genome.fa.s3.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  126  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40682870--40683008	28	5.0	27	90	2	136	28	11	26	33	1.91
40690518--40690639	28	4.4	28	94	1	201	25	12	28	33	1.92
40692841--40693025	79	2.3	82	84	7	238	24	27	23	24	2.00
40692822--40693028	40	5.2	40	81	8	226	24	26	22	26	2.00
40695687--40695744	27	2.1	27	96	0	107	31	17	17	34	1.93
40702806--40702923	43	2.8	42	83	6	150	22	16	28	31	1.96
40712271--40712407	40	3.4	40	84	0	175	35	26	16	22	1.95
40715169--40715214	24	1.9	24	82	8	58	30	30	15	23	1.95
40721417--40721478	28	2.2	28	91	0	97	33	27	8	30	1.86
40721586--40721675	27	3.2	27	82	7	110	17	24	25	32	1.97
40721596--40721686	27	3.2	28	80	13	89	19	26	21	31	1.98
40722767--40722800	10	3.3	10	84	8	50	29	8	8	52	1.62
40727721--40727944	39	5.6	39	81	6	211	25	27	21	25	1.99
40727749--40727944	79	2.5	79	80	5	200	25	26	21	26	1.99
40732825--40732912	27	3.2	27	84	7	108	19	23	23	32	1.97
40743318--40743348	16	2.0	15	93	6	53	67	0	0	32	0.91
40755815--40755868	18	3.0	18	100	0	108	33	22	11	33	1.89
40760787--40760903	43	2.7	43	81	5	137	28	22	17	32	1.96
40760654--40760939	146	2.0	144	83	5	362	29	22	17	31	1.96
40766971--40767003	16	2.0	17	88	5	50	45	9	9	36	1.68
40770159--40770199	18	2.3	18	91	0	73	24	36	0	39	1.56
40770173--40770256	30	2.8	30	96	0	150	23	42	0	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40770310--40770365	19	3.3	19	62	27	52	21	39	0	39	1.54
40770305--40770375	32	2.2	32	100	0	142	23	32	0	43	1.54
40779720--40779902	79	2.3	81	82	9	207	23	27	23	25	2.00
40779699--40779902	40	5.1	39	79	10	209	23	27	23	25	2.00
40781031--40781205	56	3.1	55	97	2	332	22	22	9	45	1.81
40787009--40787180	40	4.3	39	86	5	220	26	28	20	25	1.99
40787009--40787233	40	5.6	39	81	7	215	25	27	21	25	1.99
40787009--40787233	79	2.8	78	81	5	218	25	27	21	25	1.99
40787011--40787231	119	1.9	120	82	6	288	25	27	21	25	1.99
40788360--40788478	55	2.1	56	98	1	231	22	24	9	43	1.82
40790614--40790638	13	1.9	13	100	0	50	16	4	16	64	1.44
40791341--40791757	46	8.8	47	70	17	176	26	18	30	24	1.98
40798112--40798136	13	1.9	13	100	0	50	16	4	16	64	1.44
40798845--40799155	46	6.6	46	76	12	219	26	19	31	22	1.98
40800549--40800811	40	6.6	40	87	3	316	24	20	28	26	1.99
40807852--40808114	40	6.6	40	86	3	307	24	20	27	26	1.99
40807891--40808149	80	3.3	80	86	2	254	25	20	27	25	1.99
40809915--40809969	28	1.9	28	85	10	76	14	21	45	18	1.85
40815182--40815360	85	2.1	85	100	0	358	37	8	27	26	1.85
40816529--40816712	40	4.6	41	82	9	222	23	22	28	25	1.99
40816529--40816710	79	2.3	80	83	6	219	24	22	28	25	2.00
40816582--40816745	79	2.1	78	84	5	206	25	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40821787--40821937	40	3.8	40	85	4	173	25	27	21	25	1.99
40821806--40821990	40	4.7	40	83	6	216	25	27	22	24	2.00
40821806--40821990	79	2.3	80	80	8	207	25	27	22	24	2.00
40823117--40823291	56	3.1	56	99	0	343	22	23	9	44	1.81
40829786--40829969	40	4.7	40	84	7	225	25	27	22	23	2.00
40829788--40829969	79	2.3	79	83	6	217	25	27	23	24	2.00
40831097--40831272	56	3.1	56	99	0	343	22	23	9	44	1.81
40833803--40833981	85	2.1	85	100	0	358	37	8	27	26	1.85
40835145--40835323	79	2.2	80	83	7	222	24	22	28	24	2.00
40835146--40835329	40	4.6	39	82	9	203	24	22	28	25	1.99
40835198--40835362	79	2.1	79	83	6	201	26	20	27	25	1.99
40837985--40838178	47	4.1	47	90	0	280	32	10	29	26	1.90
40838032--40838110	25	3.3	25	65	22	69	30	10	30	29	1.90
40838014--40838085	22	3.1	22	64	24	58	31	13	30	23	1.94
40838059--40838134	23	3.2	25	62	24	63	28	13	34	23	1.92
40838149--40838284	50	2.8	48	86	8	211	36	7	26	30	1.84
40838143--40838305	50	3.3	50	80	14	201	33	7	28	30	1.86
40838430--40838538	37	2.9	37	95	0	191	22	19	31	26	1.98
40840668--40840737	27	2.6	27	95	2	113	31	28	12	27	1.93
40840668--40840762	28	3.4	28	89	2	129	32	28	12	26	1.93
40848684--40848753	27	2.6	27	95	2	113	31	28	12	27	1.93
40848684--40848778	28	3.4	28	89	2	129	32	28	12	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40850672--40850823	27	5.6	27	92	3	223	30	28	13	27	1.94
40850672--40850848	55	3.2	55	88	0	237	31	28	13	26	1.94
40858613--40858756	28	5.2	27	90	4	198	31	28	13	27	1.94
40858613--40858756	55	2.6	55	89	1	207	31	28	13	27	1.94
40865103--40865259	29	5.5	29	88	3	212	33	26	11	29	1.91
40865103--40865259	57	2.7	58	88	3	212	33	26	11	29	1.91
40868091--40868244	42	3.7	42	81	6	159	31	24	14	28	1.95
40872787--40872822	17	2.1	18	89	5	56	16	30	41	11	1.83
40886908--40886982	30	2.6	28	76	4	78	42	10	25	21	1.85
40886964--40887158	30	6.5	30	75	9	164	35	10	26	27	1.89
40886963--40887158	60	3.3	61	77	11	197	35	10	26	27	1.89
40886994--40887172	90	2.0	90	80	2	198	36	11	25	26	1.90
40894675--40895274	47	12.6	47	93	2	986	33	8	29	29	1.86
40894675--40895274	143	4.2	141	95	1	986	33	8	29	29	1.86
40895393--40895530	37	3.8	36	92	2	222	23	19	31	24	1.98
40895393--40895530	73	1.9	73	93	0	240	23	19	31	24	1.98
40896800--40897471	40	16.8	40	92	0	1074	25	21	27	25	1.99
40901190--40901599	47	8.6	47	92	1	667	32	8	30	29	1.86
40901718--40901862	37	3.9	37	93	0	236	22	20	31	24	1.98
40902860--40903032	46	3.7	46	77	11	183	23	20	26	30	1.98
40902857--40903027	93	1.8	93	89	2	272	22	20	27	29	1.99
40903257--40903294	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40905005--40905050	19	2.4	19	76	20	51	65	8	2	23	1.32
40909687--40910056	50	7.6	50	77	7	293	21	29	20	28	1.98
40909687--40910067	95	3.9	96	78	10	350	22	28	19	29	1.98
40909686--40910054	145	2.5	145	77	7	381	21	28	20	29	1.98
40912213--40912480	48	5.6	48	76	7	195	27	27	19	26	1.99
40917494--40917544	20	2.7	19	82	14	54	41	0	21	37	1.54
40917689--40917721	17	1.9	17	88	11	50	48	0	15	36	1.45
40918750--40918825	13	5.9	13	79	3	82	30	6	27	35	1.82
40923323--40923348	7	3.7	7	100	0	52	15	53	0	30	1.42
40931383--40931419	17	2.2	17	90	4	58	59	5	5	29	1.42
40932436--40932519	27	3.1	27	85	0	105	32	25	9	33	1.88
40932526--40932604	28	2.9	28	88	1	115	40	21	7	30	1.81
40932532--40932632	28	3.6	28	84	4	89	41	22	7	27	1.82
40932628--40932731	27	3.9	27	84	3	140	28	20	9	41	1.84
40932751--40932902	27	5.7	26	75	10	119	40	21	8	29	1.83
40932526--40932901	54	6.9	54	69	10	160	37	21	9	32	1.85
40932922--40932995	27	2.7	27	76	12	71	37	20	20	21	1.94
40933787--40933961	26	6.8	26	92	0	264	27	22	22	28	1.99
40934106--40934197	42	2.2	42	92	3	150	29	13	22	34	1.92
40934212--40934304	31	3.0	31	92	3	143	31	16	22	30	1.95
40936699--40936921	40	5.6	39	86	3	250	26	27	20	25	1.99
40936699--40936921	120	1.9	119	82	4	279	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40944586--40944754	40	4.3	40	87	2	216	24	29	21	24	1.99
40974789--40974869	40	2.0	41	88	7	121	24	22	25	27	2.00
40982337--40982384	25	1.9	25	86	0	69	37	10	14	37	1.81
40982336--40982395	25	2.3	26	80	11	68	38	11	15	35	1.83
40996581--40997213	318	2.0	315	96	0	1158	28	20	21	29	1.98
41003399--41003538	48	2.9	49	83	9	189	23	29	20	27	1.99
41005941--41006117	6	28.8	6	74	16	141	48	14	18	18	1.81
41005936--41006117	37	4.9	37	78	11	146	48	14	18	18	1.81
41005941--41006117	25	7.2	24	77	11	141	48	14	18	18	1.81
41005946--41006117	31	5.6	31	74	14	167	48	15	18	18	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333