genome.fa.s3.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  152  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49665460--49665754	77	3.7	77	80	9	285	27	12	11	48	1.76
49671415--49671445	16	2.0	16	93	6	55	32	0	45	22	1.53
49671531--49671584	16	3.2	16	72	23	56	27	12	20	38	1.89
49671539--49671595	17	3.3	17	71	22	55	24	10	26	38	1.88
49671514--49671671	35	4.5	35	77	1	147	22	10	27	40	1.86
49681837--49681875	20	2.0	20	89	0	60	48	0	12	38	1.42
49683981--49684156	46	3.8	46	76	4	174	31	28	19	21	1.97
49683990--49684159	93	1.8	93	90	0	277	29	28	20	21	1.98
49684032--49684175	46	3.1	45	72	21	127	29	29	18	22	1.97
49689805--49689846	21	2.0	21	100	0	84	42	14	19	23	1.87
49719368--49719927	47	11.9	47	93	1	946	31	8	30	29	1.87
49719368--49719927	186	3.0	188	94	2	955	31	8	30	29	1.87
49720046--49720124	37	2.1	37	88	0	113	24	17	31	26	1.97
49721337--49721562	40	5.7	40	91	2	355	22	22	29	25	1.99
49724973--49725474	47	10.9	47	91	5	803	31	8	30	28	1.88
49725302--49725372	35	2.0	35	97	0	133	32	5	29	32	1.81
49725256--49725419	82	2.0	82	97	0	310	31	7	30	30	1.85
49725593--49725671	37	2.1	37	88	0	113	24	17	31	26	1.97
49729753--49729928	46	3.8	46	79	12	207	21	20	27	30	1.98
49729750--49729920	93	1.8	93	93	0	297	21	21	28	29	1.98
49733178--49733210	14	2.4	14	95	5	59	75	0	6	18	1.00
49735376--49735435	23	2.6	23	97	0	111	36	48	3	11	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49735438--49735513	40	1.9	40	89	5	118	32	31	15	19	1.94
49737684--49737716	17	1.9	17	93	0	57	48	0	12	39	1.40
49737707--49737741	9	3.9	9	88	0	52	45	0	2	51	1.16
49737697--49737749	13	4.1	13	76	7	54	45	0	9	45	1.36
49740942--49741020	27	2.9	27	84	0	104	39	22	13	24	1.91
49741280--49741323	22	2.0	22	86	0	61	13	29	29	27	1.94
49741485--49741518	18	1.9	18	88	5	52	29	17	11	41	1.85
49742772--49742874	28	3.7	28	85	0	143	27	34	13	24	1.93
49743087--49743140	16	3.4	16	85	12	76	11	11	24	53	1.68
49748192--49749202	47	21.3	47	92	2	1637	33	8	28	29	1.87
49748192--49749202	190	5.3	188	92	2	1637	33	8	28	29	1.87
49749321--49749422	37	2.8	37	93	0	168	25	18	29	26	1.98
49751989--49752022	18	1.9	18	88	5	52	29	17	11	41	1.85
49756279--49756728	47	9.6	47	93	2	753	29	29	8	32	1.87
49757237--49757290	22	2.5	22	79	11	65	12	16	27	42	1.85
49765233--49765344	27	4.1	27	83	7	129	14	24	24	37	1.92
49765233--49765344	54	2.1	54	86	3	154	14	24	24	37	1.92
49768834--49768865	16	2.1	16	88	11	50	31	37	9	21	1.85
49776406--49776628	49	4.6	49	76	6	179	22	29	19	28	1.98
49776405--49776590	98	1.9	97	86	3	266	22	30	19	28	1.98
49778064--49778143	30	2.7	30	92	0	133	20	13	25	41	1.88
49778067--49778164	30	3.3	30	86	2	108	21	14	22	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49778151--49778260	29	3.8	29	76	2	94	19	16	27	37	1.93
49778181--49778404	30	7.5	30	68	10	145	19	15	21	42	1.88
49778152--49778402	59	4.2	59	79	2	268	21	16	21	40	1.91
49778172--49778404	120	2.0	118	86	1	322	20	16	21	41	1.90
49778591--49778661	30	2.4	29	85	4	88	21	12	26	39	1.89
49789075--49789467	194	2.0	194	99	0	777	33	23	15	27	1.95
49801061--49801131	35	2.0	35	88	0	106	26	11	23	38	1.89
49802485--49802706	46	4.8	46	82	7	279	29	28	19	21	1.98
49805861--49806032	40	4.3	40	88	2	222	25	27	21	25	1.99
49805863--49806085	40	5.6	39	83	5	216	25	27	21	25	1.99
49805861--49806085	80	2.8	79	80	7	240	25	27	21	25	1.99
49806017--49806094	40	1.9	41	82	10	97	26	28	20	24	1.99
49810291--49810465	27	6.6	27	83	5	169	30	28	14	27	1.95
49810291--49810465	54	3.3	54	81	7	196	30	28	14	27	1.95
49810312--49810461	81	1.9	79	86	5	212	30	28	14	27	1.95
49818470--49818647	27	6.6	27	82	3	169	30	28	14	26	1.95
49818491--49818642	82	1.9	81	86	4	216	30	28	13	26	1.94
49822727--49822898	40	4.3	40	80	5	188	25	26	23	24	2.00
49831044--49831070	12	2.2	12	100	0	54	51	7	0	40	1.30
49831519--49831616	27	3.5	28	90	2	135	26	13	28	31	1.94
49831547--49831629	27	3.0	27	87	5	96	30	12	25	32	1.92
49834584--49834652	32	2.1	33	91	2	113	31	11	20	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49835268--49835381	52	2.2	52	85	0	147	37	14	19	28	1.91
49835272--49835371	24	4.0	24	72	10	92	40	16	18	26	1.90
49835407--49835555	51	2.9	51	91	4	239	32	14	24	28	1.95
49839182--49839251	35	2.0	35	91	0	113	42	25	7	24	1.80
49862626--49862803	27	6.6	27	83	3	205	26	15	28	29	1.96
49862627--49862782	82	1.9	81	88	3	233	26	15	28	29	1.96
49862623--49862803	82	2.2	81	83	2	229	27	15	27	29	1.96
49870599--49870775	27	6.6	27	82	5	187	26	15	28	29	1.96
49870596--49870775	81	2.2	81	81	3	220	26	15	28	29	1.96
49872616--49872760	37	3.9	37	90	3	211	25	31	20	22	1.98
49872622--49872760	74	1.9	74	92	0	233	25	31	18	23	1.97
49872879--49873326	47	9.6	47	87	7	648	29	29	7	33	1.85
49873024--49873081	16	3.4	16	75	25	64	34	29	0	36	1.58
49873019--49873091	36	2.0	36	100	0	146	32	31	0	35	1.58
49873055--49873326	49	5.7	47	91	4	445	29	28	7	34	1.84
49873055--49873326	96	2.8	96	99	0	535	29	28	7	34	1.84
49875570--49875748	85	2.1	85	98	0	349	26	27	8	37	1.85
49891322--49891465	7	21.0	7	68	14	59	22	0	34	43	1.53
49891370--49891462	35	2.6	36	78	11	86	22	0	34	43	1.54
49891406--49891482	35	2.2	34	90	2	118	15	1	37	45	1.55
49891680--49891949	123	2.2	122	87	2	373	36	10	26	26	1.89
49891712--49891994	123	2.3	123	84	4	349	31	11	28	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49891712--49892043	123	2.7	123	81	6	298	32	12	26	28	1.93
49893326--49893356	5	6.2	5	100	0	62	38	19	0	41	1.51
49894832--49894864	13	2.4	14	90	5	50	30	0	3	66	1.06
49894691--49895044	101	3.4	104	90	4	565	34	5	3	56	1.40
49895308--49895394	18	5.2	18	68	19	71	47	14	0	37	1.45
49895300--49895413	47	2.4	47	98	0	219	48	14	0	36	1.45
49895314--49895429	9	13.0	9	70	17	55	46	16	0	37	1.47
49902126--49902190	27	2.4	27	92	0	112	38	20	10	30	1.86
49902103--49902200	27	3.6	26	78	10	90	39	22	10	27	1.86
49902239--49902691	26	17.2	27	80	7	420	37	17	20	24	1.94
49902239--49902688	79	5.7	81	85	7	606	37	17	20	24	1.94
49902246--49902688	105	4.2	107	81	7	487	37	17	20	24	1.94
49903104--49903296	6	31.3	6	70	16	92	19	18	12	48	1.80
49903104--49903171	25	2.7	25	83	0	91	19	20	14	45	1.85
49903130--49903201	19	3.9	19	80	12	87	18	22	15	44	1.86
49903105--49903296	62	3.1	62	80	2	217	19	18	13	48	1.80
49905397--49905559	40	4.1	40	88	4	197	21	23	28	26	1.99
49913427--49913684	40	6.5	40	92	1	403	22	22	28	26	1.99
49922429--49922589	40	4.1	40	93	0	270	21	21	31	26	1.98
49922831--49922874	22	2.0	22	82	8	54	31	11	13	43	1.80
49928121--49928182	31	2.0	32	87	3	90	35	19	24	20	1.96
49928199--49928249	27	1.9	26	88	4	75	31	19	31	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49928127--49928262	67	2.0	68	85	5	184	29	19	29	21	1.98
49933234--49933268	12	2.9	12	91	0	52	5	20	2	71	1.19
49935584--49935666	43	1.9	43	87	0	121	30	30	18	21	1.97
49935601--49935699	42	2.3	43	85	1	128	32	33	18	16	1.93
49938443--49938483	5	8.0	5	89	5	64	41	0	19	39	1.52
49939440--49939495	26	2.2	26	83	0	67	60	16	3	19	1.49
49943024--49943077	25	2.2	25	100	0	108	35	20	25	18	1.95
49946048--49946077	15	2.0	15	93	0	51	23	0	30	46	1.52
49946096--49946163	25	2.7	25	77	8	84	35	13	29	22	1.92
49954553--49954682	45	2.9	45	91	2	208	28	28	21	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333