Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  332  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107908440--107908532
46
1.9
48
81
12
111
38
8
12
39
1.74
107933375--107933413
19
2.0
21
90
10
64
35
15
17
30
1.91
107934923--107934953
15
2.1
15
93
0
53
25
0
16
58
1.38
107947557--107947604
22
2.3
20
82
10
60
70
4
4
20
1.21
107947557--107947605
21
2.3
22
86
6
66
71
4
4
20
1.19
107954940--107955707
125
6.1
126
87
2
1073
36
16
17
29
1.92
107958654--107958683
9
3.4
9
90
9
53
63
0
0
36
0.95
107958665--107958945
136
2.0
138
92
2
467
53
6
3
37
1.42
107959329--107959372
18
2.4
18
80
0
52
47
9
22
20
1.78
107961602--107961699
49
2.0
49
91
0
160
26
10
18
44
1.81
107961668--107961817
63
2.4
64
89
3
225
31
11
16
40
1.84
107992700--107992739
17
2.3
18
87
8
57
37
0
0
62
0.95
107999017--107999052
13
2.8
14
84
16
51
27
25
0
47
1.52
107999004--107999044
18
2.2
19
87
12
59
29
24
0
46
1.53
107999541--107999579
18
2.1
19
90
4
62
48
10
0
41
1.37
108000901--108000957
5
11.0
5
78
14
62
56
1
0
42
1.10
108000900--108000955
12
4.5
12
81
16
69
55
1
0
42
1.10
108000902--108000957
26
2.2
26
90
6
69
55
1
0
42
1.10
108004711--108005079
188
2.0
189
86
3
530
21
11
22
43
1.84
108004939--108005252
158
2.0
158
87
2
452
23
12
21
43
1.85
108011917--108012000
31
2.8
31
89
3
127
23
11
10
53
1.69
108017289--108017320
15
2.0
17
88
11
50
6
18
3
71
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108020654--108020730
9
8.2
9
83
8
100
41
22
11
24
1.87
108020742--108020804
20
3.0
20
86
9
74
23
3
0
73
0.98
108020749--108020796
6
7.5
6
84
11
60
20
2
0
77
0.88
108020748--108020794
14
3.5
14
82
11
71
21
2
0
76
0.89
108020749--108020819
32
2.2
31
82
9
81
23
2
1
71
1.07
108022463--108022575
54
2.1
54
95
3
203
23
3
15
56
1.55
108025832--108025861
7
4.1
7
91
8
51
26
0
13
60
1.34
108025832--108025861
15
2.1
15
93
6
53
26
0
13
60
1.34
108028594--108028628
16
2.2
16
89
0
52
37
11
8
42
1.72
108042657--108043031
106
3.5
106
80
2
412
33
17
18
30
1.94
108053034--108053116
31
2.7
31
92
1
132
34
9
9
45
1.70
108055802--108055860
29
2.0
31
80
12
70
44
8
1
45
1.44
108079236--108079272
19
2.0
18
89
5
56
56
0
2
40
1.13
108107091--108107138
25
1.9
25
91
0
78
37
8
16
37
1.79
108107090--108107146
25
2.2
25
81
3
69
38
7
15
38
1.75
108109717--108109746
13
2.3
13
94
0
51
53
13
3
30
1.56
108126666--108126713
4
12.0
4
86
0
69
27
4
22
45
1.70
108130892--108130935
15
3.1
15
87
9
58
25
45
0
29
1.54
108133468--108133509
21
2.0
21
100
0
84
38
19
4
38
1.73
108141052--108141111
30
2.0
29
87
3
84
40
6
10
43
1.64
108141708--108141763
25
2.3
24
84
3
67
41
1
10
46
1.49
108148800--108149061
109
2.4
109
94
0
463
37
7
14
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108151032--108151105
16
4.6
16
79
5
78
41
4
21
32
1.72
108151033--108151110
32
2.4
34
80
8
99
43
3
20
32
1.70
108151320--108151363
21
2.0
21
86
8
61
61
2
0
36
1.09
108158415--108158474
30
2.1
27
84
9
75
50
1
3
45
1.28
108159047--108159109
31
2.0
31
84
0
81
38
4
11
46
1.61
108166445--108166608
42
3.7
42
85
8
195
28
27
15
28
1.96
108166515--108166698
49
3.8
49
80
7
182
30
25
14
29
1.94
108166720--108166868
31
4.8
31
88
0
217
26
27
19
26
1.99
108166848--108166972
50
2.5
51
90
2
198
25
24
15
35
1.94
108170485--108170512
12
2.3
12
100
0
56
25
7
0
67
1.15
108172098--108172137
20
2.0
20
85
0
53
35
10
5
50
1.58
108179193--108179238
12
3.8
12
85
0
56
43
19
8
28
1.80
108189304--108189355
20
2.5
20
84
3
68
26
17
5
50
1.69
108190080--108190126
15
3.3
14
80
11
51
31
6
0
61
1.21
108196912--108196976
32
2.0
32
96
0
121
47
6
10
35
1.63
108203260--108203372
54
2.1
53
82
8
131
37
11
6
45
1.66
108217674--108218395
357
2.0
357
99
0
1417
34
19
12
33
1.89
108236087--108236126
20
2.0
20
90
5
62
32
0
2
65
1.06
108236085--108236142
11
5.4
11
74
16
50
37
0
1
60
1.07
108239896--108240086
99
1.9
99
98
0
373
24
24
20
30
1.99
108244680--108244792
33
3.4
33
81
4
113
54
8
31
4
1.51
108250125--108250174
18
2.8
18
78
0
55
16
34
26
24
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108253124--108253221
49
2.0
49
87
0
142
14
18
6
61
1.53
108260152--108260181
15
2.0
15
93
0
51
23
0
16
60
1.36
108264457--108264518
31
2.0
31
96
0
115
41
11
6
40
1.66
108268712--108268758
21
2.2
22
88
3
69
21
36
19
23
1.95
108272655--108272692
13
3.2
12
92
7
60
68
2
0
28
1.03
108275782--108275831
26
1.9
26
88
8
75
62
6
6
26
1.42
108276454--108276493
21
2.0
21
85
5
55
47
0
10
42
1.37
108285336--108285375
21
2.0
20
90
5
62
40
5
7
47
1.54
108287519--108287562
21
2.0
21
86
8
61
36
0
2
61
1.09
108294474--108294543
35
2.0
35
100
0
140
28
11
20
40
1.87
108302157--108302229
35
2.1
35
94
0
128
42
17
4
35
1.69
108306571--108306723
79
1.9
79
91
0
252
35
8
12
43
1.73
108307121--108307166
19
2.4
19
79
13
58
36
2
8
52
1.45
108311208--108311248
21
2.0
21
90
0
64
19
29
21
29
1.98
108314902--108316560
200
8.4
200
93
3
2799
40
14
28
16
1.88
108315233--108316560
383
3.4
384
95
2
2289
39
14
27
17
1.89
108316216--108316560
184
1.9
186
93
1
604
39
14
27
17
1.89
108321017--108321047
15
2.1
15
100
0
62
38
25
12
22
1.90
108321056--108321097
20
2.1
20
90
0
66
30
16
11
40
1.85
108324463--108324497
18
1.9
18
88
0
52
20
20
28
31
1.97
108325740--108325770
15
2.1
15
100
0
62
38
25
12
22
1.90
108325779--108325820
20
2.1
20
90
0
66
30
16
11
40
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108326239--108326267
15
1.9
15
100
0
58
68
6
6
17
1.34
108330929--108330994
29
2.2
28
82
12
71
48
4
12
34
1.61
108330946--108331004
29
2.0
29
83
3
73
49
5
10
35
1.59
108331106--108331291
59
3.1
56
69
19
144
43
2
3
51
1.32
108331152--108331339
61
3.1
61
68
17
165
43
2
5
48
1.41
108331099--108331389
120
2.4
122
88
4
453
44
2
4
49
1.34
108331333--108331369
19
2.0
19
85
15
51
45
0
0
54
1.00
108331534--108331624
45
2.0
45
85
2
121
37
28
6
27
1.82
108331605--108331673
16
4.2
16
96
3
129
37
37
0
24
1.56
108331605--108331673
33
2.1
32
97
2
129
37
37
0
24
1.56
108332730--108332768
19
2.0
20
85
14
55
28
5
7
58
1.47
108335425--108335474
25
2.0
24
85
11
66
38
0
0
62
0.96
108335705--108335744
19
2.1
20
90
9
66
50
5
17
27
1.67
108348572--108348628
18
3.2
18
92
0
96
31
17
24
26
1.97
108350565--108350595
15
2.0
16
93
6
55
51
0
0
48
1.00
108364604--108364818
107
2.0
108
98
0
414
43
5
8
42
1.58
108371422--108371564
52
2.8
52
97
0
268
30
18
18
32
1.95
108371534--108371579
24
2.0
23
88
12
69
21
17
21
39
1.93
108372065--108372120
5
11.2
5
100
0
112
39
0
0
60
0.97
108379970--108380026
18
3.2
18
97
0
105
33
17
22
26
1.96
108384456--108384518
20
3.3
20
68
17
53
42
11
19
26
1.84
108387298--108387338
21
2.0
21
85
0
55
29
24
26
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108409133--108409173
21
2.0
21
90
0
64
19
29
21
29
1.98
108413251--108413276
13
2.0
13
100
0
52
30
0
7
61
1.24
108415390--108415416
3
9.0
3
100
0
54
33
0
0
66
0.92
108417274--108417366
18
5.2
18
88
0
141
27
23
15
33
1.95
108425259--108425389
65
2.0
65
100
0
262
32
15
24
27
1.95
108427870--108427904
16
2.2
17
90
10
56
65
0
8
25
1.21
108434488--108434542
26
2.1
26
100
0
110
43
10
18
27
1.83
108442242--108442615
186
2.0
187
99
0
741
43
16
5
34
1.72
108446554--108446633
39
2.0
40
95
2
144
36
11
22
30
1.89
108449309--108449386
41
2.0
40
90
10
124
55
21
5
17
1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333