Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  327  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106144711--106144974
74
3.5
74
82
13
317
32
16
20
30
1.94
106144995--106145022
14
2.0
14
100
0
56
14
21
7
57
1.61
106145028--106145293
72
3.6
72
82
8
318
31
15
21
31
1.94
106145009--106145293
78
3.8
75
85
5
364
31
15
20
32
1.94
106145446--106145587
72
2.0
73
91
1
232
21
15
23
38
1.92
106145583--106145807
73
3.1
72
81
4
245
30
16
21
32
1.95
106145579--106145778
73
2.8
71
83
2
247
31
15
21
32
1.94
106145798--106145832
14
2.5
14
95
0
61
17
14
8
60
1.58
106145651--106146145
162
3.0
162
86
3
656
26
16
21
34
1.95
106145438--106146180
240
3.2
228
81
10
751
27
16
22
33
1.95
106145813--106145974
73
2.2
74
89
2
245
24
17
22
35
1.95
106145962--106145989
14
2.0
14
100
0
56
14
21
7
57
1.61
106145887--106146145
76
3.1
87
82
10
265
27
16
20
35
1.94
106145976--106146180
76
2.7
75
91
4
317
30
16
20
32
1.94
106146890--106147061
29
5.8
29
88
2
254
26
48
3
21
1.66
106146890--106147061
58
2.9
58
93
2
299
26
48
3
21
1.66
106147613--106147751
25
5.5
25
72
12
97
33
6
4
56
1.45
106147536--106147758
52
4.5
52
73
15
161
34
5
4
56
1.42
106147601--106147702
27
3.7
28
73
12
77
32
5
3
57
1.41
106147732--106147787
19
2.8
20
75
8
60
32
7
5
55
1.50
106161526--106161699
69
2.5
70
85
5
212
28
14
22
33
1.94
106161703--106162321
69
8.8
70
89
6
873
30
16
19
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106161703--106162334
139
4.5
140
89
6
917
30
16
19
33
1.94
106161703--106163777
211
9.9
211
86
9
2675
30
16
19
33
1.94
106161789--106163552
139
12.8
128
80
14
1393
30
16
18
33
1.94
106162452--106163589
71
16.1
71
90
7
1726
30
17
18
33
1.94
106162342--106163777
283
5.1
280
89
8
1983
30
16
18
33
1.94
106163570--106163597
13
2.2
13
100
0
56
14
14
7
64
1.48
106163502--106163675
84
2.1
83
88
6
253
27
16
18
38
1.91
106163584--106163777
72
2.7
72
88
5
286
29
15
20
33
1.94
106163745--106163806
31
2.0
32
90
3
99
40
11
22
25
1.87
106164175--106164489
70
4.3
73
72
20
257
29
16
23
30
1.96
106165708--106165769
24
2.7
23
73
11
54
37
4
3
54
1.38
106165838--106165882
23
2.0
23
82
4
56
31
6
2
60
1.35
106166013--106166073
19
3.2
19
77
13
61
37
4
4
52
1.45
106168736--106168799
23
2.9
22
73
13
60
37
0
6
56
1.25
106176083--106176123
21
1.9
22
85
5
57
39
7
0
53
1.29
106180357--106180430
31
2.4
31
74
0
76
40
10
2
45
1.53
106186319--106186386
21
3.1
21
76
4
64
63
1
0
35
1.04
106186348--106186391
18
2.4
18
77
7
54
68
0
0
31
0.90
106190507--106190584
39
2.0
38
92
2
129
42
5
26
25
1.76
106190992--106191053
30
2.0
32
84
6
83
38
8
3
50
1.48
106191093--106191151
13
4.5
13
68
16
50
35
3
1
59
1.24
106191068--106191133
24
2.7
24
75
11
62
39
6
4
50
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106191660--106191685
9
2.9
9
100
0
52
11
11
7
69
1.37
106191843--106192859
506
2.0
506
97
0
1917
30
14
18
35
1.91
106200645--106200708
20
2.9
24
71
20
66
37
0
4
57
1.19
106202849--106203168
46
7.0
46
91
0
444
39
15
24
20
1.92
106204710--106204753
19
2.4
18
85
7
70
20
22
18
38
1.93
106208776--106209003
44
5.2
44
91
0
339
29
16
33
21
1.95
106209899--106209923
13
1.9
13
100
0
50
88
4
8
0
0.64
106210414--106210491
38
2.0
39
95
2
140
42
5
28
24
1.76
106232801--106232902
30
3.4
30
84
2
134
29
22
3
44
1.71
106233165--106233226
3
21.0
3
78
15
51
70
0
29
0
0.87
106233165--106233227
13
4.8
13
78
14
58
71
0
28
0
0.86
106233166--106233227
21
2.9
22
83
7
74
72
0
27
0
0.85
106233168--106233214
24
2.0
24
87
8
69
68
0
31
0
0.90
106233169--106233227
24
2.5
24
81
10
68
72
0
27
0
0.84
106233488--106233546
15
3.8
15
72
22
50
77
0
22
0
0.76
106233488--106233543
22
2.5
22
80
11
62
78
0
21
0
0.75
106233505--106233547
11
3.9
11
88
8
61
74
0
25
0
0.82
106233494--106233547
22
2.5
22
82
11
69
75
0
24
0
0.80
106233685--106233722
16
2.3
17
86
4
51
23
0
2
73
0.95
106233875--106234379
17
28.9
17
69
21
214
33
11
10
43
1.77
106233886--106233939
16
3.2
16
75
14
56
35
14
9
40
1.78
106233932--106234106
74
2.4
75
84
5
214
37
12
9
41
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106233898--106234379
35
13.7
35
71
15
193
34
11
10
43
1.76
106234371--106234411
20
2.0
20
85
0
55
48
7
0
43
1.30
106242410--106242464
22
2.4
22
84
9
65
34
5
5
54
1.46
106243576--106243627
19
2.9
18
76
23
56
23
1
5
69
1.20
106243723--106243756
15
2.3
15
94
0
59
14
14
11
58
1.63
106246988--106247041
11
4.6
11
82
11
56
87
1
7
3
0.74
106246986--106247058
25
3.0
22
80
11
74
82
6
6
4
0.95
106247496--106247545
7
7.6
7
75
20
54
84
0
12
4
0.76
106247483--106247545
26
2.5
24
82
9
81
82
1
11
4
0.88
106247483--106247545
32
2.0
32
90
6
101
82
1
11
4
0.88
106247484--106247546
6
10.2
6
82
16
67
82
1
12
3
0.86
106248590--106248786
46
4.4
46
64
16
142
25
20
22
30
1.98
106248483--106248862
134
2.8
134
91
0
607
26
21
22
28
1.99
106248870--106250036
44
26.5
45
76
6
1021
27
16
26
29
1.97
106248870--106249605
132
5.6
132
93
0
1195
28
16
25
29
1.96
106248870--106250028
219
5.3
220
83
4
1136
27
16
26
29
1.97
106250019--106250397
95
4.0
95
88
6
592
29
20
22
28
1.98
106249999--106250380
185
2.1
183
94
1
665
28
21
22
28
1.99
106250299--106250593
134
2.2
134
97
0
554
27
21
23
28
1.99
106252156--106252210
22
2.4
22
84
9
65
34
5
5
54
1.46
106253319--106253370
19
2.9
18
76
23
56
23
1
5
69
1.20
106253433--106253470
17
2.2
18
85
4
51
26
0
5
68
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106253467--106253500
15
2.3
15
94
0
59
14
14
11
58
1.63
106260992--106261025
17
2.0
17
88
11
52
29
2
0
67
1.05
106261056--106261099
18
2.3
20
81
18
58
31
15
0
52
1.44
106262153--106262987
192
4.3
192
98
0
1609
29
13
20
36
1.91
106262156--106262987
383
2.2
384
98
0
1603
29
13
20
36
1.91
106262827--106263145
123
2.6
123
94
1
548
26
14
21
36
1.92
106262904--106263109
54
3.5
54
67
17
160
27
14
21
36
1.92
106263129--106263162
16
2.1
17
88
5
52
17
11
5
64
1.45
106263068--106263479
192
2.2
182
82
10
491
26
17
18
37
1.93
106263068--106263317
91
2.8
87
83
9
285
26
18
19
35
1.95
106263423--106263640
54
4.1
55
87
8
315
29
16
16
37
1.91
106263910--106264011
30
3.4
31
83
5
122
29
22
3
44
1.71
106264279--106264340
11
5.2
12
76
18
58
74
0
24
1
0.91
106264306--106264340
18
1.9
18
88
11
54
82
0
17
0
0.66
106264416--106264454
15
2.6
14
84
8
51
84
12
2
0
0.72
106264428--106264472
22
2.1
22
83
4
56
77
15
6
0
0.96
106264605--106264669
10
6.1
10
79
13
67
80
0
20
0
0.72
106264605--106264671
11
6.2
11
74
20
52
79
0
20
0
0.74
106264610--106264671
22
2.8
22
82
7
81
79
0
20
0
0.74
106264810--106264847
16
2.3
17
86
4
51
23
0
2
73
0.95
106265000--106265466
17
26.8
17
70
14
204
32
11
11
43
1.78
106265011--106265064
16
3.2
16
75
14
56
35
16
9
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106265057--106265230
74
2.4
72
84
3
213
33
12
10
43
1.78
106265164--106265332
35
4.8
34
76
9
119
30
13
12
43
1.80
106265485--106265522
16
2.3
17
81
4
51
36
15
10
36
1.82
106266458--106266487
3
10.0
3
100
0
60
33
0
0
66
0.92
106271596--106271645
16
3.1
16
85
2
55
38
6
0
56
1.24
106271597--106271646
17
3.0
17
85
2
57
36
8
0
56
1.29
106275722--106275777
7
8.0
7
75
13
53
66
0
1
32
1.03
106278506--106278555
25
2.0
25
96
0
91
38
12
14
36
1.83
106283141--106283221
39
2.0
40
81
11
96
40
3
1
54
1.26
106283855--106283907
27
2.0
26
85
10
72
52
3
1
41
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333