genome.fa.s3.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  139  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45559284--45559450	43	3.9	42	76	9	160	23	15	28	32	1.95
45559293--45559450	85	1.9	85	84	7	214	22	16	29	31	1.96
45563958--45564031	37	2.0	37	97	0	139	39	5	10	44	1.62
45565023--45565085	26	2.4	26	79	10	65	34	23	4	36	1.76
45567239--45567462	46	5.0	45	74	17	205	24	24	15	35	1.94
45573209--45573512	40	7.7	40	88	6	415	26	27	21	25	1.99
45574589--45574613	13	1.9	13	100	0	50	0	8	4	88	0.64
45575700--45575965	46	6.0	46	85	7	352	22	24	15	38	1.92
45575879--45575954	38	2.0	38	97	0	143	23	27	18	30	1.98
45580206--45580284	9	8.8	9	97	0	131	22	10	29	37	1.87
45581484--45581573	41	2.2	40	84	5	110	34	1	7	56	1.35
45581505--45581599	41	2.3	41	81	3	102	36	4	7	51	1.49
45582883--45582916	12	2.6	14	81	18	54	0	14	50	35	1.44
45582886--45582914	12	2.4	12	100	0	58	0	13	51	34	1.42
45583818--45583865	24	2.0	24	91	0	78	20	20	20	37	1.95
45583869--45583923	29	1.9	29	85	3	76	20	43	23	12	1.86
45590699--45590812	43	2.7	42	78	2	129	31	17	22	28	1.97
45595357--45595390	16	2.1	16	94	0	59	8	5	29	55	1.54
45598067--45598116	21	2.5	20	81	15	59	56	2	4	38	1.30
45598070--45598184	10	11.4	10	71	15	69	60	0	6	32	1.27
45598079--45598240	72	2.3	71	79	14	181	58	1	6	33	1.32
45598139--45598195	19	2.6	22	71	20	57	70	0	8	21	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45598136--45598195	10	5.7	11	81	15	65	68	0	8	23	1.16
45601817--45601940	39	3.2	39	94	0	203	20	21	30	27	1.98
45607838--45607878	20	2.0	20	90	0	64	31	7	7	53	1.56
45607843--45607886	20	2.2	20	87	0	61	34	6	6	52	1.55
45632183--45632343	56	2.9	56	81	3	175	31	23	17	27	1.97
45632196--45632353	28	5.6	28	73	5	131	33	23	17	25	1.96
45633279--45633346	30	2.2	31	84	2	93	42	11	19	26	1.85
45635595--45635695	49	2.1	47	83	7	134	29	15	7	46	1.74
45637420--45637578	27	5.9	27	82	11	148	35	22	23	18	1.95
45637438--45637581	54	2.7	54	91	2	218	36	24	22	16	1.94
45639173--45639254	26	3.2	26	96	0	146	36	24	7	31	1.83
45643289--45643336	23	2.1	23	92	0	78	14	14	31	39	1.86
45645821--45645855	17	2.0	18	88	5	54	31	17	0	51	1.45
45653393--45653496	41	2.5	43	75	12	108	31	26	17	24	1.97
45659471--45659541	31	2.2	31	87	9	99	42	15	9	32	1.80
45660444--45660502	18	3.3	18	83	6	68	55	1	3	38	1.26
45660445--45660511	18	4.0	16	78	17	57	52	1	2	43	1.25
45660462--45660505	18	2.4	18	92	0	70	59	0	2	38	1.10
45660625--45660694	35	2.0	35	100	0	140	40	11	8	40	1.72
45663387--45663416	16	1.9	16	93	6	53	33	23	0	43	1.54
45663626--45663905	50	5.6	50	77	3	240	32	26	15	25	1.96
45663677--45663858	101	1.8	101	86	0	265	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45668426--45668457	14	2.4	14	90	10	50	71	3	0	25	1.00
45671709--45671818	49	2.3	48	87	6	152	29	29	18	23	1.98
45671691--45672011	46	6.8	48	76	10	220	26	28	17	27	1.98
45677043--45677068	2	13.0	2	100	0	52	0	0	50	50	1.00
45677224--45677280	15	3.9	15	86	2	80	35	0	14	50	1.42
45677195--45677278	30	2.9	28	83	11	91	32	1	14	52	1.49
45677676--45677713	20	1.9	20	94	0	67	15	28	26	28	1.96
45680378--45680657	101	2.7	101	80	7	305	35	15	9	39	1.79
45681943--45682051	36	3.2	36	64	19	99	44	4	5	44	1.47
45681937--45682065	64	2.0	64	98	0	217	47	5	4	42	1.47
45682138--45682180	22	1.9	23	85	4	61	58	4	0	37	1.19
45682467--45682565	42	2.3	43	77	16	109	35	1	1	62	1.09
45682488--45682531	19	2.4	19	82	14	56	38	0	0	61	0.96
45682493--45682591	21	4.3	23	67	21	66	35	1	2	61	1.14
45682472--45682597	32	3.7	34	77	15	127	34	0	1	63	1.10
45682479--45682556	21	3.6	23	76	13	67	34	1	1	62	1.11
45694335--45694456	43	2.9	42	80	7	140	28	24	16	30	1.96
45701250--45701380	50	2.7	50	79	9	144	25	25	20	28	1.99
45701391--45701561	46	3.7	46	76	4	182	23	29	19	27	1.98
45716323--45716547	79	2.8	80	81	11	264	26	22	26	24	2.00
45716323--45716547	40	5.7	40	87	5	271	26	22	26	24	2.00
45716323--45716547	119	1.9	120	82	9	291	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45716330--45716580	79	3.2	78	79	12	244	27	21	26	24	1.99
45727486--45727529	20	2.2	20	91	0	70	36	31	2	29	1.70
45727615--45727736	43	2.9	41	75	11	111	27	22	14	34	1.94
45730298--45730332	17	2.1	17	94	0	61	40	22	5	31	1.78
45741701--45741734	8	4.4	8	88	3	52	61	0	0	38	0.96
45741755--45741792	18	2.0	19	90	10	60	76	0	13	10	1.02
45741755--45741792	9	4.1	9	86	10	51	76	0	13	10	1.02
45742873--45742914	20	2.0	20	82	13	50	54	2	14	28	1.52
45747547--45747581	18	2.0	17	94	5	61	71	0	28	0	0.86
45747547--45747596	15	3.2	15	85	5	55	66	0	34	0	0.92
45747914--45748052	36	3.9	36	90	1	181	17	8	23	50	1.73
45747935--45747994	20	3.2	20	67	26	58	15	6	25	53	1.65
45748256--45748301	23	2.0	24	86	4	67	26	21	4	47	1.69
45749599--45749701	2	51.5	2	96	0	170	47	52	0	0	1.00
45751597--45751734	62	2.2	62	90	0	222	47	23	7	21	1.76
45752047--45752122	6	12.7	6	90	0	98	61	13	5	19	1.50
45752783--45752881	49	2.0	50	90	7	159	50	1	1	47	1.14
45756726--45756895	84	2.0	85	90	4	272	28	22	18	30	1.98
45758261--45758327	18	3.6	18	72	16	57	43	8	1	46	1.44
45765565--45765693	46	2.8	47	81	11	167	22	20	27	28	1.99
45766771--45766985	39	5.5	40	85	6	262	24	26	22	26	2.00
45766804--45766989	39	4.7	40	86	6	263	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45779127--45779242	39	3.0	39	76	0	133	31	9	18	39	1.83
45779211--45779734	37	14.4	37	77	4	469	29	15	20	35	1.93
45779185--45779734	73	7.5	74	78	3	522	29	14	20	36	1.92
45779185--45779729	110	5.0	110	80	4	492	28	15	20	35	1.92
45781351--45781379	15	1.9	15	100	0	58	48	0	17	34	1.47
45788167--45788271	54	1.9	54	100	0	210	39	22	8	29	1.84
45796242--45796272	16	1.9	16	93	0	53	22	12	25	38	1.90
45798988--45799018	12	2.7	11	90	9	53	48	0	19	32	1.49
45799006--45799053	23	2.1	22	81	11	53	60	0	12	27	1.32
45799748--45799807	20	3.0	19	79	15	68	68	1	6	23	1.22
45799748--45799800	10	5.3	10	80	13	65	69	1	7	20	1.22
45799753--45799799	24	2.0	24	83	8	60	68	2	6	23	1.24
45802689--45802864	46	3.8	46	78	10	196	21	21	29	27	1.98
45802686--45802857	93	1.8	93	92	0	290	21	22	29	26	1.99
45822698--45822819	62	2.0	62	98	0	235	31	15	22	30	1.95
45823555--45823599	15	3.2	14	90	9	58	60	0	13	26	1.34
45823555--45823594	15	2.7	15	96	3	73	60	0	15	25	1.35
45824505--45824620	58	2.0	57	83	8	146	32	13	18	34	1.91
45827268--45827372	43	2.4	43	87	3	140	20	14	28	36	1.92
45827402--45827526	63	2.0	63	96	0	232	23	17	23	36	1.95
45837015--45837069	22	2.5	21	85	11	67	27	0	23	49	1.51
45837195--45837228	16	2.2	16	89	5	52	47	0	11	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45837188--45837270	19	4.5	19	79	11	100	38	0	16	44	1.48
45837644--45837676	7	4.7	7	100	0	66	57	12	0	30	1.35
45837817--45838244	126	3.4	126	91	0	678	35	17	17	28	1.93
45840776--45840816	18	2.3	18	86	0	55	43	7	26	21	1.79
45842410--45842544	48	2.8	47	84	6	157	53	5	8	31	1.56
45842713--45842751	20	2.0	19	85	5	51	46	0	17	35	1.49
45843648--45843685	18	2.1	18	85	9	51	36	2	0	60	1.11
45846577--45846658	13	5.8	13	69	18	56	26	41	20	10	1.86
45846568--45846663	30	3.2	30	94	2	167	22	38	23	14	1.92
45847357--45847521	47	3.5	47	83	8	194	22	29	18	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333