genome.fa.s3.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  147  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48181838--48181921	29	3.0	28	79	10	98	28	14	29	27	1.95
48184947--48185121	46	3.8	46	76	13	196	29	29	20	21	1.98
48184954--48185125	93	1.8	93	93	0	299	28	29	20	21	1.98
48192525--48192696	93	1.8	93	91	0	281	29	28	20	21	1.98
48192518--48192693	46	3.8	46	76	12	180	30	28	19	21	1.98
48192569--48192712	46	3.1	44	75	15	132	29	28	19	22	1.98
48200417--48200514	46	2.1	46	90	0	151	28	28	18	24	1.98
48201345--48201386	23	1.9	21	90	9	66	23	11	11	52	1.71
48204925--48205146	40	5.6	40	91	1	340	28	25	22	23	1.99
48222546--48222768	79	2.8	78	82	9	265	24	27	22	25	2.00
48222546--48222768	39	5.7	40	86	8	266	24	27	22	25	2.00
48230488--48230749	39	6.7	40	87	7	328	24	27	22	25	2.00
48232493--48232622	49	2.6	52	83	6	176	38	13	13	33	1.85
48246942--48247117	46	3.8	44	76	10	165	22	19	28	29	1.98
48246938--48247109	93	1.8	93	88	0	263	22	19	29	28	1.98
48250061--48250129	15	4.6	15	79	0	75	11	15	13	59	1.61
48250052--48250139	30	3.0	30	78	8	90	10	15	15	57	1.64
48252526--48252701	46	3.8	45	79	10	194	21	20	30	28	1.98
48252522--48252693	93	1.8	93	92	0	290	20	20	30	27	1.98
48255019--48255290	30	9.4	30	83	13	356	48	13	17	20	1.81
48255019--48255290	85	3.2	85	97	0	499	48	13	17	20	1.81
48255019--48255265	6	40.8	6	76	15	233	48	13	17	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48255408--48255494	27	3.3	26	88	4	102	35	24	22	17	1.95
48255693--48255884	27	7.3	27	77	4	194	26	19	18	35	1.95
48255694--48255884	53	3.6	53	78	6	201	26	19	17	35	1.95
48255889--48256162	27	10.2	27	81	3	311	41	9	21	27	1.84
48255889--48256162	81	3.4	81	84	5	358	41	9	21	27	1.84
48258178--48258364	85	2.2	85	94	0	320	49	13	16	20	1.80
48258178--48258339	6	26.8	6	73	15	138	49	14	16	20	1.79
48258482--48258561	27	3.0	26	87	5	106	35	22	23	18	1.96
48258767--48258962	27	7.3	27	84	0	230	26	19	18	35	1.95
48258767--48258962	54	3.6	54	86	0	266	26	19	18	35	1.95
48258786--48258962	81	2.2	81	87	2	257	24	18	19	36	1.94
48258967--48259216	27	9.3	27	81	6	274	41	9	22	26	1.84
48258967--48259213	81	3.0	81	88	4	320	41	9	21	27	1.84
48261649--48261705	26	2.2	26	80	3	60	29	19	15	35	1.93
48270665--48270799	52	2.8	46	78	12	153	21	19	29	29	1.97
48272582--48272638	26	2.2	26	80	3	60	29	19	15	35	1.93
48272926--48272964	21	1.9	21	89	5	62	23	28	20	28	1.99
48275255--48275438	40	4.6	40	84	4	192	25	21	27	25	2.00
48275255--48275438	80	2.3	81	82	3	212	25	21	27	25	2.00
48283118--48283301	40	4.6	40	84	4	192	25	21	27	25	2.00
48283118--48283301	80	2.3	81	82	3	212	25	21	27	25	2.00
48288434--48288554	43	2.8	43	85	5	138	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48290036--48291180	48	23.9	48	93	1	1865	30	27	6	35	1.81
48294641--48294788	40	3.7	40	82	3	163	25	12	26	35	1.92
48297760--48297887	48	2.7	46	84	8	177	27	29	17	25	1.98
48297763--48297919	48	3.3	46	84	6	172	25	30	18	25	1.98
48301703--48301754	16	3.3	16	86	2	70	50	23	19	7	1.73
48301704--48301755	8	6.6	8	76	10	54	50	21	21	7	1.73
48301973--48302087	28	4.1	28	78	6	106	27	17	30	24	1.97
48301978--48302087	57	1.9	57	84	0	148	28	17	30	24	1.97
48313917--48314001	27	3.2	26	86	5	98	36	22	22	18	1.95
48316762--48316875	28	4.0	28	83	6	140	29	15	26	28	1.96
48319065--48319237	27	6.4	27	86	0	220	34	20	21	23	1.97
48319066--48319219	81	1.9	81	90	0	245	35	21	20	22	1.96
48321534--48321718	40	4.7	40	81	5	207	24	22	27	25	2.00
48321571--48321741	79	2.2	78	80	8	193	26	21	25	26	1.99
48329288--48329472	40	4.6	41	82	7	222	23	22	28	25	1.99
48329341--48329505	79	2.1	79	83	6	201	25	20	27	26	1.99
48339753--48339821	26	2.6	26	83	2	84	34	21	26	17	1.95
48339980--48340044	22	3.0	22	75	8	60	35	23	20	21	1.96
48340471--48340719	27	9.3	27	88	0	356	24	20	21	33	1.97
48340496--48340749	81	3.1	81	77	7	264	25	19	22	33	1.97
48340756--48340987	27	8.6	27	81	3	252	31	9	21	37	1.87
48340715--48340938	81	2.8	81	80	4	184	31	9	21	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48344398--48344596	38	5.2	38	85	2	229	34	24	19	22	1.97
48350495--48350672	45	4.0	45	89	0	275	21	21	28	28	1.99
48350649--48350747	41	2.4	42	79	6	112	28	21	28	22	1.99
48356861--48356988	49	2.6	49	81	2	141	28	21	26	22	1.99
48360789--48361223	47	9.1	47	88	4	645	31	9	31	28	1.88
48360792--48361223	96	4.5	96	97	0	729	31	9	31	28	1.88
48363248--48363436	43	4.4	43	97	0	360	23	14	34	26	1.94
48363418--48363491	29	2.6	29	84	4	96	25	16	31	27	1.96
48363802--48364022	40	5.5	40	81	4	234	24	23	27	23	2.00
48366867--48367301	47	9.1	47	88	4	636	31	9	30	28	1.88
48366870--48367301	96	4.5	96	97	0	720	31	9	31	28	1.88
48369320--48369508	43	4.4	43	97	0	360	23	14	34	26	1.94
48369490--48369563	29	2.6	29	84	4	96	25	16	31	27	1.96
48369874--48370094	40	5.5	40	81	4	234	24	23	27	23	2.00
48372941--48373424	49	10.1	49	88	3	727	30	9	30	28	1.88
48372941--48373424	96	5.0	96	95	1	783	30	9	30	28	1.88
48376187--48376248	26	2.3	27	83	8	74	50	9	11	29	1.70
48377123--48377192	32	2.2	33	92	5	124	34	14	10	41	1.79
48382198--48382375	27	6.6	26	80	6	169	26	16	28	28	1.97
48382199--48382354	82	1.9	81	86	3	224	26	16	28	28	1.97
48382195--48382375	82	2.2	81	82	2	220	27	16	28	28	1.97
48382280--48382386	27	3.9	27	81	1	79	26	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48386680--48386737	30	2.0	30	83	10	75	34	20	5	39	1.75
48388526--48388897	125	3.0	124	83	4	460	29	18	12	39	1.88
48388993--48389106	31	3.7	31	80	6	99	39	17	1	41	1.60
48389017--48389105	31	3.0	30	85	6	119	39	15	2	42	1.60
48390073--48390169	48	2.0	48	100	0	194	46	28	6	18	1.73
48391855--48391879	13	1.9	13	100	0	50	8	40	20	32	1.81
48395633--48395664	9	3.7	9	95	4	57	50	28	0	21	1.49
48402789--48402819	14	2.2	14	100	0	62	51	6	0	41	1.27
48403266--48403364	27	3.5	28	90	2	137	27	13	28	31	1.94
48403294--48403376	27	3.0	28	85	5	107	31	12	24	32	1.91
48416410--48416638	50	4.6	50	82	1	244	24	16	27	31	1.96
48423207--48423450	50	4.9	50	76	5	226	26	18	24	30	1.98
48427361--48427412	26	2.0	26	100	0	104	42	23	19	15	1.89
48429792--48429848	23	2.5	23	94	2	98	35	1	3	59	1.25
48430132--48430192	13	4.7	13	72	8	52	37	24	6	31	1.81
48430127--48430192	26	2.5	26	80	0	78	36	24	6	33	1.80
48434128--48434165	20	1.9	20	88	0	58	55	0	23	21	1.44
48445153--48445198	19	2.4	19	88	0	74	19	10	30	39	1.86
48449579--48449616	12	3.2	12	92	0	58	21	44	0	34	1.52
48462213--48462397	40	4.6	40	93	1	293	22	22	28	27	1.99
48462209--48462429	80	2.8	79	85	7	286	25	21	26	26	1.99
48462656--48462699	22	2.0	21	83	16	54	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468249--48468400	40	3.8	40	89	2	207	25	28	21	24	1.99
48475975--48476126	40	3.8	40	85	2	198	25	28	21	24	1.99
48480643--48480874	40	5.8	40	93	1	360	24	22	26	25	2.00
48492097--48492140	20	2.2	20	100	0	88	29	4	22	43	1.73
48495135--48495199	30	2.2	30	91	0	103	23	30	24	21	1.99
48505174--48505232	5	11.2	5	77	22	59	18	5	0	76	0.97
48505174--48505219	15	3.1	14	87	12	65	19	4	0	76	0.96
48505174--48505231	20	2.8	21	86	7	82	18	5	0	75	0.98
48505174--48505231	30	2.0	30	83	9	77	18	5	0	75	0.98
48513597--48513637	21	2.0	21	100	0	82	39	24	17	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333