Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Length:  108673976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   

This is table  320  of  333  ( 39894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104336166--104336223
10
5.6
10
83
2
62
82
0
13
3
0.79
104336177--104336237
7
8.9
7
76
20
58
85
0
11
3
0.72
104336165--104336230
20
3.2
20
87
6
89
83
0
13
3
0.76
104337185--104337413
79
2.8
80
85
6
307
28
21
22
27
1.99
104337304--104337540
127
1.9
127
96
0
438
30
21
21
27
1.98
104337401--104337919
84
6.2
84
88
4
755
30
22
21
24
1.99
104337195--104337624
211
2.1
206
91
2
698
29
20
22
26
1.99
104337401--104337919
250
2.1
248
87
4
747
30
22
21
24
1.99
104337401--104337919
166
3.1
164
87
5
684
30
22
21
24
1.99
104338655--104338722
19
3.7
19
88
7
113
38
10
14
36
1.81
104338717--104338760
22
2.0
21
83
12
54
36
6
13
43
1.71
104338661--104338733
36
2.0
36
89
5
110
41
9
13
35
1.77
104340132--104340188
18
3.2
19
90
9
93
38
10
15
35
1.82
104340149--104340211
23
3.0
22
84
11
71
36
7
17
38
1.79
104341792--104342067
39
7.1
39
92
0
435
29
28
21
20
1.98
104342061--104342151
39
2.3
39
81
12
114
25
23
19
31
1.98
104343043--104343083
3
13.7
3
100
0
82
0
0
31
68
0.90
104343345--104343440
42
2.3
42
89
3
140
28
15
33
22
1.95
104344059--104344108
21
2.3
21
89
3
73
22
8
26
44
1.80
104344240--104344392
43
3.6
42
83
6
182
31
23
15
29
1.95
104345280--104345317
19
2.1
18
85
9
51
52
0
7
39
1.31
104350242--104350543
41
7.4
41
87
2
376
18
21
24
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104350762--104350847
42
2.0
42
90
0
136
36
16
30
17
1.92
104352028--104352135
26
4.2
26
97
0
207
30
6
26
36
1.82
104353406--104353440
14
2.5
14
100
0
70
37
17
20
25
1.94
104355699--104355773
30
2.6
29
76
17
75
62
0
1
36
1.04
104356251--104356359
19
5.9
19
87
6
154
37
15
11
35
1.83
104356251--104356351
18
5.6
18
88
4
141
36
15
11
35
1.85
104356253--104356367
36
3.2
36
76
17
114
38
13
12
35
1.83
104356722--104357426
205
3.4
205
94
0
1187
29
21
17
31
1.96
104357423--104357507
44
1.9
44
87
0
125
24
25
18
30
1.98
104358534--104358601
7
9.7
7
81
15
70
2
11
1
83
0.82
104358540--104358611
8
8.8
8
82
13
69
2
12
0
84
0.72
104358541--104358600
20
3.0
20
90
2
93
3
11
0
85
0.72
104365615--104365749
7
19.4
7
66
22
54
56
0
5
37
1.24
104365681--104365792
21
5.6
20
65
15
61
58
0
3
36
1.21
104365765--104365795
12
2.5
13
89
10
55
64
0
0
35
0.94
104365768--104365833
17
4.0
16
76
7
60
62
1
3
33
1.20
104365884--104365926
18
2.3
19
80
4
52
58
4
4
32
1.39
104367299--104367568
83
3.2
83
85
1
351
28
19
18
32
1.96
104367492--104367845
119
3.0
119
93
1
586
30
19
16
33
1.94
104373686--104373725
19
2.1
19
86
9
55
42
5
20
32
1.73
104377660--104377789
7
18.6
7
67
20
58
56
0
5
37
1.22
104377724--104377790
21
3.1
21
75
10
64
61
0
2
35
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104377734--104377859
21
5.5
21
69
23
60
59
0
2
37
1.16
104377807--104377837
12
2.5
13
89
10
55
64
0
0
35
0.94
104377804--104377884
21
4.1
19
73
17
76
65
1
2
30
1.13
104377927--104377969
18
2.3
19
80
4
52
58
4
2
34
1.32
104385532--104385694
18
8.9
18
81
6
170
38
14
10
36
1.81
104385532--104385694
35
4.5
36
84
5
213
38
14
10
36
1.81
104386095--104386203
42
2.6
42
82
0
137
32
15
34
17
1.91
104386841--104386881
21
2.0
21
95
0
73
21
0
26
51
1.48
104387020--104387119
42
2.4
42
86
0
137
36
14
33
17
1.89
104389488--104389527
19
2.1
19
100
0
80
30
5
5
60
1.40
104393032--104393078
21
2.2
21
92
0
76
21
4
2
72
1.12
104393236--104393302
9
7.1
9
71
25
50
40
0
0
59
0.97
104393244--104393302
20
2.9
21
82
10
77
40
0
0
59
0.97
104393239--104393302
28
2.2
28
84
13
78
39
0
0
60
0.97
104393245--104393323
38
2.1
38
86
11
108
43
0
2
54
1.14
104394693--104394744
26
2.0
26
100
0
104
15
15
0
69
1.20
104394696--104394753
26
2.2
26
90
0
89
17
8
1
72
1.18
104395848--104395880
17
1.9
17
93
0
57
54
3
0
42
1.15
104398186--104398242
17
3.5
15
84
15
53
38
10
15
35
1.82
104398186--104398264
36
2.1
38
90
9
126
37
10
16
35
1.82
104398186--104398264
19
4.2
19
90
9
126
37
10
16
35
1.82
104398649--104398700
19
3.2
15
78
21
52
36
7
3
51
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104399863--104399910
17
2.5
20
83
12
66
29
0
2
68
1.01
104399851--104399918
18
3.7
18
79
11
75
33
0
1
64
1.02
104399865--104399918
27
2.0
28
82
10
69
29
0
1
68
1.00
104407901--104407956
26
2.2
26
100
0
112
30
7
26
35
1.83
104417267--104417300
17
2.0
17
100
0
68
41
11
5
41
1.66
104419485--104419849
46
8.0
46
88
1
473
40
13
23
21
1.89
104419488--104419834
183
1.9
184
86
3
493
41
13
23
21
1.88
104419485--104419866
137
2.8
137
82
5
457
41
13
23
21
1.89
104425146--104425253
26
4.2
26
93
0
189
30
6
26
36
1.82
104428153--104428185
17
2.0
17
94
5
59
48
0
15
36
1.45
104430163--104430214
20
2.7
19
79
5
59
63
1
3
30
1.23
104432394--104432550
28
5.9
27
68
12
85
47
0
12
40
1.41
104434277--104434435
52
3.0
52
83
4
194
27
15
25
30
1.96
104440512--104440555
23
1.9
23
100
0
88
27
11
13
47
1.77
104440969--104441032
17
3.8
17
76
12
53
0
28
4
67
1.11
104443329--104443434
27
4.0
26
73
8
88
48
0
8
43
1.33
104443333--104443437
53
2.0
53
90
0
165
46
0
8
44
1.34
104444256--104444763
168
3.0
167
84
5
693
12
22
18
46
1.82
104446465--104446500
7
5.0
7
86
6
54
66
0
2
30
1.06
104446465--104446500
15
2.5
14
86
8
54
66
0
2
30
1.06
104446518--104446590
10
7.2
10
73
18
62
60
0
5
34
1.20
104448493--104449393
44
20.5
44
86
3
1138
29
26
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104454532--104454575
22
2.0
23
95
4
81
38
25
18
18
1.92
104454766--104454860
28
3.6
24
78
13
75
45
32
5
16
1.70
104454780--104454863
28
3.0
28
91
1
132
46
30
3
19
1.66
104460405--104460464
30
2.0
30
96
0
111
16
25
16
41
1.89
104464656--104464680
12
2.1
12
100
0
50
20
32
16
32
1.94
104468452--104468574
19
6.7
19
91
7
200
39
11
13
36
1.80
104468452--104468574
55
2.2
54
91
5
203
39
11
13
36
1.80
104468458--104468574
36
3.2
36
96
2
207
39
11
11
36
1.79
104471683--104471712
13
2.3
13
100
0
60
76
0
6
16
0.99
104472338--104472400
24
2.6
24
77
18
67
63
4
1
30
1.24
104472352--104472400
27
1.9
24
88
12
71
63
6
2
28
1.30
104472648--104472700
26
2.0
28
81
7
65
58
9
5
26
1.52
104472758--104472839
38
2.3
35
80
12
94
54
6
7
31
1.52
104472778--104472865
20
4.5
20
67
22
62
52
5
10
31
1.59
104472769--104472895
58
2.2
56
77
16
132
53
5
7
33
1.53
104472842--104472897
20
2.8
19
71
15
51
57
3
7
32
1.43
104473234--104473280
22
2.1
22
92
7
78
59
2
2
36
1.21
104475156--104475239
26
3.2
26
96
0
150
33
4
25
36
1.77
104484602--104484680
19
4.4
17
71
22
54
81
0
13
5
0.86
104484605--104484679
28
2.7
29
79
10
84
80
0
14
5
0.89
104484633--104484682
14
3.6
14
77
15
50
80
0
10
10
0.92
104485628--104486323
84
8.3
84
90
3
1066
29
22
22
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104485627--104486323
334
2.1
331
90
4
1096
29
22
22
24
1.99
104486139--104486276
41
3.3
41
69
13
120
30
21
21
26
1.98
104486713--104486769
8
6.9
8
81
15
55
84
0
14
1
0.71
104486713--104486768
21
2.7
21
83
5
78
83
0
14
1
0.72
104486713--104486767
14
3.9
14
86
6
76
83
0
14
1
0.73
104487928--104488044
27
4.3
27
80
8
139
27
24
7
40
1.82
104487928--104488044
54
2.2
54
86
6
157
27
24
7
40
1.82
104488043--104488200
27
5.8
26
79
10
147
39
20
10
28
1.86
104488043--104488200
55
2.9
55
82
5
189
39
20
10
28
1.86
104488076--104488216
27
5.2
26
79
10
115
42
20
8
28
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333