genome.fa.s3.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  138  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45099804--45100173	27	13.9	27	82	2	390	20	16	20	42	1.89
45099804--45100173	53	6.9	54	80	4	385	20	16	20	42	1.89
45099802--45100173	80	4.7	80	81	6	405	20	16	20	42	1.90
45101738--45101815	29	2.7	28	84	11	104	25	14	30	29	1.94
45101768--45102095	174	1.9	174	96	0	602	29	14	24	30	1.95
45109872--45109949	29	2.7	28	84	11	104	25	14	30	29	1.94
45109902--45110229	174	1.9	174	96	0	602	29	14	24	30	1.95
45116789--45116855	24	2.8	24	86	2	98	43	19	20	16	1.88
45116892--45116943	27	1.9	27	92	0	86	42	15	23	19	1.89
45116893--45116949	27	2.1	27	87	3	80	43	14	21	21	1.87
45116893--45116959	27	2.5	26	81	11	73	41	14	22	20	1.89
45122043--45122482	145	3.0	145	95	0	774	32	23	13	30	1.93
45122446--45122517	29	2.5	30	82	13	96	29	27	13	29	1.95
45130304--45130598	145	2.0	145	98	0	563	32	23	13	30	1.93
45130555--45130633	29	2.7	30	82	13	110	30	30	13	25	1.94
45144122--45144212	40	2.3	39	83	7	103	27	15	26	30	1.96
45147591--45147684	37	2.6	37	80	8	102	13	9	32	43	1.77
45155288--45155366	42	1.9	39	85	7	104	37	13	12	35	1.83
45161234--45161273	22	1.9	22	85	10	57	22	5	22	50	1.68
45177969--45177993	10	2.5	10	100	0	50	60	28	0	12	1.32
45179781--45179968	40	4.7	40	91	3	308	24	27	23	24	2.00
45189095--45189322	40	5.7	40	91	3	370	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45191286--45191343	24	2.4	24	85	0	80	37	18	24	18	1.94
45194655--45194838	40	4.6	41	82	12	208	26	22	27	24	2.00
45194707--45194871	79	2.1	79	82	8	194	27	21	27	24	1.99
45204268--45204378	43	2.6	43	85	2	125	36	23	15	25	1.94
45214711--45214788	41	1.9	41	97	0	147	41	15	19	24	1.90
45216614--45216639	12	2.2	12	100	0	52	26	23	0	50	1.50
45217928--45217961	15	2.3	15	89	0	50	2	38	8	50	1.49
45220792--45221054	40	6.7	40	88	6	308	24	21	27	25	1.99
45228845--45229015	39	4.3	39	92	2	254	24	22	28	25	2.00
45228792--45229015	40	5.7	40	86	7	264	25	22	27	25	2.00
45228792--45229015	79	2.8	79	84	9	260	25	22	27	25	2.00
45228845--45229048	79	2.6	79	84	6	220	25	21	27	24	1.99
45231639--45231666	12	2.3	12	100	0	56	50	0	14	35	1.43
45233413--45233438	12	2.2	12	100	0	52	30	15	15	38	1.88
45234065--45234360	151	2.0	151	94	0	520	36	7	22	32	1.83
45235257--45235380	62	2.1	57	83	10	151	52	4	4	39	1.39
45235793--45235832	19	2.1	19	86	9	55	32	2	5	60	1.32
45237912--45237959	14	3.6	14	75	25	50	47	2	8	41	1.45
45241089--45241263	46	3.8	45	75	10	174	22	21	27	28	1.99
45241086--45241258	93	1.9	93	90	0	274	22	22	27	27	1.99
45244389--45244714	48	6.8	48	84	4	374	27	17	27	27	1.97
45244392--45244714	144	2.2	145	84	5	415	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45244389--45244714	96	3.4	96	85	1	422	27	17	27	27	1.97
45260485--45260745	47	5.5	47	93	1	432	32	8	30	29	1.87
45266275--45266315	18	2.3	18	86	0	55	48	2	0	48	1.14
45271137--45271274	50	2.7	51	80	3	145	31	22	21	25	1.98
45273648--45273780	42	3.1	42	81	3	142	32	27	15	25	1.95
45298791--45298816	13	2.0	13	100	0	52	46	7	7	38	1.61
45301469--45301602	71	1.9	70	82	1	169	33	19	24	22	1.97
45301410--45301768	141	2.5	144	80	3	386	35	18	22	23	1.96
45301410--45301767	72	5.0	71	76	5	310	35	18	22	23	1.96
45310268--45310492	40	5.7	40	82	8	255	24	21	27	25	1.99
45311874--45311904	16	1.9	16	93	0	53	35	12	9	41	1.76
45317177--45317245	30	2.3	30	89	0	102	17	34	27	20	1.95
45318090--45318279	21	9.0	21	80	1	202	40	17	26	15	1.89
45318090--45318268	42	4.3	42	87	0	250	40	17	25	15	1.89
45330668--45330888	40	5.6	40	90	2	322	22	27	23	27	1.99
45340505--45340625	50	2.4	52	87	2	174	37	14	14	33	1.87
45340649--45340729	39	2.1	39	90	0	126	46	17	8	27	1.77
45343016--45343057	21	2.0	21	85	0	57	21	16	42	19	1.89
45356027--45356076	25	2.0	25	100	0	100	32	20	4	44	1.70
45360547--45360576	11	2.7	11	94	0	51	26	16	3	53	1.59
45364269--45364340	21	3.5	21	77	7	67	40	16	23	19	1.91
45365438--45365479	21	2.0	21	85	0	57	45	14	9	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45369521--45369545	11	2.3	11	100	0	50	8	12	8	72	1.29
45374555--45374603	19	2.5	19	76	6	53	46	22	20	10	1.80
45376177--45376222	23	2.0	23	95	0	83	47	10	4	36	1.58
45376189--45376347	81	2.0	81	98	0	309	39	18	9	32	1.83
45380484--45380561	31	2.6	30	79	4	93	29	12	8	48	1.72
45381354--45381388	16	2.2	16	94	0	61	54	11	5	28	1.59
45381568--45381607	22	1.9	21	85	10	55	25	2	2	70	1.13
45381770--45381830	31	1.9	33	87	9	92	36	14	22	26	1.93
45382217--45382295	31	2.6	31	80	9	83	46	15	11	26	1.79
45381574--45382388	440	1.8	435	78	8	894	37	10	13	38	1.78
45389945--45389975	7	4.4	7	91	0	53	0	22	0	77	0.77
45393786--45393829	22	2.0	21	91	4	70	40	18	9	31	1.81
45398826--45398887	21	3.0	21	66	17	56	17	17	37	27	1.93
45400293--45400337	21	2.1	21	100	0	90	62	0	15	22	1.33
45405670--45405694	13	1.9	13	100	0	50	48	0	20	32	1.50
45406171--45406307	48	2.9	48	85	4	186	29	19	24	27	1.99
45409878--45410056	39	4.5	39	90	1	259	29	27	22	20	1.98
45414444--45414665	40	5.6	40	88	1	279	24	22	27	26	2.00
45422215--45422432	40	5.5	40	87	2	289	22	23	28	25	1.99
45426166--45426296	57	2.3	57	80	7	133	29	16	24	30	1.96
45427121--45427166	21	2.2	21	88	0	65	39	2	19	39	1.64
45430822--45431106	29	9.8	29	82	6	312	25	16	21	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45430822--45431037	88	2.5	87	86	6	303	25	17	21	34	1.95
45444845--45445021	38	4.6	38	76	15	161	24	27	21	25	1.99
45452718--45452902	79	2.3	82	83	9	231	25	27	22	24	2.00
45452718--45452902	40	4.7	40	78	12	202	25	27	22	24	2.00
45461725--45461796	26	2.9	25	82	11	78	31	15	9	43	1.79
45463156--45463301	48	3.0	48	86	4	204	28	15	24	31	1.96
45466865--45467000	49	2.7	49	79	6	157	28	25	21	25	1.99
45473215--45473371	43	3.7	42	77	10	140	24	17	24	33	1.97
45474322--45474373	22	2.4	22	96	0	95	17	32	38	11	1.85
45475939--45475989	22	2.3	22	89	0	84	41	9	13	35	1.78
45478334--45478424	25	3.7	25	91	1	139	27	26	21	24	1.99
45478334--45478440	25	4.4	24	88	3	99	29	23	21	25	1.99
45480001--45480174	46	3.8	45	75	17	151	28	18	29	23	1.98
45480100--45480215	46	2.5	46	84	6	146	29	18	28	24	1.98
45480006--45480271	94	2.8	94	78	9	215	29	17	28	24	1.97
45480008--45480271	140	1.9	140	81	8	322	29	17	28	24	1.97
45480861--45480955	47	2.0	47	85	0	127	20	28	33	17	1.95
45483973--45484036	30	2.2	30	94	2	112	34	21	17	26	1.95
45494098--45494165	30	2.3	29	94	2	118	33	23	17	25	1.96
45498709--45498867	86	1.8	86	84	7	216	25	20	26	27	1.99
45498712--45498868	43	3.7	41	73	15	140	25	20	26	28	1.99
45533942--45534008	32	2.1	32	88	0	98	28	5	20	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45538855--45538988	54	2.5	54	93	0	232	27	16	24	31	1.96
45539158--45539196	19	2.1	19	100	0	78	38	5	15	41	1.69
45540994--45541283	27	10.7	27	81	1	294	38	20	8	32	1.83
45541319--45541780	27	17.2	27	91	1	660	34	19	22	23	1.97
45542235--45542299	22	3.0	21	77	6	67	20	21	23	35	1.96
45542458--45542559	27	3.8	27	87	5	125	18	22	21	37	1.94
45542719--45542815	6	15.8	6	74	16	83	19	17	15	47	1.83
45542713--45542831	31	3.9	31	83	3	143	19	16	15	48	1.81
45548465--45548515	17	3.0	17	100	0	102	29	17	29	23	1.97
45550901--45550925	13	1.9	13	100	0	50	8	8	40	44	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333