genome.fa.s3.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  141  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46171818--46171949	50	2.6	52	91	5	218	27	22	21	28	1.99
46171818--46171949	25	5.2	26	87	3	182	27	22	21	28	1.99
46171999--46172085	20	4.3	20	92	2	140	31	18	10	40	1.84
46172795--46172856	27	2.3	27	80	5	72	25	24	14	35	1.93
46172885--46173074	27	7.0	27	77	7	141	31	8	18	41	1.81
46172972--46173114	27	5.3	26	72	14	103	28	11	22	37	1.90
46173106--46173248	27	5.3	27	86	0	189	40	9	23	26	1.84
46177021--46177102	36	2.3	36	82	0	92	26	12	29	31	1.92
46179309--46179359	21	2.4	21	86	0	66	31	19	13	35	1.91
46179329--46179365	10	3.7	10	92	7	58	32	18	10	37	1.86
46179396--46179444	25	2.0	25	83	0	62	32	14	16	36	1.89
46201656--46201713	28	2.1	28	100	0	116	39	13	13	32	1.85
46208535--46208867	47	7.1	47	90	0	513	27	30	9	32	1.89
46212279--46212461	40	4.6	40	79	6	185	24	26	22	26	2.00
46212773--46212846	29	2.6	29	89	8	107	28	31	14	25	1.95
46212828--46212930	43	2.4	43	100	0	206	26	35	15	22	1.94
46214942--46215133	47	4.1	47	88	0	276	27	31	9	31	1.89
46215249--46215581	47	7.1	47	89	0	495	28	29	9	33	1.88
46219152--46219184	17	1.9	17	88	11	50	33	12	27	27	1.92
46222401--46222503	44	2.3	45	90	6	156	25	20	32	22	1.98
46227172--46227250	37	2.1	37	86	4	106	26	29	17	26	1.98
46227369--46227815	47	9.5	47	94	0	705	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46231473--46231571	40	2.5	40	75	9	103	23	28	23	25	2.00
46231877--46231955	29	2.7	29	86	5	106	27	32	15	24	1.95
46231937--46232031	43	2.2	43	100	0	190	27	36	14	21	1.92
46232003--46232056	25	2.2	25	100	0	108	29	37	14	18	1.91
46231960--46232099	68	2.1	68	100	0	280	28	35	14	21	1.92
46233973--46234051	37	2.1	37	86	4	106	26	29	17	26	1.98
46234170--46234569	47	8.5	47	92	1	593	28	30	9	32	1.88
46247633--46247710	38	2.1	38	100	0	156	29	7	23	39	1.82
46259424--46259599	46	3.8	46	77	14	191	21	21	28	29	1.98
46259421--46259592	93	1.8	93	92	2	292	21	21	28	28	1.99
46263689--46263992	47	6.4	47	91	1	428	34	7	29	27	1.85
46272742--46273147	47	8.6	47	92	2	641	29	30	8	32	1.87
46272742--46273147	96	4.3	96	90	4	630	29	30	8	32	1.87
46272742--46273147	143	2.9	143	93	0	672	29	30	8	32	1.87
46275845--46276020	46	3.8	46	77	14	191	21	21	28	29	1.98
46275842--46276013	93	1.8	93	92	2	292	21	21	28	28	1.99
46280443--46280604	86	1.9	86	80	5	193	33	23	15	27	1.95
46280734--46281099	40	9.1	40	96	0	660	24	22	28	25	1.99
46285672--46285704	12	2.8	12	95	0	57	3	33	33	30	1.73
46287725--46288024	47	6.4	47	91	2	469	28	30	8	33	1.86
46287847--46287969	22	5.3	22	63	18	70	26	30	9	33	1.89
46291480--46291584	28	3.7	27	76	12	95	31	30	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46291618--46291899	40	7.1	40	95	1	478	27	27	20	24	1.99
46293562--46293814	47	5.4	47	90	0	389	28	30	7	32	1.86
46293684--46293759	22	3.3	22	66	16	64	26	30	10	32	1.90
46305951--46306069	47	2.5	47	95	0	211	30	26	18	24	1.98
46306542--46306601	30	2.0	30	90	0	93	30	25	8	36	1.85
46308136--46308197	27	2.3	27	83	5	72	24	22	17	35	1.95
46324985--46325105	40	3.0	40	96	0	224	23	21	28	25	1.99
46325079--46325128	23	2.2	23	100	0	100	26	22	26	26	2.00
46325039--46325168	63	2.1	63	94	2	226	24	21	27	26	1.99
46324999--46325207	103	2.0	103	91	1	339	24	22	26	25	2.00
46325102--46325239	40	3.5	40	84	0	186	24	22	27	25	2.00
46329261--46329633	47	7.6	47	76	16	344	33	8	29	28	1.86
46329261--46329638	96	3.8	94	77	12	407	33	8	29	28	1.87
46329421--46329453	15	2.2	15	100	0	66	33	12	27	27	1.92
46329374--46329500	62	2.0	62	100	0	254	32	9	29	29	1.88
46329325--46329547	109	2.0	110	94	1	394	33	8	29	28	1.88
46329278--46329589	158	2.0	157	95	1	563	32	8	29	28	1.88
46329505--46329583	25	3.3	25	62	16	67	35	5	27	31	1.79
46333176--46333305	38	3.4	38	86	2	145	23	20	24	32	1.98
46334889--46335065	40	4.4	40	83	6	218	26	27	22	23	2.00
46334889--46335065	80	2.2	80	86	6	245	26	27	22	23	2.00
46337155--46337224	27	2.6	26	95	2	95	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46337155--46337252	28	3.5	28	90	2	135	31	28	13	26	1.94
46337699--46337725	12	2.2	12	100	0	54	40	0	7	51	1.30
46339335--46339408	29	2.6	29	86	4	96	25	31	16	27	1.96
46347381--46347454	29	2.6	29	86	4	96	25	31	16	27	1.96
46356906--46356973	27	2.5	27	92	2	91	33	27	11	26	1.91
46356908--46357003	28	3.4	28	86	2	104	32	27	12	28	1.93
46357450--46357479	14	2.1	14	100	0	60	43	0	6	50	1.28
46366173--46366205	16	2.1	16	100	0	66	18	24	24	33	1.97
46367234--46367381	43	3.4	43	79	5	122	26	22	26	24	2.00
46367389--46367466	40	1.9	41	81	2	95	24	19	29	26	1.98
46375358--46375382	3	8.3	3	100	0	50	68	32	0	0	0.90
46376514--46376563	19	2.9	18	80	11	52	40	0	2	58	1.10
46378462--46378536	39	1.9	39	97	0	141	14	16	26	42	1.86
46380928--46381010	26	3.2	26	92	0	148	32	6	25	36	1.80
46382602--46382760	27	5.9	27	84	10	193	18	25	22	33	1.97
46382599--46382760	54	3.0	54	92	2	256	18	25	22	33	1.97
46382602--46382760	81	2.0	80	85	6	214	18	25	22	33	1.97
46391469--46391504	17	2.0	18	89	10	56	16	33	19	30	1.94
46393370--46393587	40	5.5	40	88	2	289	24	28	23	22	2.00
46402929--46402987	29	2.0	29	100	0	118	37	13	16	32	1.88
46404816--46404912	31	3.2	29	80	5	95	47	7	3	42	1.46
46418982--46419657	47	14.4	47	92	0	1075	31	8	30	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46426155--46426444	48	5.9	49	74	6	241	29	16	26	27	1.97
46426156--46426437	98	2.9	96	81	3	325	29	16	26	27	1.97
46427636--46427674	21	1.9	21	89	5	62	10	41	30	17	1.83
46441136--46441214	26	3.0	27	77	9	99	50	1	7	40	1.39
46442319--46442766	54	8.3	53	73	10	282	37	13	20	29	1.90
46442353--46442799	108	4.1	108	78	5	357	37	13	20	28	1.90
46447097--46447202	40	2.7	41	80	5	137	27	29	20	22	1.99
46453074--46453237	40	4.1	40	84	3	222	26	28	21	23	1.99
46455533--46455670	42	3.2	42	79	9	143	39	24	13	23	1.90
46460972--46461147	46	3.8	46	78	10	196	19	21	29	29	1.98
46460968--46461140	93	1.9	93	92	0	292	20	21	30	28	1.98
46464088--46464167	15	5.4	15	75	7	74	11	18	12	57	1.64
46466556--46466731	46	3.8	46	73	11	162	20	19	28	31	1.97
46466552--46466722	93	1.8	93	88	2	263	21	19	29	29	1.98
46474686--46474854	43	4.0	41	77	12	146	33	24	16	24	1.96
46474750--46474849	44	2.3	44	83	8	125	33	27	16	24	1.95
46477470--46477533	30	2.2	30	88	2	94	25	1	12	60	1.40
46478495--46478562	34	2.0	34	100	0	136	26	17	8	47	1.77
46478495--46478547	17	3.1	17	68	10	54	26	15	9	49	1.74
46478496--46478574	34	2.3	34	93	0	131	26	16	6	50	1.69
46487201--46487278	29	2.7	29	86	2	104	51	10	2	35	1.50
46487213--46487284	28	2.6	27	86	6	90	50	11	4	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46510375--46510507	46	2.9	47	85	5	164	32	26	20	21	1.97
46510375--46510552	47	3.8	47	81	5	191	32	27	19	21	1.97
46517781--46517948	40	4.2	40	82	4	106	24	27	24	23	2.00
46517804--46517948	40	3.6	40	85	4	184	22	26	25	25	2.00
46524013--46524083	37	1.9	37	82	0	88	38	4	21	36	1.73
46524905--46524962	30	1.9	30	89	0	89	32	12	25	29	1.92
46525302--46525562	47	5.6	47	78	10	241	26	20	31	21	1.98
46526938--46527216	95	2.9	95	88	0	398	26	18	20	35	1.95
46528787--46528832	15	2.9	17	78	12	53	47	2	19	30	1.61
46537348--46537451	27	4.0	27	82	5	133	43	23	16	17	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333