genome.fa.s3.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  108  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34740663--34740813	55	2.8	54	92	1	239	27	13	29	29	1.94
34748731--34748854	27	4.6	27	92	2	194	28	12	29	29	1.93
34748731--34748854	55	2.3	54	91	1	194	28	12	29	29	1.93
34761327--34761455	46	2.8	46	89	0	195	27	28	23	20	1.99
34761335--34761474	46	3.0	45	84	4	140	27	28	22	21	1.99
34764123--34764234	35	3.2	35	80	2	109	26	22	17	33	1.96
34764181--34764269	35	2.5	35	90	3	144	25	17	21	34	1.96
34766555--34766607	27	2.0	27	81	7	63	56	7	11	24	1.60
34768686--34768816	55	2.4	54	89	6	194	28	30	20	20	1.98
34769626--34769843	47	4.7	46	81	9	232	24	29	18	27	1.98
34769573--34769843	94	2.9	90	79	11	280	23	29	18	28	1.98
34776038--34776093	15	3.5	15	71	21	51	25	21	30	23	1.99
34776039--34776101	33	1.9	33	96	0	117	26	23	26	22	2.00
34776053--34776129	18	4.4	18	68	15	72	20	32	25	20	1.97
34776138--34776251	55	2.1	53	82	8	131	26	33	20	20	1.97
34776154--34776285	54	2.4	52	82	5	138	28	29	18	22	1.98
34777139--34777312	47	3.7	48	80	11	191	24	32	18	24	1.97
34783274--34783445	40	4.3	40	88	2	222	25	27	21	25	1.99
34783276--34783498	40	5.6	39	83	5	216	25	27	21	25	1.99
34783274--34783498	80	2.8	79	80	7	240	25	27	21	25	1.99
34783430--34783507	40	1.9	41	82	10	97	26	28	20	24	1.99
34791195--34791366	40	4.3	40	88	2	222	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34791197--34791419	40	5.6	39	83	5	216	25	27	21	25	1.99
34791195--34791419	80	2.8	79	80	7	240	25	27	21	25	1.99
34791351--34791428	40	1.9	41	82	10	97	26	28	20	24	1.99
34800633--34800671	19	2.1	19	100	0	78	58	0	20	20	1.39
34802501--34802548	10	4.6	10	77	10	51	60	2	2	35	1.20
34802499--34802548	22	2.4	21	86	6	66	58	4	2	36	1.29
34805080--34805251	46	3.7	46	81	11	167	25	31	16	26	1.97
34809265--34809309	18	2.5	18	85	0	54	24	17	26	31	1.97
34811809--34811856	17	2.8	18	87	6	73	50	0	2	47	1.12
34811809--34811902	23	4.3	23	78	9	83	47	2	3	46	1.30
34811821--34811904	11	7.8	11	67	15	50	46	2	3	47	1.32
34816947--34816980	17	2.1	17	88	5	52	5	17	0	76	0.98
34818381--34818517	41	3.3	41	78	8	143	37	13	24	24	1.92
34819226--34819393	14	11.7	14	70	10	63	20	1	27	50	1.55
34819297--34819386	28	3.2	28	78	12	78	20	0	27	52	1.47
34819816--34819940	41	3.0	40	78	2	133	32	16	22	28	1.96
34821130--34822528	23	61.4	23	73	11	896	33	4	22	39	1.74
34821130--34821939	160	5.1	160	83	4	852	33	4	22	39	1.74
34821147--34822507	206	6.6	203	86	4	1550	33	4	22	39	1.74
34823198--34823448	43	5.9	43	84	0	270	25	17	27	30	1.97
34823210--34823448	128	1.9	129	85	0	336	25	17	26	29	1.98
34823252--34823445	85	2.3	85	82	0	235	26	17	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34823610--34823682	36	2.0	36	97	0	137	34	21	24	19	1.96
34826067--34826177	27	4.2	26	86	5	141	37	21	23	17	1.93
34827542--34827647	24	4.4	24	87	7	135	16	37	6	38	1.75
34828307--34828354	18	2.6	19	80	9	64	45	8	20	25	1.79
34828685--34828881	27	7.3	27	81	6	213	36	18	15	29	1.92
34828681--34828881	81	2.5	81	83	3	271	36	18	15	29	1.92
34831380--34831449	34	2.1	34	100	0	140	34	21	11	32	1.89
34832528--34832583	23	2.4	23	77	11	60	58	10	8	21	1.58
34834553--34834646	28	3.3	28	70	15	84	30	26	12	29	1.93
34834548--34834659	57	2.0	57	87	0	161	30	25	12	31	1.93
34834772--34834906	53	2.5	53	85	4	191	28	20	14	37	1.91
34834772--34834926	53	2.9	53	81	5	188	27	19	13	39	1.89
34837455--34837726	46	5.8	46	77	9	225	25	31	17	25	1.97
34840330--34840384	16	3.4	17	85	5	62	36	5	25	32	1.79
34840550--34840688	58	2.4	57	81	4	163	51	2	1	43	1.25
34857207--34857261	28	1.9	29	85	3	76	16	23	41	18	1.89
34859706--34859808	54	1.9	54	89	0	161	20	33	21	24	1.97
34869416--34869474	14	3.4	19	65	26	58	3	3	16	76	1.06
34869416--34869474	32	2.0	29	87	12	84	3	3	16	76	1.06
34872249--34872320	36	2.0	36	97	0	135	43	11	23	22	1.85
34874660--34874737	38	2.1	38	92	0	129	43	17	16	21	1.88
34878271--34878313	16	2.7	16	88	0	68	48	18	23	9	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34878271--34878313	8	5.4	8	80	0	50	48	18	23	9	1.76
34878538--34878608	29	2.5	28	83	2	88	28	14	28	29	1.95
34882397--34882547	27	5.6	27	84	3	160	28	28	15	27	1.96
34882397--34882547	55	2.8	54	82	4	169	28	28	15	27	1.96
34884416--34884446	16	1.9	16	93	0	53	9	9	9	70	1.33
34886148--34886197	24	2.1	23	88	3	73	46	2	0	52	1.12
34886302--34886345	23	1.9	23	100	0	88	45	9	22	22	1.80
34890079--34890247	83	2.0	84	84	5	218	38	18	6	36	1.77
34890256--34890306	19	2.7	19	88	8	70	62	0	5	31	1.19
34890271--34890316	19	2.4	19	92	0	74	56	0	4	39	1.19
34890570--34890620	18	2.8	18	82	11	59	27	5	1	64	1.27
34891284--34891335	26	2.0	26	100	0	104	38	7	7	46	1.61
34893738--34894057	160	2.0	160	98	1	615	23	22	17	36	1.95
34896784--34896810	14	1.9	14	100	0	54	37	14	11	37	1.82
34905261--34905305	8	5.4	8	79	10	54	31	0	2	66	1.04
34907953--34908023	35	2.0	35	94	0	124	47	2	11	38	1.54
34909912--34910068	43	3.6	44	77	7	162	29	26	19	24	1.98
34910604--34910642	19	2.1	19	90	9	62	46	20	2	30	1.64
34931106--34931144	13	2.9	13	84	3	51	28	2	10	58	1.44
34934917--34934949	13	2.6	13	90	4	50	48	12	0	39	1.40
34937680--34937741	5	12.8	5	72	24	53	77	0	4	17	0.94
34937700--34937742	13	3.0	14	86	13	61	81	0	4	13	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34937700--34937742	14	3.1	13	90	10	59	81	0	4	13	0.84
34941698--34941755	13	5.0	12	73	26	54	70	1	10	17	1.23
34941712--34941740	13	2.2	13	100	0	58	79	0	6	13	0.93
34942831--34942864	18	1.9	18	88	5	52	52	2	35	8	1.47
34952771--34952868	31	3.2	31	68	23	98	22	2	32	42	1.65
34952762--34952884	61	2.0	61	100	0	246	21	3	32	43	1.69
34958471--34958518	24	2.0	24	100	0	96	33	25	8	33	1.86
34967815--34968008	40	4.9	40	90	0	300	28	22	27	21	1.99
34967815--34968035	40	5.6	40	88	2	277	29	23	26	20	1.99
34984730--34985006	141	1.9	142	80	10	316	22	29	19	28	1.98
34986497--34986549	22	2.3	23	87	9	81	28	39	1	30	1.67
34989741--34989778	19	2.0	19	100	0	76	26	15	26	31	1.96
34989745--34989786	19	2.2	19	86	0	57	30	19	21	28	1.97
34997459--34997677	46	4.7	47	79	11	202	23	30	19	26	1.98
34997464--34997677	92	2.3	95	82	10	255	23	30	19	26	1.98
35013088--35013237	43	3.5	43	74	5	133	25	16	24	34	1.95
35024435--35024560	50	2.6	49	87	3	164	30	28	15	25	1.96
35026749--35026815	14	4.6	15	72	17	61	62	14	11	10	1.54
35026758--35026815	30	1.9	30	89	6	91	62	13	12	12	1.56
35026749--35026809	15	4.1	15	73	24	58	62	13	13	11	1.55
35029820--35029963	49	2.9	48	81	6	180	29	29	17	23	1.97
35029830--35029967	50	2.8	51	84	3	183	29	31	15	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35036696--35036852	43	3.7	43	81	5	140	24	15	24	35	1.94
35036693--35036878	86	2.2	86	78	3	196	26	15	23	33	1.95
35036782--35036878	43	2.3	43	78	3	106	25	19	25	28	1.99
35042207--35042250	22	2.0	22	86	8	63	54	18	0	27	1.44
35044597--35044909	46	6.6	45	75	12	220	23	30	19	27	1.98
35044597--35044958	46	7.6	46	74	14	183	23	29	19	27	1.98
35047290--35047338	20	2.5	20	93	0	80	26	24	0	48	1.51
35050302--35050358	14	4.1	14	82	6	64	71	1	10	15	1.21
35059418--35059468	27	1.9	26	84	4	66	35	19	27	17	1.94
35060121--35060237	27	4.3	27	80	0	126	24	22	16	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333