genome.fa.s3.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  155  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50806122--50806159	20	2.0	20	89	5	60	31	18	2	47	1.62
50814519--50814590	25	2.9	25	77	4	65	34	25	16	23	1.95
50823237--50823473	107	2.2	106	82	9	272	44	1	4	49	1.31
50823344--50823475	58	2.3	57	86	5	185	45	0	3	50	1.22
50823642--50823677	16	2.2	16	90	0	54	27	22	0	50	1.50
50830342--50830514	93	1.9	93	85	2	240	29	30	19	20	1.97
50832369--50832450	26	3.2	26	94	0	146	36	25	6	31	1.81
50832842--50832973	45	2.9	45	85	2	167	26	16	12	43	1.84
50839404--50839457	25	2.2	25	89	0	81	50	7	11	31	1.66
50839463--50839522	29	2.0	30	80	3	68	63	3	8	25	1.38
50839441--50839543	31	3.6	29	68	20	65	57	4	5	32	1.44
50839522--50839572	15	3.3	15	73	15	50	54	7	1	35	1.40
50839633--50839762	24	5.4	25	75	20	109	57	3	5	33	1.37
50839633--50839916	23	11.7	25	71	21	137	56	4	4	34	1.40
50839741--50839775	16	2.2	16	90	10	54	68	0	0	31	0.90
50839729--50839840	11	10.1	11	66	9	57	58	5	1	33	1.31
50839953--50840078	23	5.4	23	74	18	93	62	5	3	28	1.33
50840151--50840194	18	2.3	18	84	11	52	54	2	4	38	1.33
50841003--50841045	21	2.1	20	83	12	52	9	9	13	67	1.42
50841829--50842147	87	3.6	88	82	8	375	34	20	16	28	1.94
50841829--50842147	173	1.8	175	85	6	459	34	20	16	28	1.94
50853730--50853933	25	8.1	25	70	18	131	56	4	6	31	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50853909--50853956	13	3.5	13	75	10	51	56	6	2	35	1.36
50854012--50854137	24	5.2	25	73	20	106	57	3	5	33	1.41
50854069--50854199	64	2.0	64	81	8	151	60	3	3	32	1.30
50854120--50854153	16	2.2	16	89	5	52	67	0	0	32	0.91
50854059--50854214	24	6.9	22	74	20	119	58	4	2	33	1.31
50854108--50854218	11	10.1	11	66	11	57	58	5	1	34	1.31
50854918--50854967	25	2.0	25	100	0	100	40	16	12	32	1.84
50855309--50855366	19	3.2	19	68	22	61	36	1	10	51	1.46
50855312--50855378	35	1.9	35	96	0	125	35	1	11	50	1.48
50857092--50857315	40	5.6	40	89	1	290	25	20	27	27	1.99
50865347--50865404	19	3.2	19	65	22	52	36	1	8	53	1.42
50865350--50865416	35	1.9	35	90	0	107	35	2	10	50	1.52
50867227--50867298	23	3.1	23	79	16	78	58	5	1	34	1.30
50867236--50867297	23	2.6	22	85	12	79	59	4	1	33	1.28
50867393--50867434	3	14.0	3	80	9	50	59	0	4	35	1.19
50870755--50870802	24	2.0	25	84	12	64	52	2	8	37	1.44
50875672--50875725	28	1.9	28	100	0	108	29	11	7	51	1.64
50875964--50876024	30	2.0	30	83	0	77	31	22	8	37	1.84
50886428--50886605	40	4.5	40	92	2	279	25	28	22	23	1.99
50890202--50890302	25	4.0	25	94	0	184	20	8	33	36	1.84
50890969--50891016	25	1.9	25	82	0	60	35	20	14	29	1.93
50891044--50891118	20	3.9	19	80	13	75	37	10	18	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50891168--50891303	26	5.3	26	86	4	190	28	19	22	29	1.98
50910908--50910952	23	1.9	24	82	13	58	26	4	20	48	1.68
50914399--50914545	43	3.4	43	77	9	156	28	15	23	32	1.95
50914399--50914561	86	1.9	85	83	3	211	28	15	23	32	1.95
50914398--50914567	43	4.0	42	77	6	146	27	14	24	33	1.94
50918437--50918500	31	2.1	31	100	0	128	32	21	9	35	1.86
50925990--50926207	40	5.5	40	92	1	341	24	22	26	27	2.00
50935073--50935257	79	2.3	80	80	9	209	24	22	28	25	1.99
50935073--50935257	40	4.7	40	81	6	207	24	22	28	25	1.99
50935126--50935290	79	2.1	78	81	8	183	26	20	27	25	1.99
50943018--50943202	79	2.3	81	82	9	220	24	22	28	24	2.00
50943018--50943202	40	4.7	40	82	6	216	24	22	28	24	2.00
50943071--50943235	79	2.1	78	82	8	192	26	21	27	24	1.99
50952117--50952374	40	6.5	40	87	4	337	22	22	28	26	1.99
50953875--50954045	93	1.8	93	87	2	254	30	26	19	22	1.98
50953920--50954061	46	3.1	45	73	18	123	30	27	19	23	1.98
50954465--50954524	30	2.0	30	86	0	84	33	25	5	36	1.78
50958043--50958166	42	2.9	41	76	7	122	28	16	22	33	1.95
50958043--50958161	43	2.8	42	76	8	116	28	16	22	31	1.96
50961410--50961540	42	3.2	42	67	14	128	29	23	16	30	1.96
50966955--50967129	46	3.8	46	77	10	185	29	28	20	22	1.98
50969692--50969806	27	4.3	27	78	11	119	37	23	24	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50972990--50973207	40	5.5	40	88	2	280	25	27	23	23	2.00
50978654--50979002	40	8.7	40	89	2	495	24	27	22	24	2.00
50983096--50983325	40	5.8	40	92	1	336	24	28	21	25	1.99
50986105--50986334	40	5.8	40	92	1	336	24	28	21	25	1.99
50989112--50989343	40	5.8	40	90	1	306	28	27	20	24	1.99
50996668--50996914	40	6.5	40	80	11	252	26	28	21	22	1.99
50996800--50996857	31	1.9	31	96	3	109	31	29	18	20	1.97
50996760--50996899	69	2.0	71	88	5	214	29	29	20	21	1.98
51001160--51001279	56	2.1	56	100	0	240	44	9	24	22	1.82
51002406--51002630	40	5.7	40	82	5	260	24	21	27	26	1.99
51009090--51009209	56	2.1	56	98	0	231	45	9	23	22	1.81
51010337--51010561	40	5.7	40	86	5	296	24	22	28	25	2.00
51010337--51010584	119	2.1	119	82	7	290	25	21	27	25	2.00
51014789--51014956	70	2.4	70	86	0	237	41	29	9	19	1.83
51014789--51014934	35	4.2	35	91	1	222	41	30	9	18	1.82
51016084--51016139	19	2.9	19	89	0	85	25	28	30	16	1.96
51016704--51016956	134	1.9	133	97	0	479	19	10	18	51	1.74
51020018--51020926	373	2.5	372	98	1	1754	36	15	10	38	1.81
51021014--51021080	24	2.8	24	84	10	93	26	19	7	46	1.76
51021257--51021310	15	3.8	15	76	14	69	44	0	0	55	0.99
51021413--51021635	9	24.6	9	76	8	148	47	13	0	37	1.50
51021413--51021635	18	12.3	18	75	8	166	47	13	0	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021413--51021582	27	6.2	27	76	9	164	46	14	1	37	1.53
51021552--51021635	17	4.8	17	79	5	87	50	11	1	36	1.47
51033568--51033703	43	3.2	42	73	13	136	31	19	21	27	1.97
51033551--51033726	83	2.1	85	86	2	239	30	18	21	29	1.97
51036862--51037033	86	2.0	86	96	0	317	31	17	24	26	1.97
51040914--51041148	43	5.5	42	72	8	163	28	22	23	25	1.99
51040913--51041148	85	2.8	85	85	3	289	28	22	23	26	1.99
51047842--51047875	13	2.6	13	100	0	68	20	32	23	23	1.98
51049016--51049041	7	3.7	7	100	0	52	30	0	11	57	1.34
51054748--51054858	27	4.2	26	81	9	116	38	21	9	30	1.84
51054760--51054869	27	4.1	27	80	9	127	37	21	10	30	1.87
51054881--51054968	27	3.3	27	88	0	140	31	21	7	38	1.82
51054894--51055006	27	4.2	27	81	4	102	32	22	8	36	1.85
51054883--51054995	54	2.1	54	84	0	145	32	20	7	38	1.82
51054991--51055376	27	14.3	27	86	1	515	34	20	19	25	1.96
51055746--51055804	22	2.7	22	83	0	73	20	23	22	33	1.97
51055962--51056069	27	4.0	26	84	5	135	18	21	22	37	1.94
51056189--51056268	6	13.0	6	72	15	65	18	16	17	47	1.83
51056189--51056274	31	2.8	31	92	0	145	18	18	16	46	1.84
51056189--51056292	31	3.4	31	89	0	136	21	18	13	47	1.82
51058397--51058507	27	4.2	26	82	9	134	38	20	9	31	1.84
51058409--51058518	27	4.1	27	82	9	136	37	20	10	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51058530--51058617	27	3.3	27	91	0	149	31	22	7	37	1.83
51058543--51058655	27	4.2	27	81	4	93	32	23	8	35	1.86
51058532--51058644	54	2.1	54	83	0	136	32	21	7	38	1.82
51058640--51059025	27	14.3	27	85	1	506	34	20	19	25	1.96
51059395--51059453	22	2.7	22	83	0	73	20	23	22	33	1.97
51059611--51059718	27	4.0	26	83	5	108	18	22	22	37	1.95
51059611--51059718	54	2.0	53	83	5	137	18	22	22	37	1.95
51059838--51059935	31	3.2	31	89	0	142	22	17	12	47	1.80
51059866--51059917	6	8.5	6	79	12	61	17	17	17	48	1.82
51062044--51062154	27	4.2	26	82	9	134	39	21	8	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333