Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  124  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40015625--40015832
79
2.6
79
79
11
203
25
25
22
26
2.00
40018622--40018682
30
2.0
30
83
0
77
31
22
8
37
1.84
40020257--40020317
30
2.0
30
83
0
77
31
22
8
37
1.84
40024426--40024624
50
3.9
50
80
2
200
25
15
28
31
1.96
40024426--40024645
51
4.3
50
79
5
183
25
15
27
31
1.96
40026162--40026191
13
2.3
13
100
0
60
20
0
33
46
1.51
40030787--40030963
83
2.1
83
97
0
336
24
15
31
28
1.95
40033368--40033437
27
2.6
27
95
2
113
31
28
12
27
1.93
40033368--40033465
28
3.5
28
90
2
135
31
28
13
26
1.94
40035702--40035872
93
1.8
93
91
0
279
29
28
19
22
1.98
40035697--40035869
46
3.7
46
75
13
183
30
27
19
22
1.98
40040495--40040711
40
5.5
40
88
3
298
25
28
23
22
1.99
40044508--40044680
46
3.7
46
75
7
179
30
26
20
23
1.99
40044513--40044683
93
1.8
93
91
0
279
29
26
21
22
1.99
40051202--40051785
47
12.1
47
90
4
871
32
8
29
28
1.88
40051202--40051785
145
4.0
140
90
3
835
32
8
29
28
1.88
40051202--40051785
245
2.4
241
93
2
985
32
8
29
28
1.88
40051904--40051982
37
2.1
37
88
0
113
24
17
31
26
1.97
40056454--40056490
17
2.2
17
100
0
74
64
10
18
5
1.43
40064944--40065028
44
1.9
44
85
4
118
28
12
21
37
1.90
40066778--40066859
32
2.6
30
83
11
85
41
3
4
50
1.41
40086708--40086806
49
2.0
49
98
0
189
36
16
10
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40091798--40091850
20
2.5
22
81
6
65
26
20
16
35
1.94
40095170--40095251
30
2.8
29
76
10
94
21
25
13
39
1.90
40104466--40104505
20
2.0
21
85
5
55
42
0
20
37
1.52
40112458--40112502
20
2.2
20
84
4
54
44
13
0
42
1.43
40114556--40114600
20
2.2
20
96
0
81
15
28
28
26
1.96
40124661--40124704
22
2.0
22
95
0
79
25
36
4
34
1.76
40129133--40129269
51
2.9
49
76
12
135
31
29
16
22
1.96
40129193--40129276
43
2.0
43
90
0
132
27
32
20
20
1.97
40131490--40131531
16
2.5
17
84
11
59
21
16
0
61
1.34
40132550--40132580
4
8.0
4
92
7
55
77
0
22
0
0.77
40135290--40135360
36
2.0
36
88
0
106
47
25
14
12
1.79
40139707--40139962
40
6.4
40
90
2
349
25
28
23
22
1.99
40146245--40146296
18
2.9
18
72
11
61
28
17
11
42
1.84
40149786--40149822
18
2.1
18
100
0
74
51
10
10
27
1.70
40150889--40150930
21
2.0
21
85
0
57
2
21
14
61
1.43
40151639--40151869
48
4.9
48
78
7
249
27
20
23
28
1.99
40163462--40163510
19
2.8
17
76
11
53
34
0
2
63
1.06
40164233--40164266
7
4.9
7
96
0
59
8
14
2
73
1.19
40164233--40164274
21
2.0
21
86
9
59
9
16
2
71
1.23
40179711--40179748
20
1.9
20
89
10
60
39
2
7
50
1.46
40185620--40185652
15
2.3
15
89
5
50
27
6
3
63
1.32
40187570--40187807
87
2.7
87
87
3
329
37
18
14
29
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40193128--40193161
12
3.1
11
91
8
52
29
2
0
67
1.05
40193009--40193360
177
2.0
176
94
0
623
26
11
15
46
1.80
40201009--40201037
14
2.0
15
93
6
51
34
6
24
34
1.82
40204630--40204693
33
1.9
33
93
0
110
23
6
39
31
1.79
40207009--40207049
19
2.2
19
100
0
82
39
14
26
19
1.90
40213721--40213795
23
3.3
23
81
3
80
21
26
24
28
1.99
40219221--40219274
26
2.1
26
92
0
90
44
14
14
25
1.84
40219638--40219703
27
2.4
28
89
2
98
28
19
19
31
1.97
40220834--40220873
10
4.1
10
90
6
64
30
20
2
47
1.63
40222995--40223038
20
2.1
21
87
4
63
43
2
36
18
1.63
40231617--40231665
23
2.1
23
96
0
89
46
10
8
34
1.67
40235351--40235531
40
4.6
40
88
2
240
24
23
25
25
2.00
40238613--40238735
43
2.9
42
77
8
122
30
24
13
30
1.94
40245976--40246145
43
4.0
43
80
13
197
21
19
28
30
1.98
40251508--40251589
25
3.3
25
69
6
85
32
4
13
48
1.63
40251508--40251611
50
2.1
50
98
0
199
30
5
15
48
1.68
40251532--40251611
25
3.2
25
67
13
74
30
6
16
47
1.71
40258141--40258284
51
2.8
51
94
0
252
29
25
12
32
1.92
40258308--40258402
28
3.5
28
83
13
137
27
23
14
34
1.94
40259793--40259964
47
3.7
46
79
8
170
29
19
28
22
1.98
40259699--40259961
140
1.9
141
80
5
309
29
19
27
23
1.98
40265937--40266141
80
2.6
80
83
8
240
27
25
19
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40265970--40266148
40
4.5
39
89
4
225
27
25
18
27
1.98
40273962--40274185
40
5.7
40
88
5
280
26
26
21
25
1.99
40273962--40274185
79
2.8
80
84
7
296
26
26
21
25
1.99
40294193--40294233
21
1.9
21
85
5
55
9
4
4
80
1.00
40294689--40294732
22
2.0
22
95
0
79
34
4
36
25
1.76
40303623--40303679
16
3.6
16
77
13
64
77
1
17
3
1.00
40303629--40303679
21
2.5
20
84
9
66
76
1
17
3
1.03
40303748--40303772
12
2.1
12
100
0
50
76
0
16
8
1.02
40303748--40303829
30
2.7
31
81
5
105
64
1
21
12
1.33
40304968--40305015
14
3.4
14
85
0
60
43
6
31
18
1.75
40307747--40307843
30
3.2
31
75
5
101
29
27
13
28
1.94
40312596--40312640
17
2.6
18
82
10
58
13
22
35
28
1.92
40315716--40315961
49
5.0
49
83
3
303
28
28
18
23
1.98
40315722--40315961
100
2.4
99
87
2
347
29
27
19
23
1.98
40317849--40317888
20
2.0
20
100
0
80
30
10
30
30
1.90
40318294--40318332
6
6.3
6
91
5
60
79
2
0
17
0.84
40318294--40318342
12
3.7
13
83
8
55
79
2
0
18
0.83
40318285--40318347
12
4.8
13
70
24
51
74
1
0
23
0.90
40319412--40319458
25
1.9
25
87
12
71
2
23
2
72
1.06
40319408--40319494
31
2.8
33
76
20
82
3
22
1
72
1.07
40319440--40319464
13
1.9
13
100
0
50
8
20
0
72
1.10
40319409--40319494
19
4.5
18
72
17
59
3
23
1
72
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40328140--40328195
12
4.7
12
91
8
96
78
7
0
14
0.95
40328241--40328307
26
2.6
26
88
4
91
76
4
8
10
1.15
40329209--40329247
15
2.4
15
87
12
51
66
2
20
10
1.33
40333472--40333562
18
4.9
18
69
12
58
65
1
23
9
1.29
40334977--40335038
30
2.1
30
100
0
124
25
22
9
41
1.84
40337381--40337696
158
2.0
158
95
0
569
26
31
18
22
1.97
40337706--40337803
30
3.3
30
69
9
83
27
27
16
28
1.97
40340696--40340732
13
2.6
14
91
8
58
78
5
2
13
1.03
40340696--40340733
14
2.6
14
87
4
58
78
5
2
13
1.02
40340710--40340744
18
1.9
18
88
0
52
74
5
5
14
1.19
40343070--40343126
11
5.5
10
73
22
55
77
1
17
3
1.00
40343059--40343126
21
3.2
20
80
12
66
76
2
17
2
1.04
40343070--40343126
5
11.0
5
77
17
55
77
1
17
3
1.00
40343070--40343126
16
3.7
14
80
17
60
77
1
17
3
1.00
40343174--40343204
12
2.6
12
100
0
62
45
12
16
25
1.83
40343207--40343277
30
2.4
31
81
11
85
61
1
22
14
1.40
40346644--40346693
27
1.9
25
84
15
66
66
6
24
4
1.32
40346704--40346728
12
2.1
12
100
0
50
68
0
24
8
1.16
40351364--40351429
20
3.2
20
86
2
87
22
22
18
36
1.95
40352065--40352104
14
2.9
14
88
0
53
50
7
32
10
1.64
40353620--40353716
30
3.2
30
76
2
97
27
26
16
28
1.97
40357210--40357267
23
2.7
20
77
15
62
79
3
15
1
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40357202--40357267
34
2.0
32
82
11
80
78
4
15
1
0.98
40357327--40357370
18
2.4
18
80
0
52
68
2
13
15
1.31
40360500--40360533
13
2.7
12
90
9
50
11
26
0
61
1.30
40366071--40366105
18
1.9
18
88
11
54
22
20
0
57
1.41
40367001--40367064
13
4.6
13
77
12
65
15
7
3
73
1.19
40369832--40369897
20
3.2
20
86
2
87
22
22
18
36
1.95
40369830--40369920
10
9.0
10
70
11
51
20
24
16
38
1.93
40374942--40375004
21
3.0
21
88
2
90
30
3
33
33
1.74
40378995--40379083
26
3.6
25
76
14
87
70
5
10
13
1.31
40379001--40379065
22
2.8
23
81
11
62
75
4
10
9
1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333