Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  278  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92097866--92098015
79
1.9
79
83
2
194
32
10
10
47
1.71
92100137--92100173
17
2.1
19
85
10
51
40
8
5
45
1.56
92100191--92100223
5
6.6
5
100
0
66
42
0
0
57
0.98
92102298--92102454
43
3.7
43
70
15
128
27
19
21
32
1.97
92104473--92104623
43
3.5
42
78
12
146
26
16
24
32
1.96
92104486--92104645
86
1.9
86
84
2
214
25
17
26
30
1.97
92108300--92108330
14
2.2
14
94
0
53
25
0
16
58
1.38
92108758--92108916
24
6.6
24
78
8
135
22
13
31
32
1.92
92114289--92114476
40
4.7
40
88
3
290
25
27
21
25
2.00
92121610--92121835
47
4.9
46
83
8
214
27
30
19
21
1.98
92121664--92121786
47
2.6
47
98
0
237
26
30
20
21
1.98
92125111--92125298
40
4.7
40
87
3
281
26
27
21
25
1.99
92136752--92136782
13
2.4
13
94
0
53
74
3
19
3
1.10
92137600--92137759
43
3.7
42
78
6
153
25
18
26
28
1.98
92141287--92141329
17
2.5
17
96
0
77
67
4
27
0
1.10
92142625--92142696
34
2.1
35
84
7
94
20
26
11
41
1.86
92151966--92152003
14
2.9
13
81
11
51
18
13
10
57
1.63
92156627--92156686
30
2.0
30
86
0
84
28
25
6
40
1.80
92158739--92158889
68
2.3
64
81
10
162
31
15
27
26
1.96
92164558--92164582
13
1.9
13
100
0
50
32
4
24
40
1.73
92165681--92165830
43
3.5
43
80
13
168
24
18
24
32
1.97
92165679--92165845
85
2.0
86
82
5
205
23
18
25
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92170827--92171234
47
8.6
47
92
2
636
32
8
29
29
1.87
92170827--92171234
96
4.3
94
93
1
636
32
8
29
29
1.87
92173155--92173199
4
11.2
4
82
17
58
68
0
31
0
0.89
92173158--92173190
9
3.8
9
96
4
59
69
0
30
0
0.88
92173155--92173199
14
3.4
14
87
9
67
68
0
31
0
0.89
92178610--92178648
20
2.0
20
100
0
78
41
10
7
41
1.68
92196435--92196467
6
5.5
6
96
0
57
81
0
3
15
0.80
92201838--92201863
13
2.0
13
100
0
52
53
15
0
30
1.42
92210339--92210367
13
2.2
13
100
0
58
55
13
0
31
1.39
92217940--92218066
45
2.9
44
82
8
136
25
27
22
25
2.00
92218396--92218528
43
3.1
42
85
2
160
31
30
23
14
1.94
92218505--92218701
38
5.1
38
81
2
241
31
23
21
23
1.98
92222620--92222697
5
15.6
5
100
0
156
41
0
0
58
0.98
92222899--92222940
21
2.0
21
86
9
59
71
2
26
0
0.98
92224072--92224124
16
3.3
16
76
10
54
33
5
24
35
1.79
92225358--92225392
13
2.8
13
91
4
54
28
0
0
71
0.86
92225512--92225571
30
2.0
29
87
3
84
55
11
5
28
1.57
92225605--92225647
22
2.0
22
85
0
59
58
11
11
18
1.63
92225612--92225652
11
3.7
11
80
0
55
56
9
14
19
1.66
92229972--92230205
40
5.9
40
92
0
389
26
23
27
23
2.00
92229972--92230232
120
2.2
119
88
4
382
26
24
26
22
2.00
92238053--92238286
40
5.9
40
95
0
398
26
22
27
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92238053--92238313
120
2.2
119
88
4
391
27
22
27
22
1.99
92242155--92242182
14
2.0
14
100
0
56
35
7
7
50
1.57
92242504--92242542
18
2.3
18
86
8
55
43
12
5
38
1.65
92242699--92242729
15
2.1
15
100
0
62
22
32
6
38
1.80
92246091--92246120
15
2.0
15
93
0
51
23
46
6
23
1.75
92246862--92246900
18
2.3
18
86
8
55
43
12
5
38
1.65
92247057--92247087
15
2.1
15
100
0
62
22
32
6
38
1.80
92252792--92253169
191
2.0
190
84
2
490
38
11
21
29
1.88
92255851--92255891
19
2.2
20
82
8
50
34
2
4
58
1.32
92260998--92261035
16
2.4
16
86
4
51
34
5
5
55
1.45
92262100--92262125
9
2.9
9
100
0
52
46
0
0
53
1.00
92262653--92262693
19
2.2
19
91
4
66
51
0
14
34
1.43
92263367--92263451
43
2.0
43
88
0
125
49
3
24
22
1.65
92264485--92264526
22
2.0
22
85
4
59
33
11
7
47
1.68
92264765--92264872
49
2.2
49
91
1
171
43
7
24
25
1.80
92274215--92274243
13
2.2
13
100
0
58
51
0
0
48
1.00
92285801--92285877
39
2.0
39
100
0
154
38
11
12
36
1.80
92287744--92287865
46
2.6
46
76
7
120
29
18
28
22
1.98
92294670--92295171
47
10.6
47
93
1
788
33
8
28
29
1.86
92294670--92295171
96
5.3
96
91
3
804
33
8
28
29
1.86
92294670--92295171
143
3.5
143
93
1
832
33
8
28
29
1.86
92298475--92298847
46
7.9
48
73
13
229
29
17
28
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92298624--92298797
50
3.6
49
78
9
160
27
17
28
26
1.98
92304945--92305206
79
3.3
80
89
4
363
25
27
22
25
2.00
92304924--92305206
40
7.1
40
80
9
312
25
27
21
25
2.00
92311848--92311914
20
3.3
20
95
0
125
35
11
19
32
1.88
92311859--92311914
11
5.5
11
75
16
66
35
12
19
32
1.89
92311964--92312088
26
4.8
26
87
0
187
26
22
22
28
1.99
92311964--92312088
52
2.4
52
91
2
207
26
22
22
28
1.99
92318720--92318786
20
3.3
20
91
0
107
35
11
19
32
1.88
92318836--92318934
26
3.8
26
83
0
135
28
26
20
25
1.99
92324008--92324111
46
2.3
46
77
0
109
32
21
18
27
1.96
92328660--92328882
79
2.8
78
82
9
265
24
27
22
25
2.00
92328660--92328882
39
5.7
40
86
8
266
24
27
22
25
2.00
92336646--92336906
39
6.6
39
87
6
309
24
27
22
25
2.00
92339677--92339711
14
2.5
14
90
0
52
74
14
0
11
1.08
92348609--92348834
27
8.4
27
84
1
274
35
18
20
25
1.95
92348609--92348816
107
1.9
107
85
1
283
36
18
19
25
1.95
92349482--92349534
27
2.0
27
84
0
70
24
24
20
30
1.99
92349550--92349613
33
2.0
32
84
3
83
20
21
20
37
1.94
92349575--92349634
27
2.3
26
88
2
84
20
23
21
35
1.96
92355430--92355629
27
7.4
27
86
0
265
34
18
21
25
1.96
92357429--92357576
40
3.7
40
87
3
190
36
26
14
22
1.92
92358889--92358926
20
1.9
20
88
0
58
44
10
7
36
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92369274--92369357
42
2.0
42
92
0
141
33
32
16
17
1.93
92374511--92374732
40
5.6
40
90
1
340
23
21
25
28
1.99
92381475--92381623
47
3.2
47
88
1
165
34
28
14
22
1.94
92381449--92381623
94
1.9
94
81
0
215
33
28
16
22
1.95
92382270--92382298
10
2.7
11
89
10
51
48
17
0
34
1.47
92386925--92386956
13
2.3
15
89
10
50
18
34
9
37
1.83
92391905--92392156
68
3.8
64
75
11
206
25
29
15
29
1.96
92396438--92396496
30
2.0
30
83
6
75
32
23
0
44
1.54
92398592--92398655
32
2.0
32
90
0
101
26
17
26
29
1.97
92407901--92408076
46
3.8
45
77
11
196
21
19
28
29
1.98
92407898--92408068
93
1.8
93
92
2
290
21
20
29
28
1.98
92418192--92418324
39
3.4
40
82
3
119
34
27
18
19
1.95
92418225--92418614
39
9.9
39
81
3
210
30
26
20
22
1.98
92418241--92418622
79
4.9
78
79
4
399
30
25
21
22
1.99
92418272--92418597
118
2.8
118
88
3
467
30
26
21
22
1.99
92421563--92421592
12
2.5
12
100
0
60
43
0
6
50
1.28
92424417--92424554
39
3.5
40
77
4
102
31
24
23
19
1.98
92424458--92424885
39
10.9
39
85
3
464
27
26
23
22
1.99
92424497--92424885
119
3.3
118
83
3
480
27
26
23
22
1.99
92426694--92426850
29
5.5
28
90
2
206
28
11
26
33
1.91
92426694--92426849
57
2.7
58
88
3
210
28
11
26
33
1.91
92429851--92430001
68
2.3
64
83
10
180
28
15
29
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92429896--92430049
67
2.3
65
84
7
184
33
16
29
21
1.95
92433419--92433448
12
2.5
12
100
0
60
43
0
6
50
1.28
92436309--92436746
39
11.1
39
82
6
121
29
26
21
22
1.99
92436356--92436726
39
9.4
40
85
3
394
28
27
22
21
1.99
92436356--92436744
119
3.3
117
85
3
496
29
27
22
21
1.99
92437478--92437532
24
2.3
23
84
9
67
74
1
20
3
1.06
92437915--92438059
40
3.6
40
80
9
170
24
22
28
24
2.00
92437915--92438078
40
4.1
40
79
7
118
24
21
28
25
1.99
92437914--92438092
80
2.2
80
79
4
175
25
21
27
25
1.99
92444611--92444666
24
2.4
24
82
8
71
71
1
21
5
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333