genome.fa.s3.2.7.7.80.10.50.1000.284.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  284  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94052039--94052110	26	2.8	26	100	0	144	50	2	6	40	1.44
94052115--94052158	17	2.6	17	96	0	79	34	0	18	47	1.49
94054930--94055008	40	2.0	40	84	0	104	34	18	16	30	1.94
94054865--94055180	114	2.8	114	94	0	560	37	18	15	27	1.91
94055045--94055122	40	2.0	39	82	7	95	34	19	16	29	1.94
94055084--94055255	75	2.3	74	95	2	308	39	18	13	27	1.89
94054970--94055347	189	2.0	188	89	1	578	39	19	14	26	1.90
94055344--94055628	114	2.5	115	81	2	315	31	22	17	28	1.97
94056133--94056306	7	25.1	7	66	16	60	39	38	4	17	1.69
94056212--94056283	21	3.1	21	75	21	72	38	43	4	13	1.64
94056212--94056268	27	2.1	27	96	0	105	38	45	3	12	1.59
94056212--94056256	20	2.2	21	88	4	65	37	46	4	11	1.60
94056738--94056875	73	1.9	72	86	4	197	30	19	21	28	1.98
94056775--94057101	113	2.9	114	83	2	399	30	23	21	25	1.99
94057072--94057201	39	3.3	38	78	10	127	22	18	22	36	1.95
94058651--94058681	3	10.3	3	100	0	62	0	32	0	67	0.91
94061097--94061129	11	2.8	12	82	17	50	66	0	6	27	1.15
94061554--94061624	15	4.7	15	72	5	54	28	1	5	64	1.24
94062143--94062192	17	3.2	17	67	21	54	56	4	8	32	1.47
94062142--94062194	18	3.3	18	65	29	55	56	3	7	32	1.45
94062143--94062199	30	1.9	30	100	0	114	56	3	7	33	1.43
94064650--94064732	27	3.1	27	89	0	121	40	24	6	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94064659--94064756	27	3.6	27	88	0	124	41	22	7	28	1.80
94064659--94064811	27	5.7	27	82	3	121	39	22	9	28	1.85
94064830--94064945	27	4.3	27	87	0	151	31	20	6	41	1.77
94064806--94064945	54	2.6	54	82	0	181	32	20	6	41	1.77
94065450--94065514	25	2.6	25	90	0	94	15	20	16	47	1.82
94065450--94065627	6	28.8	6	70	17	107	18	17	14	48	1.81
94065469--94065551	37	2.2	37	89	0	130	18	20	15	45	1.85
94065512--94065569	25	2.3	25	96	0	107	20	20	12	46	1.82
94065450--94065613	62	2.6	62	89	0	247	18	18	14	48	1.81
94065503--94065579	25	2.7	29	71	23	72	20	16	12	49	1.79
94065531--94065618	37	2.4	37	82	0	113	20	17	12	50	1.78
94072704--94072730	6	4.5	6	100	0	54	33	48	18	0	1.49
94074988--94075018	7	4.4	7	100	0	62	16	45	0	38	1.47
94076705--94076734	10	3.0	10	90	0	51	46	0	0	53	1.00
94077483--94077536	7	7.4	7	84	13	65	70	3	0	25	1.04
94097062--94097597	44	11.7	44	70	11	220	33	15	19	31	1.93
94097148--94097429	95	2.9	95	81	4	314	35	15	18	30	1.92
94097292--94097393	51	2.0	51	86	0	141	35	14	17	32	1.91
94097338--94097599	136	1.9	136	80	0	308	31	16	21	30	1.95
94099305--94099354	20	2.6	19	87	9	66	30	0	0	70	0.88
94099314--94099355	16	2.8	15	89	7	59	28	0	0	71	0.86
94099452--94099508	29	2.0	29	96	0	105	22	7	1	68	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94100463--94100491	14	2.0	15	93	6	51	58	0	0	41	0.98
94100605--94100819	90	2.4	89	80	10	249	37	20	7	33	1.82
94100838--94100874	17	2.1	18	90	5	58	70	2	5	21	1.20
94100855--94100959	27	3.8	26	76	10	93	60	2	2	33	1.26
94100879--94100940	10	6.7	10	75	18	55	61	1	1	35	1.16
94100839--94100961	55	2.2	54	80	9	142	62	3	3	30	1.27
94100879--94100962	36	2.3	39	80	14	97	61	2	2	33	1.21
94101296--94101498	89	2.3	88	82	6	250	34	6	20	37	1.80
94102579--94102857	41	6.6	41	73	10	177	31	18	23	25	1.98
94102687--94102786	52	1.9	52	89	0	155	34	22	21	23	1.97
94103024--94103048	7	3.6	7	100	0	50	16	0	24	60	1.36
94104181--94104258	22	3.6	22	81	6	79	24	1	28	46	1.61
94104223--94104255	14	2.3	15	85	15	52	24	0	30	45	1.53
94104181--94104258	21	3.7	20	78	10	66	24	1	28	46	1.61
94109985--94110098	44	2.6	43	82	8	140	18	20	32	28	1.96
94109981--94110424	43	10.3	43	75	7	303	21	20	26	30	1.98
94110220--94110466	128	1.9	128	81	8	297	22	20	25	31	1.98
94110585--94110613	8	3.6	8	100	0	58	37	10	13	37	1.79
94112126--94112177	14	3.6	14	73	12	52	48	1	0	50	1.12
94112189--94112230	13	2.9	14	80	13	50	54	0	0	45	0.99
94112193--94112229	16	2.3	16	86	13	58	59	0	0	40	0.97
94112262--94112315	15	3.3	15	74	18	54	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94116053--94116093	21	2.0	21	90	0	64	34	21	24	19	1.97
94121341--94121373	2	16.5	2	100	0	66	0	48	0	51	1.00
94123929--94123962	18	1.9	17	88	5	50	35	20	0	44	1.52
94126898--94126924	11	2.5	11	100	0	54	74	0	0	25	0.83
94127079--94127123	23	2.0	23	86	8	65	71	0	2	26	0.98
94127081--94127113	14	2.4	14	100	0	66	72	0	0	27	0.85
94144844--94144895	23	2.3	22	75	21	54	9	23	1	65	1.32
94147274--94147299	6	4.3	6	100	0	52	84	0	0	15	0.62
94155883--94155927	23	2.0	23	86	8	65	71	0	2	26	0.98
94155885--94155917	14	2.4	14	100	0	66	72	0	0	27	0.85
94157149--94157203	28	1.9	29	82	10	69	14	18	54	12	1.71
94157415--94157445	16	1.9	16	93	0	53	64	6	0	29	1.18
94157711--94157735	7	3.6	7	100	0	50	88	12	0	0	0.53
94157736--94157895	82	2.0	82	88	5	243	34	9	16	39	1.81
94158961--94159023	22	2.9	21	82	17	83	58	1	0	39	1.07
94159015--94159076	25	2.5	26	86	5	83	61	1	1	35	1.16
94159202--94159256	25	2.2	25	83	0	65	34	0	1	63	1.05
94159978--94160222	136	1.8	136	84	0	337	35	15	13	35	1.87
94161988--94162066	24	3.2	24	80	8	88	40	20	16	22	1.91
94165042--94165149	26	4.2	26	91	0	180	35	24	8	32	1.85
94165674--94165720	21	2.3	20	88	3	67	38	14	0	46	1.45
94180245--94180342	49	2.0	48	98	2	187	39	6	2	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94180713--94180767	16	3.4	16	89	0	83	34	5	25	34	1.79
94181018--94181050	17	1.9	17	100	0	66	63	0	0	36	0.95
94181492--94181568	40	1.9	40	89	5	120	36	18	3	41	1.69
94183293--94183355	29	2.1	29	82	2	72	46	3	6	44	1.45
94190208--94190270	30	2.1	30	91	5	101	28	4	11	55	1.55
94192646--94192694	6	8.2	6	93	0	80	16	16	16	51	1.78
94193441--94193520	41	1.9	42	90	7	128	22	25	31	21	1.98
94195807--94195941	50	2.6	51	78	19	145	23	21	15	39	1.92
94195902--94196031	49	2.6	51	83	3	156	23	30	19	26	1.98
94195831--94196031	50	4.0	51	79	6	185	23	24	17	34	1.96
94197571--94197605	18	1.9	18	88	0	52	60	0	0	40	0.97
94208447--94208593	40	3.6	40	77	8	127	24	28	19	27	1.98
94208525--94208656	44	3.0	45	77	11	139	25	28	18	27	1.98
94208768--94208874	28	3.8	28	87	0	133	29	25	11	33	1.90
94212132--94212552	47	9.0	47	89	0	626	31	11	29	27	1.91
94212253--94212328	23	3.2	25	62	24	63	28	13	34	23	1.92
94212715--94212866	37	4.1	37	89	0	223	21	21	31	25	1.98
94214305--94214455	43	3.5	43	81	5	155	27	14	23	34	1.94
94217595--94217628	17	1.9	18	88	5	52	50	0	0	50	1.00
94218738--94218806	31	2.3	30	78	14	70	33	7	10	49	1.64
94222552--94222594	19	2.1	21	87	8	63	27	0	27	44	1.55
94222559--94222614	21	2.7	21	82	15	64	26	0	28	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94224897--94224930	17	2.1	17	88	5	52	35	0	0	64	0.94
94226044--94226075	4	8.0	4	100	0	64	25	50	0	25	1.50
94227620--94227664	22	2.0	23	82	8	56	20	20	2	57	1.51
94228609--94229283	340	2.0	331	92	2	1116	41	14	9	34	1.78
94231286--94231398	36	3.2	36	75	7	122	24	23	24	26	2.00
94231287--94231457	71	2.4	71	87	3	229	26	24	23	24	2.00
94231319--94231430	35	3.2	35	72	9	111	25	22	25	27	2.00
94235552--94236082	48	11.1	48	92	3	876	37	6	25	30	1.81
94235552--94236082	236	2.2	238	92	3	879	37	6	25	30	1.81
94236229--94236373	37	3.9	37	92	1	211	24	18	29	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333