Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  268  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88624313--88624364
21
2.5
20
81
12
59
63
5
0
30
1.18
88624634--88624673
18
2.2
18
90
4
62
62
7
10
20
1.50
88624978--88625083
40
2.7
38
77
14
115
28
18
24
28
1.98
88624980--88625358
154
2.5
154
84
3
494
28
20
24
26
1.99
88625132--88625241
40
2.7
39
76
8
103
27
20
23
28
1.99
88625303--88625402
40
2.4
42
81
6
125
34
20
22
24
1.97
88625058--88625399
155
2.2
154
83
4
411
29
20
23
26
1.99
88625669--88625725
15
3.7
15
74
4
51
42
29
0
28
1.56
88626370--88626506
73
1.9
72
84
1
184
24
2
32
40
1.68
88626659--88626711
16
3.1
16
78
10
61
41
7
5
45
1.56
88626824--88626859
17
2.2
17
95
5
65
22
0
5
72
1.05
88628838--88628867
15
1.9
16
93
6
53
20
10
26
43
1.83
88630557--88630593
14
2.7
13
88
12
56
48
0
10
40
1.38
88631042--88631070
15
1.9
15
100
0
58
24
6
20
48
1.74
88631294--88631974
357
1.9
358
97
0
1285
35
14
10
39
1.80
88633861--88633889
14
2.1
14
93
6
51
34
0
6
58
1.25
88634301--88634341
21
2.0
21
95
0
73
26
19
53
0
1.45
88634695--88634965
43
6.3
43
89
1
429
20
26
20
32
1.97
88634695--88634966
128
2.1
128
89
3
422
20
26
20
32
1.97
88634695--88634967
85
3.2
85
92
2
458
20
26
20
32
1.97
88635843--88635879
19
1.9
19
88
0
56
21
5
35
37
1.77
88636115--88636540
88
4.8
87
84
5
509
22
23
21
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88636214--88636530
44
7.2
44
63
19
124
23
23
20
32
1.98
88640575--88640621
19
2.5
20
86
6
62
42
12
21
23
1.87
88642655--88642699
15
3.3
14
82
14
58
66
0
4
28
1.11
88642645--88642704
15
3.5
18
73
17
56
66
1
5
26
1.21
88642885--88642976
30
3.3
29
73
17
86
59
7
3
29
1.41
88642882--88642933
16
3.2
16
75
17
54
61
7
0
30
1.24
88643226--88643265
18
2.2
18
90
4
62
62
7
10
20
1.50
88648405--88648475
24
2.8
25
78
10
72
49
35
1
14
1.52
88649477--88649702
3
74.7
3
71
5
141
29
9
1
59
1.38
88649699--88649748
17
2.9
17
75
21
50
22
0
4
74
0.99
88649680--88649760
23
3.5
22
77
11
65
23
0
2
74
0.94
88649686--88649754
28
2.4
28
77
15
70
23
0
2
73
0.96
88649711--88649761
12
4.2
12
87
7
59
21
0
1
76
0.88
88649778--88649819
21
1.9
22
85
9
59
19
14
4
61
1.49
88653337--88653613
50
5.5
50
94
0
464
36
15
21
26
1.93
88653589--88653768
31
5.8
31
92
0
270
27
20
26
25
1.99
88653881--88653994
42
2.7
43
84
4
151
31
13
25
29
1.93
88657547--88657619
38
1.9
38
100
0
146
34
12
21
31
1.91
88658833--88658878
21
2.2
21
84
3
58
82
2
8
6
0.91
88660017--88660313
92
3.3
91
72
11
284
33
16
21
28
1.95
88660097--88660516
44
9.4
43
69
12
242
31
17
21
29
1.96
88659834--88660358
181
2.9
180
85
4
655
31
16
22
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88662068--88662385
3
106.3
3
72
7
218
27
8
1
62
1.33
88662406--88662459
5
9.5
6
78
15
53
18
0
1
79
0.82
88662343--88662460
18
6.9
16
72
15
69
22
4
1
71
1.13
88662393--88662459
22
3.0
22
91
4
98
17
1
2
77
0.97
88674414--88674450
6
6.2
6
90
9
58
29
0
0
70
0.88
88674880--88674907
6
4.7
6
100
0
56
32
0
0
67
0.91
88675194--88675262
31
2.2
32
92
2
113
27
17
5
49
1.69
88675415--88675441
14
1.9
14
100
0
54
40
7
22
29
1.81
88675603--88675629
13
2.1
13
100
0
54
29
7
7
55
1.55
88678478--88678548
25
2.8
25
93
0
115
23
22
26
26
2.00
88681313--88681374
25
2.5
26
78
5
65
32
22
25
19
1.97
88681356--88681497
24
5.7
25
70
10
96
35
19
24
19
1.95
88682367--88682434
32
2.2
31
81
7
75
29
5
2
61
1.34
88687133--88687213
34
2.3
34
75
14
85
59
6
7
27
1.48
88689974--88690088
50
2.3
50
74
15
112
49
12
11
26
1.74
88695277--88695339
32
2.0
32
83
0
81
44
17
6
31
1.74
88695699--88695735
19
2.0
19
89
5
58
45
0
0
54
1.00
88698338--88698383
14
3.3
14
79
11
58
39
0
6
54
1.26
88700644--88700676
17
2.0
16
94
5
57
66
0
3
30
1.06
88700795--88700843
16
3.1
16
87
0
71
73
6
16
4
1.19
88700792--88700896
4
24.5
4
70
21
63
68
4
23
2
1.22
88703243--88703298
22
2.7
20
83
5
67
21
23
32
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88704601--88704647
18
2.9
16
77
20
53
46
2
0
51
1.13
88706039--88706123
10
8.9
9
73
15
64
61
1
2
35
1.17
88706048--88706125
19
4.2
18
75
14
77
60
1
2
35
1.19
88706135--88706187
21
2.5
20
82
8
61
56
1
5
35
1.34
88709529--88709581
21
2.5
21
90
0
79
30
35
9
24
1.87
88709650--88709823
87
2.0
87
100
0
348
34
19
9
36
1.84
88710080--88710122
20
2.2
20
87
8
61
53
0
41
4
1.21
88711891--88711923
17
1.9
17
93
0
57
48
6
9
36
1.60
88714125--88714262
62
2.2
63
81
10
149
31
22
19
26
1.98
88721976--88722006
16
1.9
16
93
0
53
80
3
12
3
0.95
88721976--88722036
6
10.0
6
74
13
54
77
3
14
4
1.07
88730820--88730877
29
2.0
29
82
0
71
36
31
10
22
1.88
88735722--88735753
5
6.6
5
92
7
57
81
0
0
18
0.70
88735723--88735753
9
3.3
9
95
4
53
80
0
0
19
0.71
88740643--88740749
17
6.3
17
79
4
108
34
11
14
40
1.81
88743644--88743729
45
1.9
45
92
4
147
18
25
34
20
1.96
88748891--88748923
17
2.0
17
94
5
59
33
30
18
18
1.94
88752492--88752523
16
2.0
16
100
0
64
25
18
37
18
1.94
88753241--88753278
18
2.2
17
86
9
51
42
2
0
55
1.14
88753243--88753530
120
2.4
120
91
3
481
42
3
4
50
1.37
88753371--88753426
15
4.1
14
78
14
55
41
0
0
58
0.98
88753302--88753488
61
3.1
61
67
20
183
40
3
6
49
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88753482--88753516
18
2.0
17
88
5
52
45
0
0
54
0.99
88753470--88753744
147
1.9
149
96
1
509
47
2
3
46
1.33
88753629--88753663
18
2.0
17
88
5
52
45
0
0
54
0.99
88753825--88753919
45
2.1
45
86
1
129
33
26
5
34
1.79
88755715--88755756
21
1.9
23
85
9
61
66
28
0
4
1.12
88759212--88759276
30
2.2
30
97
0
121
58
12
3
26
1.49
88765941--88765979
20
2.0
21
90
10
64
51
7
5
35
1.53
88766926--88767166
40
6.0
40
84
1
259
34
16
28
20
1.94
88766923--88767144
120
1.9
120
85
0
309
34
16
27
20
1.95
88766923--88767166
80
3.0
80
82
3
312
34
16
27
21
1.95
88773958--88774135
72
2.5
72
81
1
205
30
27
17
24
1.97
88780142--88780185
22
2.0
22
91
8
72
36
20
25
18
1.95
88780160--88780221
25
2.5
25
86
0
88
38
17
22
20
1.93
88781250--88781274
13
1.9
13
100
0
50
0
28
0
72
0.86
88781325--88781400
5
15.0
5
75
19
61
55
3
0
40
1.18
88781323--88781364
21
2.0
21
90
9
68
54
0
0
45
0.99
88781325--88781404
29
2.9
27
79
20
85
53
3
0
42
1.18
88782013--88782182
85
2.0
85
87
2
243
28
14
19
37
1.91
88785090--88785314
48
4.8
48
72
9
169
25
27
17
28
1.98
88785090--88785321
96
2.5
96
77
6
219
26
27
17
28
1.97
88787160--88787354
75
2.7
70
84
5
228
42
6
8
42
1.60
88789479--88789509
13
2.4
13
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88789970--88790014
22
2.0
22
100
0
90
51
13
8
26
1.70
88793704--88793771
6
12.8
5
76
14
50
75
2
4
17
1.10
88793724--88793773
11
4.3
12
73
16
52
76
4
4
16
1.10
88793724--88793775
6
9.0
6
85
4
54
76
3
3
15
1.07
88800530--88800576
16
3.0
16
87
9
62
0
29
2
68
1.02
88806207--88806291
28
3.0
28
77
0
98
34
16
17
31
1.93
88808487--88808534
24
2.0
24
87
0
69
18
20
8
52
1.71
88808499--88808603
41
2.6
40
87
3
156
24
21
6
46
1.75
88810392--88810422
15
2.1
15
100
0
62
35
12
6
45
1.68
88818411--88818454
9
4.8
9
77
5
52
34
2
40
22
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333