genome.fa.s3.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  133  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43211195--43211340	51	2.9	50	83	3	195	27	26	20	25	1.99
43230300--43230325	10	2.6	10	100	0	52	30	0	0	69	0.89
43231950--43232040	32	2.9	32	90	4	132	36	12	23	28	1.90
43232043--43232159	31	3.8	31	91	0	180	28	18	26	26	1.98
43232251--43232315	27	2.4	27	92	0	103	38	13	26	21	1.91
43232364--43232442	34	2.4	34	86	2	97	29	11	27	31	1.91
43233449--43233489	20	2.0	21	95	4	75	39	4	21	34	1.75
43238837--43239062	40	5.7	40	90	4	298	25	21	26	26	2.00
43238848--43239095	80	3.1	79	82	8	236	27	20	25	26	1.99
43238837--43239095	120	2.2	120	81	7	287	26	20	26	26	1.99
43244618--43244820	39	5.3	39	85	5	245	25	21	28	24	1.99
43244565--43244820	39	6.6	39	79	11	215	25	21	28	25	1.99
43244618--43244853	78	3.1	78	79	9	195	25	21	28	23	1.99
43252458--43252717	40	6.6	39	83	8	233	25	21	27	25	1.99
43252577--43252754	79	2.2	80	80	3	191	25	21	28	24	1.99
43256971--43257121	43	3.5	44	85	4	209	27	13	25	33	1.93
43258900--43258952	26	2.0	26	85	0	70	24	28	15	32	1.95
43260902--43260945	23	1.9	23	86	9	63	79	2	6	11	1.01
43272140--43272319	49	3.7	49	80	5	170	23	29	20	26	1.99
43272695--43272753	27	2.2	27	96	0	109	25	18	11	44	1.84
43275233--43275282	20	2.5	20	83	0	64	6	30	24	40	1.79
43276281--43276318	20	1.9	20	88	0	58	47	18	5	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43277549--43277608	19	3.2	19	90	2	86	23	18	23	35	1.96
43280760--43280937	27	6.6	27	84	3	205	29	28	15	26	1.96
43280781--43280936	82	1.9	81	88	3	233	29	28	15	26	1.96
43281419--43281445	12	2.2	12	100	0	54	40	0	7	51	1.30
43288780--43288957	27	6.6	27	84	3	205	29	28	15	26	1.96
43288801--43288956	82	1.9	81	88	3	233	29	28	15	26	1.96
43289443--43289469	12	2.2	12	100	0	54	40	0	7	51	1.30
43291589--43291633	24	1.9	23	86	4	63	8	42	4	44	1.56
43292854--43292973	43	2.8	42	83	7	170	31	15	24	29	1.95
43295072--43295101	6	4.8	6	95	4	51	83	0	0	16	0.65
43296925--43296974	21	2.3	22	86	3	66	16	38	34	12	1.85
43299400--43299587	40	4.7	40	94	0	304	22	26	19	30	1.98
43307025--43307172	40	3.7	40	96	0	260	20	26	20	31	1.98
43310390--43310513	39	3.2	39	88	0	176	23	21	29	25	1.99
43314500--43314531	11	3.0	11	95	4	57	34	18	0	46	1.49
43318550--43318612	33	2.0	33	84	12	87	26	26	20	25	1.99
43322984--43323018	8	4.4	8	92	0	61	40	0	34	25	1.56
43323389--43323527	37	3.8	36	79	11	142	24	19	31	24	1.98
43323391--43323527	74	1.9	73	85	10	190	24	18	31	24	1.98
43332027--43332065	21	1.9	20	84	5	51	28	12	10	48	1.74
43334629--43334663	10	3.5	10	88	0	52	22	28	14	34	1.93
43334630--43334676	20	2.3	20	85	0	67	23	23	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43334876--43334921	22	2.1	22	100	0	92	26	13	15	45	1.82
43338452--43338629	27	6.6	27	83	3	205	26	15	28	29	1.96
43338453--43338608	82	1.9	81	88	3	233	26	15	28	29	1.96
43338449--43338629	82	2.2	81	83	2	229	27	15	27	29	1.96
43346846--43347023	27	6.6	27	82	3	196	26	14	28	30	1.95
43346847--43347002	82	1.9	81	86	3	224	26	14	28	30	1.95
43346843--43347023	82	2.2	81	82	2	220	27	14	27	30	1.95
43354361--43354397	18	2.1	18	100	0	74	21	10	16	51	1.74
43361217--43361497	39	7.2	39	90	0	427	24	23	28	23	1.99
43365496--43365526	14	2.1	15	94	5	55	41	0	12	45	1.42
43367241--43367560	39	8.2	39	93	0	532	24	23	28	23	1.99
43371588--43371765	27	6.6	27	83	3	196	30	28	15	26	1.96
43371609--43371764	82	1.9	81	86	3	224	30	28	15	26	1.96
43394009--43394131	37	3.4	37	84	5	144	24	30	19	25	1.98
43394502--43394536	8	4.4	8	92	0	61	25	34	0	40	1.56
43407607--43407730	39	3.2	39	81	6	135	29	29	17	24	1.97
43412297--43412388	48	1.9	48	88	4	141	28	27	14	30	1.95
43412384--43412523	37	3.8	37	84	7	171	25	30	17	26	1.97
43412384--43412529	74	2.0	73	86	6	206	26	31	16	26	1.96
43412895--43412921	8	3.4	8	100	0	54	22	37	0	40	1.54
43416365--43416550	67	2.9	64	77	8	189	30	16	29	23	1.96
43443408--43443727	46	7.0	46	94	0	489	22	23	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43445808--43445855	11	4.2	11	79	10	51	62	2	0	35	1.07
43446749--43446883	55	2.5	55	90	3	202	28	31	20	20	1.97
43447630--43447900	140	1.9	142	82	9	342	23	30	19	26	1.98
43449280--43449361	42	2.0	42	85	4	114	24	23	2	50	1.62
43452204--43452277	34	2.2	33	83	7	96	27	20	22	29	1.98
43462401--43462440	18	2.2	18	86	8	55	20	25	37	17	1.94
43466038--43466162	55	2.3	55	95	0	223	23	3	30	43	1.69
43469172--43469253	42	2.0	41	85	4	112	12	36	26	24	1.91
43474917--43475001	44	1.9	44	81	9	102	31	28	17	22	1.97
43475168--43475307	69	2.0	69	100	0	280	45	14	8	32	1.75
43476771--43476877	54	2.0	54	98	0	205	32	23	14	28	1.95
43478163--43478196	17	2.0	17	100	0	68	29	5	29	35	1.81
43480742--43480829	44	2.0	44	84	8	117	29	27	20	22	1.99
43493215--43493355	43	3.3	43	95	0	255	9	24	33	32	1.88
43496399--43496424	13	2.0	13	100	0	52	61	30	0	7	1.24
43497585--43497635	25	2.0	25	100	0	102	25	19	11	43	1.85
43507350--43507374	12	2.1	12	100	0	50	24	40	28	8	1.83
43509017--43509182	49	3.4	47	73	15	128	24	27	18	29	1.98
43509156--43509284	46	2.8	45	82	10	149	25	28	16	29	1.97
43513201--43513253	26	2.0	26	85	7	72	20	16	22	39	1.92
43514507--43514605	24	4.1	24	89	1	135	21	38	4	36	1.72
43521114--43521219	24	4.4	24	89	1	149	18	37	5	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43524592--43524948	47	8.1	47	77	13	334	32	8	29	29	1.87
43525064--43525142	37	2.1	37	88	4	115	25	18	30	25	1.98
43526996--43527098	43	2.4	43	98	0	197	22	15	34	27	1.94
43527083--43527153	29	2.4	29	88	4	99	26	16	30	25	1.97
43527464--43527659	40	4.9	40	78	5	166	25	21	27	25	2.00
43527464--43527660	80	2.5	81	80	5	204	25	22	26	25	2.00
43531061--43531440	47	8.1	47	93	0	625	32	8	30	28	1.88
43531559--43531637	37	2.1	37	88	4	115	25	18	30	25	1.98
43548146--43548330	40	4.7	40	82	6	216	24	27	22	24	2.00
43548148--43548330	79	2.3	81	82	7	214	24	27	22	25	2.00
43564430--43564472	17	2.5	17	80	0	50	69	4	0	25	1.07
43564433--43564474	22	1.9	22	85	9	59	66	4	0	28	1.12
43569716--43569889	49	3.5	49	85	6	210	37	13	14	33	1.86
43573512--43573589	39	2.0	39	97	0	147	42	23	11	23	1.86
43576175--43576235	30	2.0	30	83	0	77	40	3	24	31	1.71
43576746--43576897	67	2.2	68	80	10	177	31	17	30	21	1.96
43579977--43580037	30	2.0	30	87	0	86	39	6	22	31	1.80
43584768--43584792	12	2.1	12	100	0	50	60	16	8	16	1.58
43589912--43589975	31	2.0	32	96	3	121	48	14	12	25	1.78
43591416--43591588	47	3.7	47	79	6	181	26	30	17	25	1.98
43591320--43591546	47	4.8	47	73	12	180	25	31	17	25	1.97
43591320--43591589	94	2.9	94	78	9	293	26	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43597032--43597083	27	2.0	26	84	3	68	17	26	21	34	1.95
43602451--43602513	31	2.0	31	100	0	126	55	15	6	22	1.63
43609305--43609334	12	2.4	13	94	5	53	63	0	6	30	1.20
43612809--43612863	28	2.0	28	85	0	74	27	23	23	25	2.00
43617960--43618094	55	2.5	55	78	0	144	29	31	25	13	1.94
43630497--43630537	20	2.0	21	90	4	66	17	4	0	78	0.93
43630497--43630535	11	3.6	12	77	22	50	15	5	0	79	0.90
43633805--43634041	50	4.8	49	80	5	215	26	16	26	30	1.97
43633805--43634046	101	2.4	98	80	6	245	27	16	26	29	1.97
43634134--43634185	26	2.0	26	85	11	70	38	1	21	38	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333