Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  140  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45847348--45847524
94
1.9
94
88
2
266
22
29
18
29
1.98
45848068--45848096
4
7.2
4
100
0
58
75
0
24
0
0.80
45850345--45850402
30
1.9
30
85
0
80
27
25
12
34
1.91
45856213--45856515
67
4.5
67
78
6
292
35
15
20
27
1.93
45857630--45857668
17
2.3
17
86
0
51
25
30
17
25
1.97
45857912--45857985
34
2.2
34
90
2
114
33
9
20
36
1.85
45860377--45860427
25
2.0
27
84
7
70
50
1
9
37
1.47
45865183--45865360
27
6.6
27
83
5
180
28
28
15
26
1.96
45865204--45865359
82
1.9
81
85
6
217
28
28
16
26
1.97
45867273--45867445
46
3.7
45
75
13
172
20
19
27
32
1.97
45867270--45867440
93
1.8
93
88
5
265
20
19
28
31
1.97
45867670--45867707
19
2.0
20
85
15
53
36
0
23
39
1.55
45874114--45874283
47
3.6
47
90
1
250
32
8
30
28
1.86
45875707--45875852
43
3.4
43
98
0
283
22
14
36
26
1.93
45875834--45875907
29
2.6
29
89
4
105
25
16
32
25
1.96
45876216--45876451
40
5.9
40
78
4
183
24
21
28
25
1.99
45880715--45880931
47
4.6
47
92
1
335
32
7
30
29
1.86
45885753--45885925
46
3.7
46
79
10
208
21
20
27
29
1.98
45885750--45885920
93
1.8
93
93
0
297
21
21
28
28
1.98
45886150--45886187
19
2.0
20
85
15
53
36
0
23
39
1.55
45908852--45908903
27
2.0
26
84
3
68
34
21
26
17
1.95
45913223--45913272
25
2.0
25
100
0
100
44
0
16
40
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45913228--45913274
19
2.5
19
70
16
53
48
0
14
36
1.44
45913226--45913289
25
2.6
25
87
2
85
51
0
14
34
1.42
45914664--45914701
19
2.0
20
84
5
51
28
0
2
68
1.03
45914678--45914725
24
2.0
24
88
8
71
33
0
8
58
1.28
45932371--45932432
29
2.0
31
81
9
74
33
6
20
38
1.79
45940538--45940754
46
4.7
46
75
10
151
23
29
18
28
1.98
45941995--45942092
42
2.3
43
85
1
126
18
18
31
31
1.95
45943673--45943709
19
1.9
19
88
0
56
18
21
43
16
1.88
45944800--45944853
27
2.0
28
85
10
76
27
9
27
35
1.87
45955631--45955656
10
2.6
10
100
0
52
34
0
23
42
1.54
45961062--45961181
43
2.8
42
80
7
143
30
16
25
26
1.97
45961307--45961344
19
2.0
19
100
0
76
42
5
10
42
1.62
45961994--45962029
19
1.9
19
88
5
56
30
19
8
41
1.81
45963292--45963382
29
3.2
29
81
6
107
28
34
14
23
1.93
45968043--45968125
40
2.1
40
90
0
130
30
18
21
30
1.97
45968059--45968195
40
3.4
40
80
7
127
26
19
24
29
1.99
45976183--45976265
40
2.1
40
88
0
121
28
16
21
32
1.96
45976195--45976315
40
3.0
40
82
7
113
27
14
25
32
1.95
45978484--45978543
24
2.5
24
91
0
93
21
46
5
26
1.72
45979018--45979102
29
3.0
29
77
13
88
27
31
15
25
1.95
45979204--45979251
20
2.4
20
100
0
96
25
31
29
14
1.95
45986707--45986770
18
3.6
18
87
4
85
37
12
12
37
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45986701--45986770
17
3.8
19
81
11
92
37
11
14
37
1.82
45986762--45986806
21
2.0
23
83
8
58
37
4
13
44
1.64
45988205--45988229
12
2.1
12
100
0
50
40
0
16
44
1.47
45992435--45992489
7
7.9
7
79
20
62
83
0
16
0
0.64
45992444--45992488
6
7.8
6
76
18
51
84
0
15
0
0.62
45992435--45992489
21
2.6
21
88
8
85
83
0
16
0
0.64
45992433--45992482
16
3.4
15
81
10
59
84
0
16
0
0.63
45992444--45992488
13
3.4
13
82
11
56
84
0
15
0
0.62
45993530--45993690
89
1.8
87
81
5
198
31
19
22
26
1.97
45993723--45994173
78
5.8
78
92
2
726
31
18
24
25
1.97
45995807--45995989
56
3.3
55
85
6
235
25
13
28
32
1.94
45995832--45996012
28
6.5
28
94
1
276
26
13
28
31
1.94
45997552--45997716
45
3.7
45
84
4
201
33
13
29
23
1.93
45998068--45998131
18
3.6
18
89
4
94
37
12
14
35
1.83
45998060--45998131
17
3.9
19
83
10
105
37
11
15
36
1.83
45999571--45999595
12
2.1
12
100
0
50
40
0
16
44
1.47
46001184--46001248
18
3.3
18
66
25
51
23
15
6
55
1.62
46004499--46004547
25
2.0
25
87
0
71
40
6
6
46
1.53
46010765--46011331
105
5.4
105
94
2
989
55
4
4
35
1.43
46010765--46011331
208
2.7
209
95
2
996
55
4
4
35
1.43
46014477--46014515
15
2.6
15
87
0
51
41
38
0
20
1.53
46014534--46014752
14
15.0
14
69
10
71
46
28
1
23
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46014534--46014717
7
25.6
7
73
7
82
45
28
1
23
1.62
46016732--46016778
21
2.2
21
92
0
76
6
10
42
40
1.65
46019043--46019150
26
4.2
26
91
0
180
33
7
23
36
1.83
46022744--46022834
45
2.0
45
100
0
182
36
6
19
37
1.78
46023396--46023431
18
2.0
18
100
0
72
38
5
22
33
1.77
46023985--46024089
44
2.4
44
84
3
124
20
21
26
30
1.98
46026134--46026187
24
2.3
24
77
3
56
25
1
3
68
1.16
46026849--46026883
18
2.0
18
88
5
54
37
0
0
62
0.95
46029873--46029930
16
3.7
15
70
17
55
15
0
32
51
1.44
46029932--46029972
16
2.6
16
84
0
55
17
0
31
51
1.46
46046145--46046191
24
2.0
24
87
8
69
29
27
4
38
1.76
46053105--46053149
22
2.1
21
83
4
54
60
4
0
35
1.17
46058067--46058270
27
7.5
26
85
3
192
26
15
28
28
1.96
46058067--46058270
54
3.8
53
81
6
221
26
15
28
28
1.96
46058067--46058270
109
1.9
108
85
3
284
26
15
28
28
1.96
46066127--46066330
27
7.5
26
85
3
192
26
15
28
28
1.96
46066127--46066330
54
3.8
53
81
6
221
26
15
28
28
1.96
46066127--46066330
109
1.9
108
85
3
284
26
15
28
28
1.96
46077409--46077448
20
2.0
20
100
0
80
45
10
10
35
1.71
46085580--46085638
21
2.8
22
80
7
61
22
0
8
69
1.15
46085609--46085658
26
2.0
24
88
7
73
30
0
6
64
1.18
46086538--46086594
18
3.1
18
75
14
55
64
1
7
26
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46086593--46086638
20
2.1
22
84
11
60
54
0
13
32
1.39
46089690--46089789
51
2.0
51
82
4
121
45
12
11
32
1.76
46089857--46089906
23
2.2
23
89
3
75
38
24
12
26
1.90
46090505--46090542
17
2.2
18
85
4
51
50
15
5
28
1.66
46090840--46090866
9
3.0
9
100
0
54
44
0
0
55
0.99
46090851--46090915
29
2.3
28
89
2
94
50
12
1
35
1.49
46090978--46091047
26
2.7
24
79
20
70
41
14
4
40
1.65
46091088--46091125
18
2.1
19
85
5
51
26
21
5
47
1.71
46097849--46097958
48
2.3
47
88
1
166
21
14
29
34
1.93
46097849--46097973
47
2.6
48
76
15
132
23
14
28
34
1.94
46104961--46105039
28
2.7
30
86
7
117
36
5
8
49
1.56
46104932--46105063
30
4.4
30
78
12
112
35
4
13
46
1.64
46107812--46108029
40
5.5
40
88
2
280
26
28
22
22
1.99
46115374--46116168
47
16.7
47
96
1
1367
32
8
29
29
1.87
46115446--46115521
22
3.3
22
64
10
62
30
10
31
27
1.90
46115395--46116168
239
3.3
237
95
1
1381
32
8
29
29
1.87
46115732--46115807
22
3.3
22
64
10
62
30
10
31
27
1.90
46115374--46116168
286
2.8
286
96
0
1443
32
8
29
29
1.87
46116287--46116365
37
2.1
37
90
0
122
24
18
31
25
1.98
46129464--46129565
47
2.2
47
94
0
177
22
22
27
27
1.99
46132749--46132786
19
2.0
19
100
0
76
31
15
26
26
1.96
46139076--46139124
25
2.0
25
88
8
73
36
16
8
38
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46139262--46139286
12
2.1
12
100
0
50
0
24
8
68
1.16
46141012--46141128
43
2.8
41
82
7
137
23
21
27
28
1.99
46148596--46148746
43
3.5
42
76
14
132
27
20
25
27
1.99
46148596--46148754
85
1.9
85
81
7
198
26
20
25
27
1.99
46154633--46154672
20
2.0
21
85
5
55
10
2
15
72
1.21
46156851--46157270
48
8.8
48
86
0
554
26
16
28
28
1.97
46158177--46158327
76
2.0
76
86
0
212
29
17
28
25
1.97
46164755--46165227
48
9.8
48
82
3
529
26
16
27
28
1.97
46169689--46169738
26
1.9
26
100
0
100
20
10
10
60
1.57
46171532--46171610
31
2.5
31
93
0
140
26
24
18
30
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333