genome.fa.s3.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  149  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48829072--48829183	43	2.6	43	91	0	188	28	31	27	12	1.93
48829176--48829376	38	5.3	38	80	3	224	30	23	21	24	1.99
48835038--48835069	12	2.7	12	95	0	55	84	15	0	0	0.63
48835038--48835073	13	2.8	13	91	4	56	80	19	0	0	0.71
48837608--48837848	131	1.8	131	79	3	279	29	18	17	35	1.94
48837661--48837990	129	2.5	129	77	3	315	25	19	16	37	1.93
48849499--48850194	44	15.8	44	84	2	851	29	14	28	27	1.95
48851780--48851845	28	2.4	25	72	20	60	22	22	9	45	1.80
48853014--48853392	131	2.9	131	78	2	339	29	19	17	33	1.95
48855210--48855301	27	3.4	27	93	0	157	35	19	20	23	1.95
48855437--48855487	27	1.9	26	84	11	68	21	23	19	35	1.96
48855705--48855776	33	2.1	34	84	5	101	26	23	26	23	2.00
48858193--48858541	68	5.3	65	68	18	170	25	28	16	29	1.97
48858184--48858580	198	2.0	198	97	0	749	25	28	17	28	1.97
48861130--48861160	14	2.2	14	94	0	53	45	12	22	19	1.84
48863820--48863845	7	3.7	7	100	0	52	42	46	11	0	1.40
48867431--48867568	42	3.2	43	81	5	145	28	17	22	31	1.96
48867416--48867587	43	4.0	43	75	10	154	27	17	23	31	1.97
48867750--48867793	21	2.0	22	86	4	63	40	0	27	31	1.56
48875819--48875869	27	1.9	27	84	4	68	37	21	19	21	1.95
48875894--48876039	27	5.4	27	88	1	213	25	19	19	36	1.95
48875888--48876028	53	2.6	53	90	2	219	24	19	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48882173--48882223	27	1.9	27	84	4	68	37	21	19	21	1.95
48882226--48882396	27	6.3	27	84	2	173	26	18	18	36	1.94
48882225--48882396	54	3.2	54	80	0	191	26	18	18	36	1.94
48886191--48886354	40	4.1	40	85	5	217	23	21	28	27	1.99
48886582--48886623	22	1.9	22	85	9	59	33	9	14	42	1.78
48891283--48891460	40	4.5	40	84	6	204	25	28	23	23	1.99
48899334--48899551	40	5.5	40	89	4	293	25	28	23	22	1.99
48906277--48906326	13	3.8	13	91	0	73	16	46	18	20	1.85
48908762--48908837	35	2.2	36	90	7	129	28	19	14	36	1.91
48917333--48917548	38	5.2	38	74	18	198	30	25	15	29	1.96
48917378--48917637	48	5.7	47	85	8	331	30	23	15	30	1.95
48917340--48917674	85	3.8	85	86	8	463	29	23	15	30	1.96
48919322--48919389	27	2.5	26	92	2	82	33	27	10	27	1.89
48919320--48919415	28	3.4	28	86	2	122	33	28	11	27	1.91
48930052--48930093	21	2.0	21	100	0	84	28	28	4	38	1.77
48939932--48939977	15	3.1	15	81	9	58	32	8	2	56	1.42
48940124--48940154	15	2.1	15	100	0	62	48	0	12	38	1.42
48940168--48940227	22	2.7	22	76	14	61	43	3	8	45	1.50
48945075--48945120	17	2.6	17	78	21	51	52	2	0	45	1.13
48945078--48945125	18	2.7	17	77	6	51	50	2	0	47	1.12
48945518--48945561	7	6.6	7	84	10	65	70	0	2	27	0.99
48945520--48945560	12	3.2	12	89	6	55	68	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48946235--48946338	53	2.0	53	88	3	156	31	9	12	46	1.74
48946519--48946566	11	4.7	11	73	19	50	66	0	4	29	1.10
48946514--48946579	29	2.3	29	100	0	132	65	0	3	31	1.08
48947394--48947477	12	7.0	11	73	15	60	17	7	3	71	1.23
48947645--48947671	2	13.5	2	100	0	54	0	48	0	51	1.00
48949074--48949231	37	4.3	37	97	0	298	24	32	18	24	1.97
48949350--48949650	47	6.4	47	90	1	458	29	30	7	31	1.85
48949350--48949720	94	3.8	94	87	6	474	30	30	7	32	1.85
48949349--48949720	143	2.5	145	87	7	527	30	30	7	32	1.84
48949636--48949663	13	2.2	13	100	0	56	46	25	0	28	1.53
48949590--48949710	60	2.0	60	96	0	224	33	28	6	31	1.83
48949607--48949703	31	3.2	31	67	21	87	30	29	8	30	1.86
48953780--48953918	37	3.8	37	92	0	206	27	29	17	25	1.97
48954036--48954392	47	7.6	47	94	1	608	29	29	7	33	1.86
48954086--48954164	25	3.3	25	64	10	74	32	27	5	34	1.79
48958452--48958590	37	3.8	37	92	0	206	27	29	17	25	1.97
48958757--48958834	25	3.2	25	64	10	72	32	28	5	34	1.79
48958708--48959063	47	7.6	47	94	2	608	29	29	8	33	1.86
48958708--48959063	143	2.5	141	93	2	608	29	29	8	33	1.86
48975585--48975685	46	2.2	46	96	3	188	42	3	16	36	1.67
48977614--48977661	24	2.0	25	87	4	71	41	8	10	39	1.69
48977594--48977852	138	1.9	134	80	4	304	45	5	9	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48978550--48978597	3	16.0	3	95	0	87	33	2	0	64	1.05
48982172--48982231	18	3.3	18	77	9	68	46	10	13	30	1.75
48985180--48985402	40	5.6	40	83	6	213	24	20	27	27	1.99
48985180--48985404	80	2.8	79	82	7	242	24	20	28	27	1.99
48985255--48985437	79	2.3	80	81	1	217	25	20	27	26	1.99
48985180--48985437	119	2.2	120	80	4	281	25	20	27	26	1.99
49002635--49002844	40	5.3	39	85	4	217	26	21	27	24	1.99
49002705--49002879	79	2.2	80	81	2	201	25	21	29	24	1.99
49011521--49011698	27	6.6	27	81	5	180	28	28	16	26	1.97
49011542--49011697	82	1.9	81	86	3	224	28	28	16	26	1.97
49013732--49013954	40	5.6	39	80	8	200	25	21	27	26	1.99
49016352--49016414	27	2.3	27	80	0	72	34	14	25	25	1.94
49016369--49016421	27	2.0	27	85	7	72	35	13	22	28	1.92
49016570--49016715	27	5.4	27	85	1	195	26	20	16	36	1.93
49020347--49020450	33	3.3	33	76	15	94	30	25	22	22	1.99
49020385--49020445	28	2.2	28	87	0	86	31	22	22	22	1.99
49020612--49020687	27	2.9	25	81	11	89	38	22	18	21	1.94
49020820--49021018	27	7.4	27	79	4	168	25	17	21	36	1.95
49020822--49021018	81	2.4	81	81	1	207	25	17	20	36	1.95
49020823--49021006	54	3.4	54	83	0	215	25	17	21	35	1.95
49024711--49024782	27	2.7	26	72	8	63	37	16	23	22	1.94
49024719--49024794	27	2.8	27	81	0	89	36	19	22	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49024939--49025287	27	13.0	27	80	0	358	24	19	20	35	1.96
49029022--49029094	27	2.7	26	79	8	74	35	21	23	19	1.96
49029262--49029471	27	7.8	27	82	2	260	23	21	19	35	1.96
49035304--49035438	45	2.9	47	78	11	134	26	20	18	34	1.96
49035364--49035467	23	4.4	23	79	16	99	26	20	20	32	1.97
49035364--49035467	45	2.2	49	81	10	128	26	20	20	32	1.97
49050823--49051003	40	4.6	40	90	2	249	25	24	24	24	2.00
49054827--49055232	47	8.6	47	90	2	623	32	8	29	29	1.87
49054827--49055232	96	4.3	96	90	3	612	32	8	29	29	1.87
49054827--49055232	143	2.9	143	95	0	708	32	8	29	29	1.87
49056648--49056952	165	1.8	165	81	2	380	27	16	25	30	1.96
49058160--49058299	66	2.1	66	89	3	212	37	9	18	35	1.83
49058209--49058255	21	2.2	20	82	10	58	34	12	14	38	1.85
49060391--49060562	40	4.3	40	87	2	204	26	28	20	24	1.99
49064232--49064294	31	2.0	31	100	0	126	49	15	6	28	1.69
49065373--49065409	20	1.9	18	89	10	56	54	8	2	35	1.44
49066978--49067003	5	5.2	5	100	0	52	0	19	0	80	0.71
49069959--49070016	30	1.9	30	82	0	71	50	12	10	27	1.72
49074040--49074151	27	4.2	26	85	7	143	36	22	24	16	1.94
49074040--49074151	54	2.1	54	88	3	163	36	22	24	16	1.94
49075579--49075655	24	3.2	24	90	0	109	20	40	3	35	1.71
49079097--49079157	31	2.0	31	100	0	122	27	19	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49085209--49085333	49	2.5	49	83	3	153	21	27	23	28	1.99
49085354--49085568	46	4.6	47	74	10	163	25	27	19	27	1.99
49085393--49085565	94	1.8	94	82	7	226	25	28	19	26	1.98
49095481--49095646	56	3.0	55	86	3	208	25	13	26	34	1.93
49097594--49097714	51	2.4	51	80	8	138	29	32	13	24	1.93
49099349--49099386	19	2.0	20	85	15	53	39	23	0	36	1.55
49099615--49099736	46	2.7	46	92	2	183	30	27	20	21	1.98
49099613--49099755	46	3.1	45	83	7	130	30	27	20	21	1.98
49100158--49100218	30	2.0	30	83	0	77	34	24	3	37	1.72
49106865--49106902	19	2.0	20	85	15	53	39	23	0	36	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333