	14	19	41	1.89
38142219--38142291	18	4.1	18	83	0	92	20	19	15	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38142218--38142271	13	4.4	13	73	21	53	20	20	14	44	1.86
38144178--38144352	46	3.8	45	78	10	192	28	28	20	22	1.98
38144186--38144357	93	1.8	93	91	2	283	27	29	20	22	1.99
38144229--38144372	46	3.1	46	69	21	120	29	27	20	23	1.99
38151020--38151190	85	2.0	86	96	1	317	37	14	24	23	1.92
38153282--38153368	27	3.2	27	83	0	111	37	17	18	26	1.92
38153291--38153397	27	4.0	27	81	3	108	34	18	21	25	1.96
38153291--38153397	54	2.0	54	83	3	135	34	18	21	25	1.96
38154007--38154114	27	4.0	26	84	5	117	18	20	21	39	1.92
38154007--38154114	54	2.0	53	83	1	135	18	20	21	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333