Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  188  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61726089--61726179
28
3.2
28
87
4
121
21
23
21
32
1.98
61726632--61726673
18
2.3
18
83
0
57
26
2
4
66
1.23
61731002--61731038
6
6.2
6
87
0
56
78
2
2
16
0.98
61734227--61734386
80
2.0
80
93
0
275
40
20
10
28
1.85
61739109--61739313
106
1.9
106
95
0
374
37
8
15
38
1.79
61741403--61741742
45
7.6
45
88
2
461
24
20
27
27
1.99
61748508--61748560
21
2.5
21
82
14
65
49
1
0
49
1.12
61753647--61753681
6
5.8
6
96
0
61
51
0
11
37
1.38
61757699--61757746
23
2.1
23
100
0
96
22
12
25
39
1.89
61777806--61778101
50
5.9
50
76
2
252
26
17
26
30
1.97
61777857--61778038
101
1.8
101
90
0
292
28
19
24
28
1.98
61777826--61778133
150
2.0
151
82
6
365
25
17
27
29
1.97
61782208--61782368
43
3.7
44
77
10
145
31
24
18
26
1.98
61787483--61787570
30
2.9
30
78
6
88
29
25
17
28
1.97
61789944--61789982
21
1.9
21
94
5
71
23
30
35
10
1.88
61791030--61791251
46
4.8
47
81
7
242
24
21
30
22
1.99
61791030--61791251
96
2.4
92
81
6
252
24
21
30
22
1.99
61793463--61793593
46
2.8
46
86
4
183
23
29
21
25
1.99
61818402--61818442
18
2.3
19
83
12
59
65
0
0
34
0.93
61818392--61818501
36
2.9
34
69
26
85
60
0
1
37
1.14
61818394--61818479
43
2.0
43
84
8
113
62
0
2
34
1.08
61818466--61818503
19
2.0
20
89
5
60
57
2
0
39
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61818647--61818700
26
2.1
25
89
3
81
22
3
0
74
0.98
61818665--61818714
25
2.0
25
84
7
66
30
2
0
68
1.01
61818717--61818759
21
2.0
21
82
8
52
20
2
2
74
1.04
61818724--61818749
9
2.9
9
100
0
52
19
0
0
80
0.71
61822560--61822627
30
2.3
30
84
5
84
47
5
19
27
1.72
61824855--61824986
40
3.3
40
94
2
230
28
26
22
21
1.99
61826815--61826983
46
3.7
46
89
1
232
40
12
23
23
1.88
61828235--61828302
30
2.3
30
84
5
84
27
19
5
47
1.72
61828984--61829174
105
1.9
101
82
8
242
25
26
16
31
1.96
61829716--61829744
14
2.1
14
100
0
58
20
6
6
65
1.40
61829992--61830072
39
2.1
39
100
0
162
29
7
24
38
1.83
61836130--61836170
21
2.0
21
90
0
64
29
21
29
19
1.98
61841310--61841358
16
3.3
15
83
8
64
48
0
0
51
1.00
61841477--61841539
32
2.0
32
84
6
83
44
6
6
42
1.55
61845764--61845801
20
1.9
19
89
5
58
31
5
13
50
1.63
61854565--61854626
18
3.4
17
76
10
61
27
9
3
59
1.44
61854762--61854807
21
2.2
21
84
0
56
28
8
4
58
1.47
61854829--61854882
3
18.0
3
80
0
63
33
3
3
59
1.33
61855102--61855138
17
2.1
19
85
10
51
27
10
2
59
1.44
61856322--61856363
18
2.2
20
87
8
61
61
4
0
33
1.17
61858135--61858169
17
2.1
17
88
0
52
37
2
8
51
1.47
61860336--61860468
46
2.9
47
81
3
153
32
24
21
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61862861--61862914
15
3.7
15
75
20
51
61
18
12
7
1.54
61866114--61866246
46
2.9
46
85
5
162
33
23
21
21
1.98
61866114--61866287
47
3.7
47
81
6
176
32
24
20
22
1.97
61868308--61868332
10
2.5
10
100
0
50
40
8
0
52
1.31
61868964--61869012
20
2.5
20
100
0
98
32
36
12
18
1.88
61883154--61883267
57
2.0
57
96
0
210
32
16
25
25
1.96
61884058--61884083
4
6.5
4
100
0
52
23
0
0
76
0.78
61892442--61892487
21
2.3
20
78
14
51
45
17
6
30
1.73
61892797--61892898
51
2.0
51
100
0
204
35
9
27
27
1.88
61893488--61893567
39
2.1
39
95
0
142
18
11
21
48
1.79
61900951--61901171
93
2.4
91
89
2
316
20
25
14
38
1.92
61900951--61901174
46
4.8
46
88
3
308
20
25
14
38
1.91
61903327--61903378
11
4.7
11
76
9
52
63
3
0
32
1.12
61906677--61906708
9
3.6
9
91
0
55
68
0
9
21
1.17
61911442--61911492
15
3.3
15
72
17
50
56
1
0
41
1.10
61911489--61911521
15
2.2
15
89
10
50
63
0
0
36
0.95
61911588--61911619
15
2.1
15
100
0
64
34
0
0
65
0.93
61911801--61911854
16
3.4
16
89
0
81
35
18
0
46
1.50
61912021--61912060
17
2.4
17
91
8
64
67
0
0
32
0.91
61912076--61912113
19
2.0
19
89
0
58
63
5
0
31
1.17
61912021--61912128
17
6.2
17
67
19
53
64
2
0
32
1.08
61912079--61912147
34
2.0
34
83
10
88
66
4
0
28
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61912027--61912164
53
2.6
53
79
13
133
62
3
0
34
1.13
61912172--61912231
29
2.0
30
83
3
77
61
5
3
30
1.33
61912262--61912337
30
2.6
30
85
4
93
61
6
0
31
1.21
61912311--61912424
20
5.6
19
68
15
52
55
6
0
37
1.31
61912370--61912424
21
2.7
21
83
8
60
52
7
0
40
1.29
61913040--61913117
40
2.0
39
90
7
122
30
1
8
58
1.37
61913040--61913104
10
6.5
10
71
7
51
27
1
7
63
1.31
61913051--61913123
19
3.7
19
73
8
58
28
1
10
58
1.40
61913409--61913465
27
2.2
26
78
12
62
19
24
7
49
1.73
61916920--61916958
19
2.1
19
100
0
78
23
41
5
30
1.76
61919730--61919944
107
2.0
108
96
0
396
42
8
5
43
1.58
61921855--61921901
21
2.2
22
92
3
78
21
38
19
21
1.94
61936145--61936329
40
4.7
40
80
7
200
25
22
27
24
2.00
61936145--61936329
79
2.3
81
82
7
218
25
22
27
24
2.00
61936194--61936362
79
2.2
79
81
7
202
27
20
26
24
1.99
61945077--61945114
19
2.0
19
94
0
67
23
0
21
55
1.44
61949600--61949650
26
2.0
26
84
7
68
41
23
17
17
1.90
61960840--61960947
25
4.4
25
70
8
87
34
20
25
20
1.96
61960902--61961089
24
7.6
24
67
18
93
35
20
24
19
1.96
61961536--61961577
21
2.0
21
90
0
66
40
16
0
42
1.48
61961536--61961574
5
7.6
5
82
5
51
41
17
0
41
1.50
61965189--61965221
16
2.1
16
100
0
66
48
6
12
33
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61966724--61966770
25
2.0
25
83
8
62
27
14
4
53
1.60
61967031--61967377
46
7.9
46
84
10
449
22
24
15
37
1.93
61967031--61967377
84
3.9
88
90
4
458
22
24
15
37
1.93
61967210--61967369
38
4.0
38
86
12
239
24
25
17
33
1.96
61979906--61979985
32
2.5
32
89
0
124
26
22
11
40
1.87
61980043--61980204
56
2.9
56
83
10
190
24
30
17
27
1.97
61980103--61980204
28
3.6
28
78
12
111
24
32
16
26
1.96
61988898--61988974
39
2.0
40
94
2
138
25
19
24
29
1.98
61991783--61991817
18
1.9
18
88
0
52
45
31
5
17
1.71
62001046--62001110
31
2.1
31
100
0
130
27
18
12
41
1.86
62004168--62004631
47
9.7
47
94
3
761
32
8
29
29
1.87
62004168--62004631
96
4.9
94
93
3
761
32
8
29
29
1.87
62006045--62006356
40
7.8
40
93
0
516
24
21
28
25
1.99
62010250--62010715
47
9.7
47
95
2
772
33
8
28
29
1.87
62010297--62010375
25
3.3
25
61
10
65
32
5
29
32
1.79
62010271--62010715
49
9.3
49
95
2
775
33
8
28
29
1.86
62010271--62010715
145
3.1
145
97
1
817
33
8
28
29
1.86
62010833--62010911
37
2.1
37
83
0
104
24
16
31
27
1.96
62014807--62014948
69
2.1
69
95
0
257
35
8
21
34
1.84
62021678--62021708
16
1.9
16
100
0
62
58
16
0
25
1.38
62024691--62024720
15
2.1
14
93
6
51
76
0
6
16
0.99
62028125--62028495
47
7.8
47
96
1
643
33
8
28
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62028125--62028495
192
1.9
190
96
1
688
33
8
28
29
1.86
62028615--62028693
37
2.1
37
90
0
122
24
18
31
25
1.98
62029907--62030254
40
8.8
39
92
2
545
23
20
29
26
1.99
62030430--62030481
25
2.1
25
85
7
70
28
7
32
30
1.85
62034101--62034424
47
6.8
49
95
3
556
33
8
28
29
1.86
62034101--62034424
96
3.4
96
94
4
566
33
8
28
29
1.86
62034544--62034622
37
2.1
37
90
0
122
24
18
31
25
1.98
62035836--62036225
40
9.8
40
91
0
586
23
21
28
26
1.99
62036401--62036452
25
2.1
25
85
7
70
28
7
32
30
1.85
62040070--62040392
47
6.8
47
93
2
529
32
8
30
29
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333