Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  330  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106932256--106932374
9
12.7
9
66
15
53
63
0
2
32
1.13
106932264--106932313
20
2.6
19
87
12
75
56
0
0
44
0.99
106932264--106932337
20
3.8
20
81
11
57
62
0
2
35
1.10
106932305--106932355
18
2.8
17
85
11
66
68
0
5
25
1.12
106932342--106932385
19
2.2
20
84
11
56
68
4
0
27
1.09
106932342--106932386
20
2.2
20
84
7
56
68
4
0
26
1.08
106932467--106932509
9
4.6
9
80
8
50
25
4
0
69
1.07
106932465--106932552
27
3.2
26
77
14
88
34
2
1
62
1.15
106932466--106932553
19
4.7
19
76
9
76
32
2
1
63
1.14
106932505--106932553
9
5.4
9
80
9
55
36
0
2
61
1.08
106943037--106943067
16
1.9
16
93
0
53
25
9
3
61
1.42
106947851--106947924
31
2.4
30
77
6
76
51
16
6
25
1.69
106955502--106955534
17
1.9
17
88
11
50
54
3
0
42
1.15
106966425--106966490
33
1.9
35
87
6
100
40
0
4
54
1.21
106966466--106966518
20
2.7
20
88
5
72
30
1
9
58
1.40
106969625--106969668
18
2.4
18
92
0
70
15
4
22
56
1.57
106975378--106975413
7
5.1
7
93
0
63
27
13
30
27
1.94
106979037--106979065
4
7.2
4
100
0
58
51
24
0
24
1.48
106981569--106981595
11
2.5
11
100
0
54
85
0
7
7
0.75
106992784--106992861
20
3.5
20
71
24
66
38
1
1
58
1.14
106992801--106992838
19
2.0
19
89
0
58
39
2
2
55
1.28
106992806--106992860
29
1.9
28
85
10
76
36
1
1
60
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106994491--106994806
81
3.8
84
79
7
340
36
6
24
32
1.80
106994491--106994819
166
2.0
170
82
5
409
36
7
24
32
1.83
106997279--106997333
4
14.2
4
77
7
51
41
25
7
25
1.81
106997282--106997333
26
2.0
26
88
0
77
42
25
7
25
1.81
106997812--106997843
14
2.3
14
94
0
55
40
6
9
43
1.62
106997992--106998033
16
2.5
17
76
7
50
26
9
11
52
1.68
107004803--107004870
24
2.8
24
81
4
73
60
10
1
27
1.38
107014687--107014745
25
2.4
25
83
5
77
50
0
6
42
1.28
107019163--107019196
12
2.8
12
86
0
50
5
2
55
35
1.39
107019862--107019905
16
2.8
15
83
10
52
56
2
6
34
1.38
107026532--107026612
40
2.0
40
100
0
162
49
9
9
30
1.69
107028485--107028512
14
2.0
14
100
0
56
42
7
21
28
1.79
107033308--107033355
20
2.4
19
77
19
53
50
4
8
37
1.52
107035897--107035943
21
2.2
22
92
3
78
21
38
19
21
1.94
107040761--107040818
21
2.8
21
82
10
75
6
29
3
60
1.39
107040888--107040943
29
1.9
29
82
7
69
69
3
23
3
1.20
107041108--107041141
15
2.3
15
94
0
59
50
5
17
26
1.69
107050094--107050144
4
12.8
4
100
0
102
50
25
0
23
1.49
107058903--107058965
31
2.0
31
96
0
117
34
17
6
41
1.75
107058968--107059044
4
19.5
4
83
2
93
49
27
1
22
1.58
107062238--107062268
3
10.3
3
92
0
53
61
0
3
35
1.12
107062709--107062736
2
14.0
2
100
0
56
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107064789--107064838
24
2.0
25
84
7
66
36
0
0
64
0.94
107067762--107067805
19
2.4
18
85
11
54
25
2
2
70
1.10
107069123--107069201
39
2.0
39
100
0
158
30
17
16
35
1.92
107072452--107072512
31
2.0
31
86
0
86
34
11
13
40
1.80
107074263--107074303
17
2.3
18
80
16
50
75
2
0
21
0.92
107084901--107084962
27
2.2
28
83
11
83
48
3
4
43
1.40
107086553--107086612
4
15.0
4
89
0
93
28
1
25
45
1.63
107086822--107086859
4
9.5
4
94
0
58
23
5
26
44
1.74
107087235--107087271
12
3.1
12
88
0
56
48
37
0
13
1.43
107091178--107091211
16
2.1
17
94
5
61
35
5
5
52
1.50
107101848--107101975
39
3.3
39
82
0
166
31
19
26
22
1.98
107101851--107102001
78
1.9
77
81
4
178
29
21
27
22
1.99
107104195--107104379
79
2.3
81
80
8
209
24
27
22
24
2.00
107104176--107104379
40
5.1
40
80
8
220
24
27
22
25
2.00
107105443--107105566
41
3.0
41
91
4
189
28
23
20
28
1.99
107113006--107113202
41
4.8
40
90
6
254
28
23
19
27
1.99
107112964--107113202
82
2.9
81
83
6
275
27
24
20
28
1.99
107112964--107113192
123
1.9
122
85
7
320
27
24
19
28
1.99
107128497--107128555
29
2.0
29
96
0
109
27
11
8
52
1.66
107128607--107128665
26
2.3
26
91
2
75
30
10
10
49
1.70
107142680--107142715
14
2.6
14
95
0
63
50
16
0
33
1.46
107142685--107142739
14
4.1
14
76
9
51
45
9
5
40
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107145614--107145649
19
1.9
18
88
5
54
38
0
2
58
1.13
107150974--107151017
18
2.4
18
88
0
70
29
18
18
34
1.94
107150984--107151023
18
2.2
18
86
0
53
42
12
20
25
1.86
107151954--107152007
23
2.4
22
79
11
65
62
1
1
33
1.16
107158059--107158245
93
2.0
93
98
0
365
23
16
24
36
1.94
107161228--107161268
18
2.3
18
87
8
57
56
2
2
39
1.26
107161397--107161439
15
2.8
15
82
3
50
32
2
0
65
1.06
107162406--107162446
16
2.5
17
96
4
75
36
21
24
17
1.94
107170363--107170404
21
2.0
21
100
0
84
52
19
0
28
1.46
107184995--107185041
9
5.3
9
78
14
53
31
0
8
59
1.27
107185001--107185041
13
3.1
14
82
10
59
31
0
7
60
1.24
107189160--107189199
21
1.9
21
89
0
62
55
5
0
40
1.22
107191967--107192085
59
2.0
59
100
0
238
16
16
11
54
1.70
107195294--107195341
24
2.0
24
84
8
62
54
2
10
33
1.46
107195428--107195454
12
2.2
12
100
0
54
22
14
7
55
1.64
107197435--107197476
22
1.9
22
85
0
57
35
7
9
47
1.64
107202668--107202695
3
9.3
3
100
0
56
32
0
0
67
0.91
107206842--107206912
29
2.4
31
79
13
78
53
2
4
39
1.35
107207787--107207834
20
2.3
20
86
10
62
50
4
0
45
1.21
107208562--107208634
29
2.5
28
82
14
85
46
0
5
47
1.25
107208562--107208634
30
2.5
29
84
10
87
46
0
5
47
1.25
107211569--107211610
21
2.0
21
90
0
66
76
0
4
19
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107211913--107211953
3
13.7
3
84
0
55
7
29
0
63
1.21
107212471--107212533
30
2.1
31
87
3
92
15
7
4
71
1.27
107212714--107212764
20
2.4
21
83
6
68
13
3
13
68
1.34
107212714--107212764
21
2.4
22
83
9
70
13
3
13
68
1.34
107216448--107216499
25
2.1
25
100
0
104
53
15
15
15
1.73
107217610--107217655
24
1.9
24
100
0
92
43
0
10
45
1.39
107223715--107223762
19
2.8
17
81
12
62
75
2
10
12
1.14
107226522--107226575
22
2.5
22
81
9
65
50
3
0
46
1.19
107227372--107227425
21
2.5
22
72
9
56
59
3
5
31
1.38
107233410--107233541
68
1.9
69
93
1
230
39
16
12
31
1.87
107236559--107236593
18
1.9
18
88
0
52
5
48
11
34
1.63
107246185--107246213
14
2.1
14
93
6
51
72
0
3
24
1.00
107249477--107249514
20
2.0
20
89
5
60
50
2
0
47
1.15
107254815--107255332
257
2.0
257
93
0
883
33
13
15
37
1.87
107273138--107273495
179
2.0
179
97
0
680
34
11
10
43
1.75
107283931--107283969
12
3.1
12
82
13
51
74
0
5
20
1.01
107283931--107283963
14
2.5
13
90
9
50
75
0
6
18
1.00
107288550--107288591
18
2.5
17
80
7
50
38
4
7
50
1.51
107301206--107301254
24
2.0
24
84
7
64
38
4
0
57
1.18
107312006--107312040
17
2.0
18
88
5
54
60
0
8
31
1.27
107318735--107318769
3
11.7
3
100
0
70
65
0
0
34
0.93
107319555--107319620
31
2.1
31
83
5
80
40
12
22
24
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107328602--107328666
28
2.2
30
81
5
80
43
9
7
40
1.65
107337348--107337457
31
3.4
32
81
8
118
47
11
5
35
1.63
107337348--107337500
31
4.9
31
75
8
105
43
13
4
37
1.65
107347327--107347462
66
2.1
66
100
0
272
20
28
24
26
1.99
107355572--107355667
48
2.0
48
100
0
192
29
31
16
22
1.96
107358006--107358040
18
1.9
18
88
0
52
28
5
42
22
1.76
107365682--107365733
24
2.2
24
89
0
77
55
9
1
32
1.43
107367651--107367702
24
2.2
24
92
0
86
57
9
0
32
1.31
107376363--107376401
12
3.4
11
89
7
51
74
5
0
20
1.01
107376509--107376559
14
3.6
14
73
5
57
62
1
7
27
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333