genome.fa.s3.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  153  of  333  ( 39894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49954675--49954950	114	2.4	114	88	2	401	30	25	20	23	1.99
49954675--49954914	38	6.3	38	91	0	381	30	25	20	22	1.99
49971188--49971308	46	2.6	48	85	5	158	28	18	28	23	1.98
49971191--49971500	49	6.5	49	76	8	232	27	19	29	24	1.98
49971183--49971452	142	1.9	138	85	7	366	26	18	29	25	1.98
49979662--49979741	27	3.0	27	88	0	115	31	15	22	31	1.94
49979736--49980011	27	10.2	28	80	7	166	43	19	7	29	1.78
49979753--49979905	54	2.9	54	87	2	193	43	19	6	30	1.76
49979753--49979904	81	1.9	80	86	1	214	44	19	6	29	1.76
49979753--49979932	81	2.2	81	83	2	211	43	20	6	29	1.77
49980308--49980427	41	2.9	41	94	0	213	21	22	30	25	1.99
49986618--49986841	40	5.5	40	90	3	281	24	28	21	25	1.99
49986618--49986848	86	2.8	82	87	5	299	24	27	21	26	1.99
49986655--49986848	43	4.7	43	92	1	292	25	27	21	26	1.99
49994614--49994837	40	5.5	40	91	3	299	24	29	21	24	1.99
49994651--49994844	43	4.7	43	94	1	301	25	28	21	24	1.99
49994614--49994844	86	2.8	83	88	4	326	24	29	21	25	1.99
49999311--49999343	13	2.6	13	90	4	50	39	0	12	48	1.40
50004682--50004735	6	8.8	6	89	2	72	14	3	1	79	0.95
50007631--50007663	13	2.6	13	90	4	50	39	0	12	48	1.40
50011853--50011891	21	1.9	20	84	5	51	30	2	20	46	1.64
50026639--50026677	20	2.0	20	94	0	69	41	5	20	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50028872--50028903	16	2.0	16	93	0	55	34	6	34	25	1.81
50040579--50040628	25	2.0	25	92	0	82	24	4	36	36	1.74
50045582--50045631	25	2.0	25	92	0	82	24	4	36	36	1.74
50045832--50045887	27	2.1	27	100	0	112	23	10	7	58	1.56
50054303--50054523	117	1.9	117	80	3	257	33	29	13	23	1.93
50056582--50056614	17	2.0	17	88	5	50	36	9	15	39	1.79
50064107--50064172	33	2.0	33	100	0	132	42	6	9	42	1.61
50067724--50067753	11	2.7	11	100	0	60	20	33	6	40	1.78
50075705--50075736	15	2.1	15	100	0	64	46	0	28	25	1.53
50094001--50094191	40	4.8	40	90	2	269	23	24	29	23	1.99
50097137--50097306	47	3.6	47	78	10	213	21	20	29	28	1.98
50097138--50097359	46	4.8	46	78	13	215	20	21	30	27	1.98
50097138--50097352	93	2.3	93	96	0	394	20	21	30	27	1.98
50106860--50107077	117	1.9	117	79	5	253	31	25	15	27	1.95
50117433--50117486	22	2.5	22	96	0	99	14	29	25	29	1.95
50119235--50119312	38	2.1	38	100	0	156	34	2	15	47	1.59
50125178--50125235	30	1.9	30	86	13	84	22	31	29	17	1.96
50130556--50130959	47	8.6	47	93	1	655	29	29	8	33	1.87
50130556--50130959	143	2.9	143	93	1	672	29	29	8	33	1.87
50135543--50135759	40	5.5	40	90	3	316	24	23	27	24	2.00
50135539--50135759	79	2.8	80	89	4	324	25	23	27	24	2.00
50151091--50151307	40	5.5	40	85	3	271	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50151093--50151307	119	1.8	119	83	6	292	25	22	27	25	2.00
50165700--50165724	6	4.2	6	100	0	50	16	0	0	84	0.63
50168996--50169168	46	3.7	46	77	13	201	21	20	27	29	1.98
50168993--50169163	93	1.8	93	94	0	306	21	21	28	28	1.98
50170717--50170774	30	1.9	30	82	3	71	50	3	22	24	1.65
50179851--50180023	46	3.8	45	79	10	181	23	20	27	29	1.99
50179848--50180018	93	1.8	93	92	0	288	22	20	28	28	1.99
50181395--50181452	30	1.9	30	82	3	71	50	3	22	24	1.65
50198882--50198929	22	2.1	24	88	7	73	43	2	12	41	1.54
50202091--50202149	10	5.9	10	80	7	75	66	1	10	22	1.31
50202779--50202809	16	1.9	16	93	0	53	3	16	0	80	0.83
50213355--50213412	19	3.0	19	82	2	62	67	1	8	22	1.27
50213355--50213413	10	6.0	10	73	11	59	67	1	8	22	1.26
50224556--50224614	29	2.0	29	86	3	82	37	6	25	30	1.82
50226552--50226608	30	1.9	30	82	7	71	49	3	22	24	1.66
50257075--50257180	42	2.5	43	84	1	133	20	22	29	27	1.99
50257075--50257200	43	3.0	43	84	1	146	21	21	29	27	1.98
50257159--50257258	51	2.0	51	82	4	121	23	19	27	31	1.98
50261076--50261133	15	3.9	15	81	0	71	10	18	15	55	1.68
50263933--50264018	43	2.0	43	86	0	118	18	20	31	29	1.97
50263977--50264076	51	2.0	51	81	0	119	22	18	26	34	1.96
50267677--50267852	46	3.8	46	78	15	200	21	19	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50267673--50267844	93	1.8	93	93	0	299	20	20	30	28	1.98
50272671--50272756	43	2.0	43	83	0	109	19	22	30	27	1.98
50272715--50272814	51	2.0	51	85	0	137	22	18	28	32	1.97
50276625--50276680	15	3.8	15	76	2	60	14	17	12	55	1.69
50279450--50279575	43	3.0	43	83	1	146	21	19	29	29	1.98
50279534--50279633	51	2.0	51	84	4	130	22	19	28	31	1.97
50284038--50284214	46	3.8	46	78	16	195	22	19	28	29	1.98
50284034--50284206	93	1.9	93	93	2	303	21	19	29	28	1.98
50288428--50288510	40	2.1	40	100	0	166	21	4	25	48	1.70
50288976--50289033	15	3.9	15	79	0	71	12	17	12	58	1.63
50307147--50307297	48	3.2	48	92	1	234	34	14	23	27	1.94
50331902--50332072	93	1.8	93	93	0	297	27	29	21	21	1.99
50331894--50332069	46	3.8	46	80	10	205	28	28	21	21	1.98
50337423--50337593	93	1.8	93	93	0	297	28	29	21	21	1.98
50337415--50337590	46	3.8	46	78	10	205	28	28	20	21	1.98
50370816--50370844	15	2.0	15	93	6	51	68	0	0	31	0.89
50371143--50371207	21	3.2	21	70	12	55	66	3	1	29	1.16
50378727--50378949	40	5.6	39	82	5	216	27	27	20	24	1.99
50378725--50378949	80	2.8	79	82	6	240	27	28	20	24	1.99
50378727--50378949	120	1.9	119	83	4	288	27	27	20	24	1.99
50386631--50386853	40	5.6	39	82	5	216	27	27	20	24	1.99
50386629--50386853	80	2.8	79	82	6	240	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50386631--50386853	120	1.9	119	83	4	288	27	27	20	24	1.99
50398200--50398587	43	9.7	42	82	10	398	31	13	27	27	1.94
50398200--50398587	85	4.8	85	83	11	425	31	13	27	27	1.94
50400153--50400234	24	3.5	24	80	8	80	37	3	0	58	1.16
50400385--50400496	10	11.1	10	69	24	51	33	6	0	59	1.28
50406394--50406471	21	3.7	22	77	19	85	62	1	1	34	1.11
50406402--50406445	12	3.4	12	87	12	61	63	2	0	34	1.07
50406399--50406467	9	8.1	9	80	13	67	60	1	1	36	1.14
50406492--50406535	16	2.9	15	83	12	54	63	0	6	29	1.20
50406603--50406645	20	2.2	20	83	8	52	62	2	2	32	1.20
50406597--50406638	15	2.7	15	86	13	59	66	0	2	30	1.04
50417027--50417204	79	2.3	79	91	1	279	26	28	20	24	1.99
50417027--50417204	39	4.6	40	92	3	274	26	28	20	24	1.99
50417027--50417279	39	6.5	39	83	8	266	26	28	20	24	1.99
50424566--50424827	40	6.6	40	87	3	316	26	27	20	24	1.99
50424566--50424827	119	2.2	119	83	4	323	26	27	20	24	1.99
50424569--50424827	79	3.3	80	86	3	274	26	28	20	24	1.99
50426804--50426983	40	4.6	40	89	3	249	25	24	25	24	2.00
50426804--50426983	79	2.3	80	87	3	249	25	24	25	24	2.00
50434131--50434164	14	2.4	14	90	5	50	50	5	8	35	1.58
50435171--50435282	27	4.2	26	85	7	125	35	20	25	18	1.95
50435171--50435282	54	2.1	54	84	3	145	35	20	25	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50435699--50435728	8	3.8	8	90	0	51	3	23	23	50	1.64
50436717--50436809	24	3.9	24	95	0	159	20	41	5	32	1.75
50439432--50439504	33	2.2	32	88	7	110	39	5	19	35	1.75
50440521--50440823	27	11.3	27	87	1	412	39	20	8	31	1.82
50440521--50440904	54	7.2	53	83	3	423	39	20	8	31	1.83
50440521--50440904	27	14.3	27	83	4	379	39	20	8	31	1.83
50440521--50440906	81	4.8	81	83	3	422	39	20	8	31	1.83
50440627--50440942	81	3.9	81	80	6	230	38	20	8	31	1.83
50440601--50440942	27	12.7	27	80	7	108	38	20	8	31	1.83
50440926--50441173	27	9.3	27	87	1	320	32	20	21	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333