Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  211  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69265259--69265470
40
5.3
39
86
3
228
25
28
20
25
1.99
69265455--69265532
40
1.9
41
82
10
97
26
28
20
24
1.99
69273207--69273463
39
6.6
39
87
4
281
25
28
20
25
1.99
69273207--69273411
79
2.6
77
87
4
288
25
28
20
24
1.99
69275389--69275515
47
2.6
47
84
8
150
25
29
17
27
1.97
69285948--69286114
46
3.6
46
77
15
207
24
28
17
28
1.98
69285751--69286111
47
7.8
48
78
12
314
24
29
18
27
1.98
69289051--69289213
48
3.4
48
76
9
179
30
15
26
26
1.96
69291647--69291685
18
2.2
18
85
0
51
38
10
30
20
1.86
69295172--69295199
5
5.6
5
100
0
56
21
0
0
78
0.75
69295239--69295324
42
2.0
42
97
0
163
34
9
22
33
1.86
69304207--69304252
24
1.9
24
90
0
74
71
2
0
26
0.97
69304209--69304260
15
3.6
15
78
17
65
73
1
0
25
0.94
69304209--69304260
14
3.6
14
73
21
54
73
1
0
25
0.94
69312678--69312719
21
2.0
21
90
4
66
2
21
0
76
0.90
69312678--69312732
27
2.0
28
82
10
69
3
20
3
72
1.15
69316184--69316302
49
2.4
49
81
4
123
15
24
36
23
1.94
69320352--69320502
43
3.5
42
76
2
140
29
13
22
34
1.92
69336519--69336644
28
4.5
28
92
1
209
26
12
28
32
1.93
69336723--69336788
29
2.3
29
89
5
98
28
10
30
30
1.90
69338370--69338427
22
2.6
22
81
7
64
41
17
5
36
1.72
69338406--69338511
18
5.8
19
84
8
157
37
14
11
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69338409--69338511
37
2.8
37
86
5
147
38
13
11
35
1.81
69338906--69339074
87
1.9
87
82
4
207
28
22
16
31
1.96
69338796--69339283
261
1.9
261
87
2
721
28
23
15
32
1.95
69339140--69339887
200
3.7
201
91
1
1187
29
21
17
30
1.97
69340831--69340886
7
7.7
7
77
15
60
0
14
0
85
0.59
69340831--69340885
6
8.8
6
79
20
60
0
14
0
85
0.60
69340831--69340886
21
2.5
22
85
8
78
0
14
0
85
0.59
69340831--69340888
15
4.0
14
82
12
73
0
15
0
84
0.62
69340832--69340898
15
4.6
14
79
15
57
0
16
0
83
0.64
69340831--69340896
21
3.2
20
74
22
66
0
16
0
83
0.65
69342921--69343451
39
13.5
39
84
2
533
28
27
22
21
1.99
69342982--69343468
40
12.3
40
86
2
572
27
27
22
22
1.99
69342888--69343451
158
3.6
157
88
0
768
29
26
22
21
1.99
69342982--69343468
119
4.1
118
86
2
582
27
27
22
22
1.99
69347159--69347330
46
3.8
46
73
17
151
29
30
19
20
1.97
69347166--69347335
90
1.9
91
87
3
252
28
30
20
20
1.97
69349666--69349721
23
2.4
23
96
0
103
14
41
12
32
1.83
69351580--69351755
46
3.8
45
78
10
185
20
19
30
29
1.97
69351576--69351748
93
1.9
93
92
0
292
20
20
30
28
1.98
69354651--69354729
30
2.6
31
80
11
92
13
16
13
55
1.69
69354660--69354739
15
5.4
15
75
12
76
12
16
12
58
1.63
69357819--69357866
16
3.1
15
90
6
69
64
2
2
31
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69357815--69357866
8
6.5
8
82
8
61
65
1
1
30
1.14
69357814--69357870
24
2.4
24
79
5
71
64
1
3
29
1.20
69357978--69358036
23
2.8
19
75
12
55
57
5
5
32
1.42
69357995--69358078
22
3.7
22
78
10
80
54
5
7
32
1.52
69358018--69358078
24
2.7
23
84
5
79
52
6
8
32
1.57
69358103--69358236
25
5.6
25
71
11
93
58
2
3
35
1.28
69358718--69358892
30
5.8
30
93
0
296
22
3
49
25
1.65
69358718--69358892
60
2.9
60
98
0
332
22
3
49
25
1.65
69359470--69359519
14
3.6
14
81
7
57
64
4
12
20
1.43
69359499--69359741
75
3.3
74
85
5
303
34
20
16
27
1.95
69359728--69359755
14
2.0
14
100
0
56
57
7
21
14
1.61
69359648--69359896
90
2.8
88
85
8
346
36
20
17
26
1.94
69359823--69359964
72
2.0
73
91
1
232
38
22
15
23
1.92
69359939--69360269
184
1.9
181
81
8
419
34
22
15
27
1.94
69360228--69360494
72
3.6
72
88
4
390
30
23
16
29
1.96
69368757--69368790
8
4.5
8
96
3
54
64
5
0
29
1.17
69368750--69368797
16
3.1
15
84
6
60
64
4
2
29
1.23
69368924--69369010
25
3.7
24
79
10
83
55
5
6
32
1.50
69369024--69369080
14
4.1
13
75
22
53
63
0
3
33
1.12
69369642--69369839
30
6.8
30
85
8
275
22
2
50
24
1.61
69369664--69369834
53
3.1
53
86
11
252
23
1
50
23
1.58
69369642--69369804
83
2.0
83
96
0
299
22
1
50
24
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69373009--69373066
22
2.6
22
81
7
64
41
17
5
36
1.72
69373045--69373167
19
6.8
19
80
10
159
36
14
12
36
1.84
69373045--69373167
54
2.3
54
92
0
201
36
14
12
36
1.84
69373045--69373164
35
3.3
36
80
6
145
36
15
12
35
1.85
69374140--69374355
45
4.6
48
79
11
209
29
19
30
21
1.97
69376092--69376158
28
2.4
28
87
5
91
29
14
23
31
1.95
69387142--69387168
11
2.5
11
100
0
54
25
29
25
18
1.98
69391574--69391935
49
7.7
46
74
14
212
27
19
29
23
1.98
69393077--69393116
21
2.0
20
85
5
53
10
37
27
25
1.88
69406336--69406373
19
2.0
19
94
0
67
28
26
10
34
1.90
69412950--69412974
3
8.3
3
100
0
50
32
0
0
68
0.90
69413115--69413140
12
2.2
12
100
0
52
76
0
7
15
0.99
69413136--69413190
15
3.7
15
76
13
51
70
3
21
3
1.18
69413122--69413216
26
3.6
25
71
19
70
72
2
21
4
1.12
69416055--69416095
17
2.4
17
95
0
73
41
2
4
51
1.36
69426689--69426736
24
2.0
25
91
4
80
66
2
2
29
1.14
69427112--69427144
16
2.0
17
88
5
50
48
12
6
33
1.65
69435663--69435704
18
2.3
19
88
8
61
40
0
4
54
1.21
69435668--69435726
20
2.9
21
80
14
61
38
3
3
54
1.34
69435663--69435717
20
2.8
20
84
10
62
40
1
3
54
1.28
69437889--69438111
49
4.6
47
78
5
196
24
22
17
35
1.95
69437852--69438108
98
2.6
97
80
9
265
22
22
16
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69437893--69438111
98
2.2
97
82
11
270
24
23
16
35
1.95
69440646--69440683
18
2.1
18
90
0
58
0
26
0
73
0.83
69448763--69448804
20
2.1
20
86
8
59
33
0
9
57
1.31
69451176--69451211
19
1.9
18
88
5
54
2
11
22
63
1.39
69454315--69454350
10
3.5
10
96
3
63
86
2
11
0
0.68
69462011--69462060
2
25.0
2
100
0
100
50
0
50
0
1.00
69462678--69462734
27
2.2
27
81
6
73
45
0
3
50
1.18
69471137--69471241
40
2.6
40
77
7
104
28
15
26
29
1.96
69475565--69475617
26
2.0
27
85
7
74
24
15
22
37
1.92
69477106--69477187
26
3.2
26
94
0
146
36
25
8
29
1.86
69483621--69483673
26
2.0
27
85
7
74
24
15
22
37
1.92
69485067--69485329
40
6.6
40
87
3
307
26
27
20
25
1.99
69485261--69485338
40
1.9
41
82
10
97
26
28
21
23
1.99
69488325--69488380
26
2.2
26
96
0
103
37
26
5
30
1.79
69489183--69489213
15
2.0
16
93
6
55
32
0
35
32
1.58
69492922--69492960
21
1.9
20
89
5
60
48
20
0
30
1.50
69498558--69498667
43
2.6
43
84
7
136
25
15
27
31
1.96
69498523--69498667
43
3.4
43
76
8
134
23
15
28
33
1.95
69501464--69501530
30
2.2
30
94
0
116
23
31
23
20
1.98
69512226--69512255
14
2.1
15
93
6
53
20
10
13
56
1.65
69514478--69514803
174
1.9
174
95
0
589
31
23
14
30
1.94
69514758--69514833
29
2.6
29
83
12
102
30
27
13
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69522530--69522763
45
5.2
45
91
4
359
22
22
29
25
1.99
69528963--69529140
40
4.5
40
88
3
236
22
24
28
24
1.99
69541460--69541641
40
4.6
40
88
0
267
24
22
27
25
2.00
69548567--69548645
23
3.4
24
77
8
83
34
17
25
22
1.96
69552892--69552945
27
2.0
27
85
0
72
40
7
14
37
1.74
69553191--69553374
50
3.7
49
83
5
201
27
17
25
29
1.97
69555107--69555141
14
2.5
14
90
0
52
45
2
17
34
1.63
69556203--69556229
14
1.9
14
100
0
54
48
7
7
37
1.59
69558513--69558554
22
1.9
22
85
9
59
30
0
38
30
1.58
69580674--69580792
56
2.1
56
85
1
168
37
24
11
26
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333