genome.fa.s3.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  194  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63497680--63497714	5	7.0	5	93	0	52	40	25	0	34	1.56
63498370--63498410	19	2.2	19	90	0	64	7	12	4	75	1.16
63503416--63503492	40	1.9	40	100	0	154	37	15	14	32	1.88
63504176--63504335	27	5.9	27	88	1	205	42	18	14	24	1.88
63515027--63515106	36	2.2	36	95	0	142	32	3	26	37	1.74
63516414--63516621	40	5.2	40	89	3	267	24	19	27	28	1.99
63524786--63524993	40	5.2	40	89	3	267	24	19	27	28	1.99
63551914--63551945	9	3.8	9	84	16	50	56	37	0	6	1.25
63551914--63551945	16	2.0	16	100	0	64	56	37	0	6	1.25
63553422--63553555	29	4.7	28	81	9	155	26	15	32	25	1.95
63553422--63553555	57	2.4	56	85	7	164	26	15	32	25	1.95
63555192--63555376	40	4.7	40	93	1	282	25	27	23	23	2.00
63555192--63555414	40	5.6	39	84	8	256	25	28	23	23	2.00
63557866--63558017	40	3.8	41	89	3	211	24	21	28	25	1.99
63557866--63558037	80	2.2	80	84	3	213	23	20	27	27	1.99
63563890--63563922	17	1.9	17	88	11	50	69	0	0	30	0.88
63563890--63563923	18	1.9	17	88	5	50	70	0	0	29	0.87
63564215--63564298	19	5.1	15	82	15	73	35	15	11	36	1.84
63564215--63564298	35	2.5	32	87	12	132	35	15	11	36	1.84
63564225--63564300	19	4.2	19	91	8	131	36	15	10	36	1.82
63564651--63564847	45	4.4	45	86	1	270	25	28	13	31	1.94
63564651--63564834	89	2.1	90	89	1	280	26	29	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63564864--63565157	78	3.8	78	90	1	455	24	24	19	31	1.98
63565099--63565689	220	2.7	220	92	1	961	27	21	18	32	1.97
63567373--63567539	40	4.2	40	85	0	201	24	30	20	23	1.99
63582935--63583133	56	3.6	56	92	1	310	37	11	22	28	1.89
63585370--63585487	20	5.9	21	73	6	61	21	15	10	53	1.71
63585398--63585462	20	3.2	20	76	8	69	23	16	9	50	1.74
63585568--63585612	22	2.0	22	86	0	63	48	4	2	44	1.35
63593451--63593572	43	2.9	42	81	7	165	27	25	14	31	1.95
63595707--63595752	20	2.2	20	88	3	65	10	19	10	58	1.61
63595707--63595752	21	2.2	22	88	7	69	10	19	10	58	1.61
63595773--63595830	21	2.7	21	84	7	73	62	8	8	20	1.51
63596130--63596173	20	2.2	20	88	8	63	59	0	18	22	1.38
63596209--63596260	26	2.0	27	85	7	72	67	9	7	15	1.41
63596207--63596324	20	5.6	20	66	18	69	59	8	11	21	1.57
63596651--63596735	20	4.2	20	74	5	82	54	11	15	18	1.71
63596899--63596944	20	2.3	21	85	7	60	67	4	10	17	1.37
63598265--63598315	19	2.8	18	81	18	70	35	3	0	60	1.15
63598265--63598321	17	3.2	17	77	18	62	31	5	0	63	1.17
63599407--63599466	31	1.9	31	89	0	93	25	21	10	43	1.83
63599951--63600028	35	2.2	35	83	0	102	52	14	14	19	1.74
63600709--63600733	13	1.9	13	100	0	50	64	0	4	32	1.12
63601950--63601987	17	2.1	19	85	9	53	5	15	7	71	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63606077--63606109	16	2.1	16	94	0	57	27	6	24	42	1.78
63610024--63610082	19	3.0	19	82	9	66	55	3	0	40	1.16
63610021--63610081	20	3.1	19	84	15	72	59	3	0	37	1.14
63610596--63610693	48	2.0	48	96	0	178	36	13	9	40	1.76
63612012--63612087	11	6.8	11	68	24	52	55	1	1	42	1.16
63616695--63616785	44	2.1	44	89	0	137	48	10	12	28	1.74
63619324--63619370	23	2.0	23	95	0	85	31	21	6	40	1.78
63619713--63619772	30	2.0	29	84	9	77	60	1	5	33	1.29
63620855--63620895	20	2.0	20	86	9	57	39	0	2	58	1.11
63630234--63630900	3	224.0	3	67	16	193	61	3	6	29	1.36
63631552--63631582	11	2.9	11	95	4	55	19	0	0	80	0.71
63632727--63633082	75	4.7	76	89	4	504	33	19	17	29	1.95
63634710--63634806	30	3.2	30	75	2	106	28	26	15	28	1.96
63637470--63637540	37	1.9	37	86	11	101	76	2	18	2	1.04
63637480--63637529	6	8.2	6	83	14	50	76	2	20	2	0.99
63637590--63637632	12	3.6	12	100	0	86	44	13	16	25	1.85
63639807--63639903	30	3.2	30	75	2	106	28	26	15	28	1.96
63651094--63651129	15	2.5	15	90	4	56	69	13	0	16	1.19
63652178--63652220	20	2.0	23	86	13	65	62	4	0	32	1.15
63654935--63655050	43	2.7	44	70	6	110	22	25	19	32	1.97
63655030--63655194	44	3.7	44	74	8	129	27	21	19	32	1.97
63655163--63655555	88	4.4	92	75	12	248	23	24	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63655516--63655727	44	4.8	45	76	8	159	25	24	19	29	1.99
63655597--63655727	46	2.9	46	84	3	160	25	27	19	27	1.99
63675748--63676929	210	5.7	210	86	4	1544	29	17	22	30	1.97
63675748--63676929	420	2.8	413	86	5	1705	29	17	22	30	1.97
63678333--63678481	39	3.9	38	85	4	174	47	4	16	30	1.67
63678996--63679054	13	4.5	13	70	16	50	35	3	1	59	1.24
63679247--63679299	20	2.4	23	81	12	67	35	9	3	50	1.53
63680118--63680156	19	1.9	19	85	10	51	30	20	5	43	1.73
63682831--63682974	51	2.9	49	86	4	200	27	27	20	25	1.99
63685722--63685841	43	2.8	42	83	2	150	30	27	13	28	1.94
63709698--63709750	28	1.9	28	88	3	81	47	1	5	45	1.37
63711923--63711952	15	1.9	16	93	6	53	56	0	0	43	0.99
63712377--63712406	14	2.1	15	93	6	53	20	36	0	43	1.52
63719672--63719893	46	4.5	49	82	5	243	30	27	18	24	1.98
63719659--63719893	50	4.8	49	80	7	244	29	27	18	24	1.98
63722506--63723030	47	11.1	47	94	0	816	31	9	31	27	1.89
63723149--63723227	38	2.1	37	86	6	106	25	17	30	26	1.97
63742532--63742609	23	3.5	22	81	6	86	35	28	23	12	1.91
63742512--63742609	21	4.5	22	80	6	101	37	26	21	14	1.92
63742992--63743049	15	3.8	15	88	2	89	51	12	0	36	1.39
63747996--63748114	21	5.5	21	85	4	130	34	28	22	14	1.93
63748019--63748101	21	3.9	21	95	3	139	26	31	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63750569--63750593	13	1.9	13	100	0	50	32	0	40	28	1.57
63750566--63750600	11	3.0	11	84	15	52	34	0	37	28	1.58
63754618--63754684	34	1.9	35	85	8	93	19	22	11	46	1.82
63755659--63755805	60	2.5	60	73	9	140	26	24	19	29	1.98
63764698--63764888	40	4.8	40	88	2	251	23	24	28	23	1.99
63768097--63768121	12	2.1	12	100	0	50	40	0	8	52	1.31
63770116--63770163	25	1.9	25	86	0	69	31	22	16	29	1.96
63770293--63770388	25	3.9	24	82	9	104	28	23	22	25	2.00
63770294--63770388	50	1.9	50	82	8	122	28	23	23	25	1.99
63770585--63770692	31	3.5	31	90	0	171	31	20	27	20	1.97
63779595--63779839	92	2.7	92	86	0	337	31	19	23	25	1.98
63780014--63780049	4	9.0	4	100	0	72	25	0	25	50	1.50
63780339--63780385	20	2.3	21	88	3	69	14	10	46	27	1.78
63780545--63780578	13	2.6	13	90	0	59	5	26	47	20	1.73
63783366--63783525	86	1.9	87	82	6	209	40	18	24	16	1.91
63783368--63783658	44	6.7	44	73	7	234	38	18	25	17	1.93
63783365--63783658	22	13.5	22	68	12	167	38	18	25	17	1.93
63783365--63783657	66	4.5	66	75	11	215	38	18	25	17	1.92
63784971--63785045	30	2.5	29	91	4	105	54	10	5	29	1.57
63785235--63785272	17	2.5	15	80	19	51	39	10	15	34	1.82
63785241--63785273	17	1.9	17	100	0	66	39	12	12	36	1.80
63786451--63786492	17	2.5	17	96	0	75	16	21	16	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63796094--63796123	10	2.9	10	95	5	51	86	0	13	0	0.57
63797161--63797557	78	4.7	88	80	10	245	31	19	23	24	1.98
63797295--63797528	78	3.0	78	91	2	398	32	19	24	23	1.98
63797558--63797727	89	1.9	89	93	0	295	27	15	31	25	1.96
63797468--63797741	45	6.1	45	80	6	295	29	16	28	25	1.97
63798090--63798180	19	4.9	19	90	8	152	38	10	14	36	1.81
63798098--63798187	35	2.5	37	89	10	143	38	11	14	35	1.82
63799150--63799269	13	9.1	13	69	17	86	50	17	3	28	1.62
63799164--63799261	25	3.7	25	69	15	63	51	17	3	28	1.60
63806346--63806384	14	2.8	14	84	0	51	41	46	0	12	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333