genome.fa.s3.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  102  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32606900--32607012	42	2.9	38	80	10	122	41	28	7	22	1.81
32607357--32607497	38	4.0	38	73	17	131	60	9	25	4	1.45
32607364--32607513	66	2.3	66	94	2	257	63	8	25	3	1.37
32607371--32607534	66	2.6	62	85	8	224	60	9	26	3	1.44
32607476--32607520	23	2.0	23	86	0	63	57	8	31	2	1.41
32608905--32609228	43	7.6	43	81	2	361	25	16	28	30	1.96
32608905--32609228	85	3.8	86	81	4	354	25	16	28	30	1.96
32613154--32613223	37	1.9	35	83	11	88	41	1	2	54	1.24
32613154--32613263	19	5.9	18	67	19	57	40	1	3	53	1.29
32613156--32613384	130	1.8	127	83	10	290	42	2	3	51	1.34
32620178--32620247	27	2.6	27	95	2	113	31	28	12	27	1.93
32620178--32620275	28	3.5	28	90	2	135	31	28	13	26	1.94
32626698--32627820	47	23.6	47	93	2	1850	33	8	29	29	1.86
32626698--32627820	96	11.8	94	93	2	1850	33	8	29	29	1.86
32626698--32627820	239	4.7	237	95	1	1885	33	8	29	29	1.86
32630973--32631154	49	3.7	49	86	2	274	28	26	19	24	1.99
32630973--32631159	100	1.9	100	97	0	356	28	26	20	24	1.99
32633814--32633838	13	1.9	13	100	0	50	8	32	32	28	1.86
32634119--32634195	36	2.1	36	95	0	136	29	23	12	33	1.92
32636166--32636357	40	4.8	40	90	1	190	27	27	21	24	1.99
32636137--32636356	80	2.8	80	79	4	239	28	26	21	23	1.99
32639357--32639403	18	2.5	19	82	6	60	76	2	4	17	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32639359--32639403	6	7.3	6	80	5	54	77	2	4	15	1.02
32641450--32641494	23	1.9	24	86	4	65	24	24	11	40	1.87
32641563--32641817	55	4.8	53	74	12	199	22	25	16	36	1.94
32646261--32646436	56	3.1	56	96	0	325	44	9	23	22	1.81
32647566--32647748	79	2.3	81	82	7	214	23	22	28	25	1.99
32647567--32647750	40	4.6	40	81	9	198	23	22	28	25	1.99
32647619--32647783	79	2.1	79	80	6	192	24	20	28	26	1.99
32657946--32658106	48	3.4	47	83	5	216	28	27	15	28	1.96
32660641--32660820	6	29.8	6	75	17	169	48	14	17	19	1.81
32660621--32660796	30	5.8	30	81	10	157	48	14	17	19	1.81
32660938--32661003	27	2.5	26	85	7	87	37	22	22	16	1.93
32660938--32661011	27	2.8	27	78	13	82	36	21	24	17	1.95
32661177--32661234	22	2.6	22	86	0	71	34	22	24	18	1.96
32661322--32661403	27	3.1	26	85	5	101	37	19	21	20	1.94
32661603--32661797	27	7.3	27	82	1	221	26	19	18	35	1.95
32661605--32661797	80	2.4	81	84	1	244	26	19	18	35	1.95
32661656--32661825	80	2.1	80	81	4	200	28	18	18	34	1.94
32661802--32662325	27	19.4	27	84	3	642	39	8	23	28	1.84
32664028--32664105	15	5.2	15	76	6	86	57	15	15	11	1.65
32667028--32667199	93	1.8	93	93	0	299	27	30	21	20	1.98
32667020--32667195	46	3.8	46	81	4	219	28	30	21	20	1.98
32675562--32675838	145	1.9	145	97	0	527	31	24	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32677421--32677461	21	2.0	21	90	0	64	24	7	41	26	1.81
32680752--32680783	17	1.9	16	93	6	55	34	6	21	37	1.79
32684393--32684524	67	2.0	65	86	2	183	43	16	6	32	1.74
32686755--32686786	17	1.9	17	93	6	57	0	12	0	87	0.54
32686753--32686787	18	1.9	18	94	0	61	0	11	0	88	0.51
32689914--32690028	57	2.0	58	93	1	196	33	10	14	41	1.80
32692025--32692066	22	1.9	22	90	0	66	28	19	33	19	1.96
32692274--32692313	21	1.9	21	89	0	62	47	20	7	25	1.75
32696060--32696113	18	3.1	18	83	2	65	35	27	20	16	1.94
32696103--32696145	17	2.5	18	82	17	56	34	37	16	11	1.85
32703929--32703957	14	2.1	14	100	0	58	34	0	20	44	1.52
32707029--32707152	38	3.3	38	91	0	194	30	25	23	20	1.99
32710413--32710457	3	15.0	3	100	0	90	66	33	0	0	0.92
32711400--32711481	32	2.6	30	84	11	94	48	6	2	42	1.41
32713885--32713926	17	2.4	18	88	11	70	28	35	16	19	1.93
32719373--32719420	21	2.3	21	92	0	78	10	18	14	56	1.66
32720292--32720321	14	2.1	14	100	0	60	33	46	13	6	1.69
32725417--32725446	14	2.1	14	100	0	60	33	46	13	6	1.69
32735548--32735597	25	2.0	25	100	0	100	36	4	8	52	1.50
32736805--32736852	19	2.5	19	86	6	62	50	0	25	25	1.50
32738192--32738285	45	2.1	45	82	7	111	25	22	14	37	1.93
32746453--32746625	46	3.7	46	78	7	206	22	20	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32746452--32746620	93	1.8	93	94	0	302	22	20	27	28	1.99
32753979--32754124	46	3.1	48	72	8	147	25	27	19	27	1.99
32759624--32759827	53	3.8	53	76	1	192	19	23	18	39	1.92
32763031--32763074	22	2.0	22	100	0	88	27	22	13	36	1.92
32776369--32776426	28	2.0	29	86	3	82	17	41	22	18	1.90
32777376--32777638	47	5.6	48	81	6	258	22	29	19	28	1.98
32777376--32777597	93	2.4	95	84	8	303	22	29	19	27	1.98
32777376--32777641	94	2.8	93	80	14	298	22	29	19	27	1.98
32787214--32787274	18	3.4	18	83	0	86	39	24	8	27	1.84
32792241--32792292	26	2.0	26	96	0	95	34	9	23	32	1.87
32795136--32795175	21	1.9	21	94	0	71	60	25	2	12	1.45
32809231--32809271	22	1.9	21	85	5	55	56	0	0	43	0.99
32812973--32813099	7	18.0	7	76	10	80	37	39	0	22	1.60
32813088--32813141	21	2.5	23	74	14	62	46	25	1	25	1.63
32813014--32813151	21	6.6	21	68	12	52	42	33	1	23	1.63
32813605--32813632	12	2.3	12	100	0	56	46	32	14	7	1.71
32820618--32820698	29	2.8	29	83	5	94	27	11	30	30	1.91
32820631--32820699	28	2.4	29	85	2	95	27	10	30	31	1.90
32826081--32826169	44	2.0	44	100	0	178	22	25	6	44	1.77
32835325--32835456	48	2.7	47	82	6	149	25	31	18	24	1.97
32842684--32842808	48	2.7	46	80	7	139	24	30	16	28	1.97
32842730--32842902	46	3.8	44	75	11	154	23	28	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32842634--32842900	93	2.8	92	81	7	254	24	28	18	28	1.98
32854786--32854813	14	2.0	14	100	0	56	28	21	0	50	1.49
32857747--32857927	27	6.7	27	85	0	218	38	19	19	21	1.93
32857747--32857944	81	2.4	81	86	1	272	38	19	20	21	1.93
32858276--32858334	18	3.3	18	80	0	73	22	16	18	42	1.89
32866034--32866116	29	2.9	29	87	0	103	27	16	28	26	1.97
32883979--32884092	43	2.7	42	80	5	122	26	17	25	30	1.97
32899423--32899873	93	4.8	93	97	0	821	22	19	28	29	1.98
32906294--32906333	21	1.9	21	85	10	55	32	27	17	22	1.96
32917848--32917899	27	2.0	26	84	3	68	17	26	21	34	1.95
32920774--32920846	33	2.2	33	95	0	128	26	28	20	24	1.99
32921121--32921172	25	2.1	25	92	3	88	26	19	21	32	1.97
32921206--32921270	32	2.0	32	82	5	78	35	15	12	36	1.85
32921228--32921280	11	5.0	11	86	6	74	28	20	13	37	1.90
32921220--32921268	21	2.3	21	93	6	82	34	18	10	36	1.85
32921393--32921507	27	4.3	27	80	6	117	24	22	18	34	1.96
32921393--32921508	54	2.1	55	87	4	173	24	23	18	34	1.96
32921511--32921632	27	4.5	27	88	2	165	43	11	20	24	1.85
32925840--32925937	44	2.3	42	82	8	117	24	20	24	30	1.98
32928762--32928881	39	3.1	39	78	2	134	40	22	4	32	1.73
32930102--32930152	21	2.3	22	80	6	59	49	13	9	27	1.74
32930805--32930948	26	5.5	26	86	3	182	31	23	7	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32936261--32936541	81	3.5	81	85	2	368	30	10	20	37	1.87
32936247--32936541	27	11.0	27	80	2	324	30	10	21	36	1.88
32938807--32938867	30	2.0	30	90	0	95	42	6	22	27	1.78
32939680--32939919	51	4.8	51	90	2	315	26	20	24	29	1.99
32939678--32939922	101	2.4	99	84	2	319	26	20	24	29	1.99
32943451--32943800	27	13.0	27	83	4	397	32	12	18	36	1.88
32943504--32943818	134	2.3	135	85	3	420	32	11	18	37	1.86
32948093--32948186	27	3.5	27	83	0	116	28	11	18	41	1.85
32948093--32948197	54	1.9	54	86	0	147	27	14	18	40	1.89
32948506--32948557	6	8.8	6	79	12	63	19	19	13	48	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333