genome.fa.s3.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  172  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56625685--56625799	29	4.0	28	82	4	131	29	14	27	27	1.95
56651196--56651458	40	6.6	39	88	5	302	24	26	22	26	2.00
56651196--56651458	79	3.3	78	84	7	293	24	26	22	26	2.00
56659228--56659451	40	5.7	40	85	7	248	24	26	21	27	1.99
56659228--56659399	79	2.2	80	86	7	235	25	27	20	26	1.99
56659266--56659451	79	2.4	79	81	8	227	24	26	21	27	1.99
56661214--56661317	48	2.2	48	94	0	190	26	9	24	39	1.86
56664149--56664213	28	2.3	28	86	0	94	38	9	23	29	1.85
56664286--56664508	39	5.7	39	89	1	313	18	21	29	30	1.97
56667323--56667385	28	2.2	28	86	5	83	34	9	25	30	1.88
56667448--56667592	39	3.7	40	87	2	188	19	21	28	30	1.97
56677308--56677354	21	2.2	21	88	0	67	36	23	21	19	1.95
56681791--56681858	29	2.3	29	80	5	75	29	32	11	26	1.92
56681961--56682039	29	2.7	30	80	13	101	29	30	16	24	1.96
56685858--56686035	27	6.6	27	84	3	205	29	28	15	26	1.96
56685879--56686034	82	1.9	81	88	3	233	29	28	15	26	1.96
56689792--56689969	27	6.6	27	80	3	178	28	15	26	29	1.96
56689793--56689948	82	1.9	81	84	3	206	28	16	26	28	1.97
56689789--56689969	82	2.2	81	80	2	202	28	16	26	29	1.96
56697817--56697991	27	6.5	27	83	3	192	25	15	28	30	1.96
56697816--56697991	53	3.3	54	81	7	207	26	15	28	30	1.96
56697817--56697970	81	1.9	80	89	4	238	25	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56697813--56697991	81	2.2	80	84	3	234	26	15	27	30	1.96
56702916--56703098	48	3.8	48	77	5	208	25	15	30	28	1.96
56703954--56703990	20	1.9	20	88	5	58	40	0	8	51	1.32
56706150--56706468	46	7.0	46	89	2	410	38	15	24	21	1.92
56706150--56706473	137	2.4	138	86	2	420	38	15	24	21	1.92
56708144--56708321	51	3.5	49	78	13	164	26	28	14	30	1.95
56708183--56708321	51	2.7	51	82	12	178	26	27	13	32	1.94
56726138--56726318	48	3.9	48	75	12	178	26	19	24	29	1.98
56728161--56728273	43	2.7	43	81	4	122	25	19	24	30	1.98
56729513--56729721	53	3.9	53	77	3	211	37	17	23	21	1.94
56731154--56731211	30	1.9	30	100	0	116	39	0	15	44	1.47
56731154--56731200	15	3.1	15	72	22	53	40	0	17	42	1.49
56731160--56731210	15	3.2	17	73	21	65	37	0	15	47	1.46
56731154--56731228	30	2.5	29	85	8	71	40	2	16	41	1.62
56732016--56732112	43	2.3	43	96	0	176	13	20	42	23	1.88
56738874--56738922	22	2.2	22	88	0	71	36	6	16	40	1.73
56746062--56746131	28	2.5	28	84	9	90	30	14	24	31	1.94
56747704--56747738	11	3.5	10	88	11	54	48	11	0	40	1.39
56751476--56751907	27	15.9	27	78	7	214	37	18	8	34	1.82
56751698--56751936	27	8.8	27	74	9	191	40	18	8	31	1.82
56751954--56752027	27	2.7	27	78	12	80	36	21	20	21	1.95
56753272--56753342	20	3.5	20	92	0	115	36	11	21	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56753389--56753554	25	6.9	24	91	3	246	27	21	23	28	1.99
56753774--56753837	31	2.1	31	90	0	101	37	14	23	25	1.92
56771192--56771266	38	2.0	38	94	0	132	21	26	9	42	1.83
56776500--56776534	6	5.8	6	86	0	52	17	2	0	80	0.84
56781990--56782063	34	2.2	34	87	0	103	31	27	13	28	1.94
56782118--56782182	27	2.4	27	92	0	103	21	26	13	38	1.91
56782272--56782388	31	3.8	31	88	0	180	27	28	17	26	1.98
56782390--56782493	33	3.2	33	82	4	113	27	23	12	36	1.91
56784190--56784250	31	2.0	30	83	3	77	59	3	0	37	1.14
56788597--56788738	63	2.3	63	92	2	232	23	28	16	31	1.96
56788758--56788908	68	2.3	64	80	10	153	26	27	16	29	1.97
56793041--56793224	68	2.8	64	86	5	237	25	27	16	30	1.96
56793859--56793919	30	2.0	30	83	0	77	34	22	4	37	1.76
56795683--56795720	15	2.5	15	87	8	51	50	7	21	21	1.74
56799436--56799713	96	3.0	95	78	14	294	26	23	20	28	1.99
56799530--56799706	48	3.7	48	84	3	232	27	24	20	27	1.99
56802448--56802510	28	2.3	27	81	8	72	34	4	1	58	1.29
56812763--56812806	22	2.0	22	90	0	70	34	15	15	34	1.90
56814392--56814423	16	1.9	17	93	6	57	43	0	3	53	1.16
56814564--56814627	32	2.0	32	90	0	101	46	7	3	42	1.48
56815522--56815561	18	2.2	18	100	0	80	0	25	0	75	0.81
56832402--56832449	22	2.0	25	84	11	66	8	6	29	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56835148--56835369	40	5.6	40	91	1	349	28	25	22	23	1.99
56839738--56839782	17	2.7	17	93	3	74	53	11	0	35	1.37
56846554--56846869	47	6.7	49	71	14	157	24	28	19	27	1.99
56849902--56849992	46	2.0	46	91	0	146	29	25	20	24	1.99
56852748--56852784	15	2.5	15	86	0	56	59	13	16	10	1.61
56855279--56855305	14	1.9	14	100	0	54	14	22	37	25	1.93
56861009--56861219	40	5.2	40	87	3	269	23	24	27	25	2.00
56861013--56861199	83	2.3	80	88	4	268	23	24	27	24	2.00
56862756--56862852	29	3.5	27	83	5	97	30	27	14	26	1.95
56862756--56862852	27	3.5	28	84	5	117	30	27	14	26	1.95
56873323--56873500	46	3.8	46	78	7	189	29	25	20	23	1.99
56876954--56877203	40	6.3	40	79	9	210	25	21	27	25	1.99
56882423--56882459	6	6.5	6	81	12	51	83	0	16	0	0.64
56882423--56882459	17	2.2	17	90	0	56	83	0	16	0	0.64
56883719--56883856	40	3.5	40	89	3	190	23	23	28	23	2.00
56886538--56886675	40	3.5	40	85	4	174	23	23	28	24	2.00
56891198--56891447	40	6.3	41	83	5	239	24	23	27	24	2.00
56898694--56898826	49	2.7	49	78	6	144	27	21	27	23	1.99
56898798--56898889	45	2.0	45	93	0	157	27	16	25	31	1.96
56914267--56914483	46	4.7	46	75	11	178	25	29	17	27	1.97
56920051--56920086	17	2.1	17	100	0	72	22	36	5	36	1.78
56920694--56920733	21	2.0	21	90	5	64	25	27	35	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56921842--56922008	46	3.6	47	77	8	132	27	27	16	28	1.97
56921888--56922012	46	2.7	46	78	9	137	27	27	16	28	1.97
56924099--56924158	15	4.0	15	84	0	75	55	15	18	11	1.70
56926970--56927025	27	2.1	27	100	0	112	39	14	17	28	1.89
56927654--56927683	16	1.9	15	93	6	51	33	23	0	43	1.54
56927894--56928069	50	3.5	49	77	6	183	29	27	19	23	1.98
56932139--56932165	12	2.2	12	100	0	54	51	7	0	40	1.30
56932645--56932822	27	6.6	27	82	3	196	27	15	28	29	1.96
56932646--56932801	82	1.9	81	89	3	242	27	15	28	28	1.96
56932642--56932822	82	2.2	81	84	2	238	27	15	27	29	1.96
56932727--56932833	27	3.9	27	82	1	70	27	14	28	29	1.96
56940395--56940421	12	2.2	12	100	0	54	51	7	0	40	1.30
56940903--56941080	27	6.6	27	82	3	196	27	15	28	29	1.96
56940904--56941059	82	1.9	81	89	3	242	27	15	28	28	1.96
56940900--56941080	82	2.2	81	84	2	238	27	15	27	29	1.96
56940985--56941091	27	3.9	27	82	1	70	27	14	28	29	1.96
56942432--56942542	54	2.0	55	91	1	179	24	23	15	36	1.93
56942521--56942642	47	2.6	47	94	2	210	25	23	13	37	1.91
56949321--56949829	49	10.6	49	92	2	761	29	29	7	33	1.85
56949512--56949643	27	5.3	27	61	23	81	30	28	6	35	1.81
56949321--56949829	145	3.5	144	90	2	767	29	29	7	33	1.85
56963584--56963610	12	2.2	12	100	0	54	51	7	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56964089--56964262	27	6.6	27	80	9	187	27	15	28	28	1.96
56964089--56964262	53	3.3	55	82	6	207	27	15	28	28	1.96
56964090--56964241	80	1.9	79	88	6	227	27	15	28	28	1.96
56965600--56965709	53	2.0	55	89	3	170	24	23	15	36	1.94
56965688--56965809	47	2.6	47	94	2	210	25	23	13	37	1.91
56972394--56972902	49	10.6	49	92	2	761	29	29	7	33	1.85
56972585--56972716	27	5.3	27	61	23	81	30	28	6	35	1.81
56972394--56972902	145	3.5	144	90	2	767	29	29	7	33	1.85
56976325--56976683	40	9.1	40	92	1	535	26	28	20	24	1.99
56976325--56976683	158	2.3	160	89	1	544	26	28	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333