Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  125  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40379023--40379065
22
1.9
22
90
4
68
76
6
13
2
1.08
40379060--40379086
14
1.9
14
100
0
54
70
7
7
14
1.32
40381335--40381388
23
2.2
25
78
15
60
62
3
22
11
1.43
40385675--40385727
26
2.0
26
85
7
70
66
7
11
15
1.44
40385729--40385756
14
2.0
14
100
0
56
71
7
7
14
1.29
40385704--40385750
24
2.0
24
86
0
67
76
6
10
6
1.15
40387995--40388048
23
2.2
25
78
15
60
62
3
22
11
1.43
40397630--40397676
20
2.3
20
85
0
67
21
12
36
29
1.91
40400537--40400586
11
4.6
11
83
14
59
8
10
4
78
1.09
40400476--40400554
28
2.8
27
79
12
79
8
15
5
70
1.29
40400536--40400585
21
2.4
21
80
6
57
10
10
4
76
1.15
40402096--40402142
20
2.3
20
85
0
67
21
12
36
29
1.91
40403228--40403325
30
3.3
30
72
4
81
27
25
16
30
1.96
40406700--40406747
15
3.3
15
73
5
53
43
25
0
31
1.55
40415168--40415221
24
2.2
25
78
15
60
11
22
3
62
1.43
40419408--40419454
20
2.3
20
85
0
67
29
36
12
21
1.91
40422066--40422171
48
2.2
47
85
9
135
59
1
24
14
1.45
40423841--40423887
20
2.3
20
85
0
67
29
36
12
21
1.91
40431965--40432019
22
2.5
22
74
11
58
76
1
14
7
1.08
40432038--40432069
9
3.6
9
100
0
64
87
0
12
0
0.54
40432948--40432982
18
1.9
18
88
11
54
57
0
20
22
1.41
40436772--40436800
14
2.1
14
100
0
58
72
6
6
13
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40440432--40440509
21
3.4
23
74
8
70
26
3
30
38
1.74
40440468--40440529
21
2.9
21
82
2
79
30
3
32
33
1.74
40444737--40444788
16
3.2
16
75
2
50
9
13
3
73
1.23
40447000--40447037
12
2.8
13
84
15
51
15
10
2
71
1.25
40447004--40447037
12
2.6
14
90
9
54
11
8
2
76
1.12
40447300--40447377
21
3.4
23
74
8
70
26
3
30
38
1.74
40447336--40447397
21
2.9
21
82
2
79
30
3
32
33
1.74
40463391--40463438
20
2.3
21
82
3
62
35
18
0
45
1.50
40464306--40464389
39
2.1
40
86
2
116
40
17
17
23
1.91
40464475--40464822
126
2.8
126
91
1
545
29
17
20
33
1.95
40464752--40464898
40
3.7
38
75
10
116
31
23
15
29
1.95
40465113--40465160
15
3.3
15
85
5
71
18
0
33
47
1.49
40465059--40465269
22
9.8
21
73
8
129
21
0
33
44
1.56
40465142--40465253
36
3.1
36
76
8
111
18
0
36
44
1.50
40465188--40465269
36
2.3
36
82
4
103
19
0
36
43
1.51
40465113--40465270
7
22.0
7
72
12
88
20
0
36
43
1.52
40473976--40474033
13
4.4
13
69
4
53
44
1
17
36
1.59
40478209--40478308
41
2.4
41
89
0
155
20
32
16
32
1.94
40480849--40481024
56
3.1
56
99
0
343
44
9
23
22
1.81
40482149--40482333
40
4.7
40
84
7
227
23
22
28
25
1.99
40482202--40482366
79
2.1
79
83
8
203
24
21
27
26
1.99
40488819--40488994
56
3.1
56
99
0
343
44
9
23
22
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40490164--40490329
78
2.2
75
84
10
203
24
19
28
27
1.99
40490117--40490298
39
4.7
40
82
10
209
22
21
28
26
1.99
40500519--40500578
25
2.3
26
94
5
113
26
15
30
28
1.96
40508024--40508175
28
5.5
27
77
10
139
26
14
29
29
1.95
40511089--40511208
48
2.5
48
90
1
188
30
16
31
21
1.96
40511084--40511354
47
5.8
47
76
8
133
30
17
29
22
1.97
40512264--40512319
28
2.0
28
89
3
85
12
23
42
21
1.86
40517447--40517618
46
3.7
46
82
7
190
20
29
20
29
1.98
40520952--40521043
35
2.6
35
94
0
157
35
26
7
30
1.84
40522491--40522516
7
3.7
7
100
0
52
0
15
15
69
1.20
40523290--40523423
64
2.1
64
95
0
241
38
11
4
46
1.60
40523471--40523541
24
3.0
24
83
8
99
28
18
8
45
1.78
40523715--40523785
29
2.4
29
95
0
124
43
1
0
54
1.08
40523721--40523769
16
3.2
16
68
26
52
42
2
0
55
1.11
40523897--40524280
9
43.4
9
82
4
433
48
11
1
38
1.51
40523897--40524253
44
8.3
44
87
6
491
48
11
1
38
1.51
40523897--40524280
35
10.9
36
85
3
442
48
11
1
38
1.51
40523897--40524280
53
7.2
54
83
4
388
48
11
1
38
1.51
40524818--40524937
58
2.1
58
100
0
240
23
19
22
35
1.96
40526208--40526232
12
2.1
12
100
0
50
32
8
28
32
1.86
40529548--40529576
14
2.1
14
93
6
51
34
0
6
58
1.25
40529991--40530065
21
3.6
21
82
7
98
30
18
49
1
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40530313--40530379
31
2.2
31
83
0
80
17
7
17
56
1.63
40531626--40531690
19
3.2
19
77
16
60
55
4
0
40
1.21
40531672--40531714
17
2.4
18
88
11
63
53
0
0
46
1.00
40532573--40532657
41
2.1
41
95
0
152
45
9
9
35
1.69
40533405--40533430
2
13.0
2
100
0
52
50
0
50
0
1.00
40537573--40537622
20
2.5
20
86
0
64
44
0
14
42
1.44
40544403--40544466
20
3.2
20
67
20
62
43
9
7
39
1.66
40544402--40544483
39
2.1
38
95
2
146
43
9
8
37
1.68
40545137--40545170
8
4.2
8
92
0
50
35
5
23
35
1.79
40551083--40551256
46
3.8
46
75
13
176
29
26
20
23
1.99
40555133--40555220
5
17.8
5
88
6
135
59
18
1
21
1.45
40558351--40558388
13
3.0
12
92
7
58
65
0
34
0
0.93
40558351--40558388
6
6.0
6
90
9
58
65
0
34
0
0.93
40558558--40558704
40
3.7
40
88
0
186
29
18
23
28
1.97
40558781--40558885
41
2.6
41
87
1
131
26
19
26
27
1.99
40558802--40558885
41
2.0
41
93
0
141
29
19
23
27
1.98
40559202--40559307
14
7.4
14
68
12
63
24
0
28
46
1.59
40559261--40559313
22
2.5
21
84
3
70
24
0
28
47
1.52
40559266--40559300
15
2.4
14
86
9
52
22
0
31
45
1.53
40559261--40559321
22
2.8
22
82
2
61
22
0
31
45
1.53
40564709--40564885
42
4.2
43
80
2
205
23
15
28
32
1.95
40564708--40564894
85
2.2
83
80
4
212
22
15
27
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40565813--40565869
24
2.4
24
75
13
64
42
5
14
38
1.68
40565818--40565863
24
1.9
24
86
8
67
41
6
17
34
1.75
40567517--40567557
22
1.9
22
85
5
57
36
4
2
56
1.34
40574986--40575025
17
2.3
18
86
4
55
37
10
12
40
1.77
40579154--40579182
14
2.1
14
100
0
58
20
10
34
34
1.87
40598186--40598269
6
14.2
6
97
2
161
33
0
16
50
1.46
40602179--40602210
15
2.1
15
100
0
64
40
25
6
28
1.79
40623436--40623478
18
2.4
18
81
14
61
46
4
9
39
1.57
40623916--40624013
27
3.5
28
88
5
128
25
13
28
32
1.93
40623944--40624027
27
3.0
27
87
5
96
29
11
25
33
1.91
40631810--40631929
56
2.1
56
96
0
222
45
9
22
22
1.80
40633374--40634068
47
14.6
47
92
3
979
33
9
29
28
1.88
40633374--40634068
192
3.6
188
88
5
979
33
9
29
28
1.88
40643073--40643122
18
2.8
17
79
14
57
66
0
0
34
0.92
40643441--40643466
13
2.0
13
100
0
52
53
0
7
38
1.30
40647569--40647608
17
2.4
17
95
0
71
30
12
22
35
1.91
40652502--40652651
67
2.2
66
81
8
169
32
17
29
21
1.96
40652526--40652709
67
2.8
64
77
8
194
29
17
30
22
1.96
40654373--40654399
10
2.7
10
100
0
54
40
0
0
59
0.98
40657035--40657099
32
2.3
27
72
25
69
32
6
4
56
1.44
40657042--40657107
32
2.1
32
100
0
132
28
6
6
59
1.46
40659847--40660000
67
2.3
66
81
7
168
31
16
29
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40662735--40662922
40
4.7
40
91
0
306
26
22
26
23
2.00
40662735--40662955
80
2.8
80
86
2
304
27
23
26
22
1.99
40670679--40670938
80
3.3
79
88
2
362
28
23
26
21
1.99
40670679--40670911
40
5.9
40
92
1
362
27
23
27
21
1.99
40670679--40670938
119
2.2
118
86
4
353
28
23
26
21
1.99
40670679--40670938
40
6.6
40
89
2
213
28
23
26
21
1.99
40673649--40673834
40
4.7
40
83
6
227
24
26
23
25
2.00
40673649--40673833
79
2.3
82
84
7
238
24
27
23
24
2.00
40673630--40673836
40
5.2
40
81
8
226
24
26
22
26
2.00
40682845--40682993
28
5.3
28
90
1
210
26
12
28
33
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333