Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  325  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105521410--105521440
16
1.9
16
93
0
53
35
6
9
48
1.62
105532709--105532828
48
2.5
48
82
2
145
27
21
15
35
1.93
105536157--105536187
15
2.1
15
100
0
62
38
0
0
61
0.96
105537801--105537836
8
4.5
8
96
0
63
13
33
0
52
1.41
105546269--105546295
6
4.5
6
100
0
54
29
33
18
18
1.95
105550538--105550606
32
2.3
28
77
18
68
40
0
17
42
1.49
105551416--105551503
30
2.9
30
77
9
90
43
6
10
39
1.65
105555419--105555553
40
3.4
40
94
2
245
20
22
27
29
1.98
105569589--105570158
203
2.7
211
83
5
753
41
22
11
24
1.87
105571685--105571715
12
2.6
12
100
0
62
25
9
25
38
1.86
105571769--105571833
31
2.1
31
94
0
112
38
6
15
40
1.72
105576780--105576868
37
2.3
38
84
11
117
53
5
1
39
1.32
105580251--105580315
32
2.0
32
96
0
121
18
21
18
41
1.90
105580257--105580311
16
3.4
16
69
18
51
18
23
18
40
1.91
105579821--105580284
96
4.8
96
97
0
883
17
22
14
45
1.85
105580285--105580376
46
2.0
46
97
0
175
22
23
15
38
1.92
105580203--105580361
78
2.0
80
86
7
225
19
22
16
41
1.90
105582423--105582472
21
2.4
22
70
19
52
0
34
0
66
0.92
105582430--105582463
17
2.0
17
94
0
59
0
26
0
73
0.83
105582495--105582532
15
2.4
16
86
8
60
5
15
0
78
0.91
105593492--105593586
42
2.3
42
91
5
151
42
6
10
41
1.65
105595044--105595102
27
2.1
28
84
9
77
62
5
3
28
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105601886--105602932
215
4.9
217
88
4
1543
34
17
14
33
1.90
105601886--105602932
421
2.4
431
89
4
1573
34
17
14
33
1.90
105602387--105602932
206
2.6
208
89
5
807
33
17
14
34
1.90
105605219--105605250
3
10.7
3
100
0
64
65
0
0
34
0.93
105607336--105607387
24
2.2
23
96
3
95
21
26
11
40
1.87
105611974--105612023
22
2.4
21
78
12
59
60
4
6
30
1.39
105613235--105613268
13
2.5
14
85
4
52
35
5
8
50
1.58
105615415--105615463
22
2.2
22
81
0
62
24
4
4
67
1.26
105615844--105615892
12
3.8
12
82
12
62
63
6
2
28
1.30
105616707--105617452
373
2.0
372
99
0
1465
41
13
12
32
1.82
105617861--105617911
25
2.0
26
88
3
77
31
7
1
58
1.37
105617861--105617911
26
2.0
25
85
11
68
31
7
1
58
1.37
105625018--105625117
30
3.3
30
88
2
139
17
55
6
22
1.63
105625036--105625188
15
10.3
15
76
1
110
16
58
6
18
1.59
105625051--105625179
45
2.9
45
83
1
143
17
58
6
17
1.58
105628584--105628618
17
2.1
17
88
0
52
34
0
0
65
0.93
105628666--105628740
30
2.5
30
81
10
82
34
2
6
56
1.40
105628712--105628767
24
2.3
25
82
14
64
30
3
8
57
1.47
105628824--105628860
19
1.9
19
88
0
56
29
13
2
54
1.53
105628929--105628968
20
2.1
18
86
9
53
35
0
5
60
1.19
105631452--105631493
20
2.1
20
86
0
57
61
2
0
35
1.09
105640340--105640365
13
2.0
13
100
0
52
61
0
7
30
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105643882--105643931
15
3.0
18
75
19
54
30
0
0
70
0.88
105644267--105644341
30
2.5
29
82
18
91
69
1
2
26
1.10
105646503--105646656
78
2.0
78
100
0
308
31
20
11
37
1.87
105657510--105657595
24
3.6
23
69
22
61
47
1
15
36
1.53
105659704--105660072
44
8.6
43
73
9
236
27
22
19
30
1.98
105659653--105660119
214
2.2
213
88
3
677
26
22
20
30
1.98
105659741--105660115
44
8.6
44
72
13
235
26
22
21
29
1.99
105684280--105684365
24
3.6
23
69
22
61
47
1
15
36
1.53
105687345--105687397
21
2.4
21
76
14
54
45
0
0
54
0.99
105690955--105691008
16
3.5
15
79
18
58
31
1
0
66
1.02
105692900--105693101
55
3.8
53
78
8
180
38
16
23
21
1.93
105695715--105695740
12
2.2
12
100
0
52
57
0
0
42
0.98
105695715--105695755
20
2.0
20
90
0
64
53
2
2
41
1.27
105695834--105695872
18
2.2
18
85
0
51
66
2
5
25
1.25
105703199--105703273
19
3.8
20
84
7
100
30
5
0
64
1.16
105703201--105703292
39
2.3
39
87
7
123
27
6
0
66
1.16
105703269--105703329
28
2.2
28
82
5
70
26
4
1
67
1.20
105704246--105704298
22
2.4
22
81
12
63
30
0
0
69
0.88
105717113--105717146
16
2.1
16
89
10
52
50
0
47
2
1.16
105728716--105729018
125
2.4
125
92
0
489
38
19
15
25
1.91
105729828--105729889
24
2.8
22
75
7
63
58
1
12
27
1.44
105730224--105730262
17
2.3
17
90
0
60
23
0
48
28
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105734363--105734403
21
1.9
22
90
5
66
56
0
4
39
1.21
105734407--105734452
20
2.4
19
89
10
67
63
2
0
34
1.07
105734548--105734602
25
2.2
25
83
6
67
65
0
1
32
1.03
105746630--105746673
20
2.2
20
88
4
63
36
2
9
52
1.46
105750548--105750591
22
2.0
22
86
0
61
52
0
0
47
1.00
105750683--105750739
15
3.5
15
71
17
51
49
0
1
49
1.11
105750685--105750721
19
1.9
19
88
0
56
48
0
0
51
1.00
105761449--105762116
23
29.1
23
78
7
608
37
24
5
32
1.78
105762003--105762059
22
2.5
23
77
2
62
47
22
0
29
1.52
105766847--105766886
19
2.2
17
86
8
53
22
5
0
72
1.04
105766976--105767041
7
9.0
7
82
9
78
42
0
0
57
0.98
105766975--105767071
38
2.5
38
86
8
126
39
0
2
58
1.10
105767857--105767894
15
2.6
15
80
19
53
47
31
0
21
1.51
105767850--105767899
22
2.3
22
80
13
59
48
28
0
24
1.52
105768036--105768168
7
19.0
7
72
11
51
43
35
0
20
1.57
105768059--105768105
14
3.4
14
87
0
67
53
27
0
19
1.45
105768036--105768083
22
2.2
22
85
10
64
43
31
2
22
1.65
105768174--105768209
15
2.5
15
95
4
65
47
27
0
25
1.52
105770926--105770984
26
2.3
25
82
8
66
50
6
13
28
1.67
105770943--105770994
26
2.0
26
96
0
95
48
7
17
26
1.74
105773092--105773199
54
2.0
54
85
3
146
43
5
19
31
1.74
105776689--105776713
9
2.8
9
100
0
50
24
44
0
32
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105776775--105776815
21
2.0
21
90
0
64
19
29
21
29
1.98
105787289--105787328
3
13.3
3
89
0
62
65
5
0
30
1.14
105789988--105790059
27
2.7
27
82
4
83
23
25
25
26
2.00
105793673--105793770
33
3.0
32
76
5
106
27
11
42
18
1.84
105795782--105795845
22
2.9
22
77
13
60
62
4
0
32
1.16
105795819--105795850
16
2.1
16
94
5
57
56
6
0
37
1.25
105795908--105796349
112
3.9
114
93
3
716
52
15
0
31
1.49
105803887--105804080
37
5.0
37
86
11
264
25
21
15
37
1.93
105803997--105804363
46
7.6
46
86
7
437
29
22
14
34
1.93
105804040--105804357
52
6.3
52
86
7
417
28
22
13
34
1.93
105803997--105804349
196
1.8
196
92
0
598
28
22
14
34
1.93
105803997--105804363
98
3.7
97
84
9
492
29
22
14
34
1.93
105812484--105812524
21
2.0
21
85
9
57
58
4
7
29
1.46
105812810--105812850
7
6.0
7
82
5
57
41
0
0
58
0.98
105813343--105813372
15
2.0
15
93
0
51
36
0
6
56
1.26
105813473--105813518
15
3.4
14
77
22
53
28
0
0
71
0.86
105813489--105813540
18
2.7
20
79
11
63
25
1
1
71
1.07
105813489--105813549
19
3.2
19
75
13
63
26
3
1
68
1.14
105813487--105813550
20
3.3
20
72
12
62
26
3
1
68
1.13
105815882--105815923
21
2.0
21
90
0
66
35
11
11
40
1.79
105817569--105817612
22
2.0
22
100
0
88
40
18
13
27
1.88
105820998--105821022
10
2.5
10
100
0
50
8
20
8
64
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105825848--105825905
24
2.4
25
85
2
73
56
0
1
41
1.09
105825979--105826035
23
2.4
25
82
14
75
52
0
0
47
1.00
105826196--105826221
12
2.2
12
100
0
52
50
0
7
42
1.31
105827210--105827276
32
2.1
32
97
0
125
34
19
17
28
1.95
105827483--105827539
29
2.0
29
82
6
71
33
3
1
61
1.23
105827487--105827594
11
9.7
11
68
17
55
35
1
1
61
1.18
105827566--105827608
9
4.7
9
82
11
52
37
0
2
60
1.10
105827546--105827607
27
2.3
28
83
8
76
37
0
1
61
1.06
105829725--105830019
137
2.1
138
88
3
423
59
5
4
30
1.40
105833307--105833340
15
2.3
15
90
10
52
23
8
5
61
1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333