genome.fa.s5.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  100  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31767662--31767702	20	2.0	20	95	0	73	48	2	17	31	1.60
31768864--31768913	10	5.0	10	79	13	50	24	6	2	68	1.23
31768883--31768921	20	2.0	20	84	0	51	25	2	5	66	1.25
31770257--31770367	51	2.2	52	90	1	170	27	21	6	44	1.76
31772984--31773125	60	2.3	60	82	8	164	27	25	18	28	1.98
31772988--31773086	28	3.4	28	68	22	69	26	28	18	27	1.98
31773115--31773154	20	2.0	20	90	0	62	27	27	20	25	1.99
31776108--31776165	25	2.3	25	87	0	80	43	17	24	15	1.87
31779459--31779519	30	2.0	30	100	0	122	40	13	13	32	1.82
31783152--31783217	31	2.1	31	94	0	114	43	10	16	28	1.81
31783740--31783805	33	2.0	33	96	0	123	34	15	28	21	1.93
31785145--31785198	29	1.9	27	88	7	81	70	0	0	29	0.88
31789784--31789838	23	2.4	23	93	0	92	14	50	1	32	1.53
31791276--31791317	22	1.9	22	90	0	66	47	11	11	28	1.76
31802872--31803029	10	16.2	10	67	16	55	60	3	1	34	1.23
31802946--31803018	9	7.9	9	76	11	76	64	2	1	31	1.16
31803445--31803495	20	2.5	20	84	12	68	23	1	0	74	0.92
31803526--31803638	28	4.2	25	76	18	88	35	0	1	61	1.12
31803473--31803655	27	6.8	27	74	15	132	33	1	1	63	1.11
31803552--31803690	16	8.2	16	74	12	73	33	0	2	64	1.05
31803445--31803690	9	27.8	9	68	19	101	31	1	1	65	1.10
31809580--31809629	6	8.2	6	80	12	57	54	14	16	16	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31809609--31809719	45	2.5	45	87	0	159	42	15	19	22	1.89
31809697--31809721	12	2.1	12	100	0	50	40	20	24	16	1.91
31809930--31810015	40	2.2	40	86	0	118	39	16	10	33	1.83
31810791--31810827	17	2.1	17	90	10	56	16	5	2	75	1.10
31814090--31814143	15	3.5	15	75	9	56	46	9	3	40	1.54
31815334--31815374	21	2.0	21	90	0	64	78	4	14	2	1.03
31818647--31818728	41	2.0	41	100	0	164	19	12	9	58	1.61
31818737--31818770	2	17.0	2	93	0	59	47	0	2	50	1.16
31821499--31821529	16	1.9	16	93	0	53	64	3	0	32	1.09
31821607--31821656	27	1.9	27	88	8	77	40	6	4	50	1.46
31823813--31823863	21	2.4	21	93	0	84	43	7	15	33	1.76
31824294--31824370	40	1.9	40	94	0	136	27	25	23	23	2.00
31826385--31826492	44	2.4	44	85	3	135	28	23	14	33	1.94
31829627--31829755	44	2.8	45	82	4	152	34	13	24	27	1.93
31836986--31837114	44	2.8	45	82	4	152	34	13	24	27	1.93
31842599--31842706	44	2.4	44	87	3	144	29	23	13	33	1.93
31847853--31847960	44	2.4	44	85	3	135	28	23	14	33	1.94
31853758--31853884	59	2.2	59	88	0	182	33	7	7	51	1.56
31853773--31853898	59	2.1	59	80	0	135	37	8	6	47	1.60
31855081--31855186	29	3.7	29	81	0	104	33	17	4	44	1.70
31855210--31855243	15	2.3	15	89	0	50	61	20	2	14	1.46
31855238--31855308	30	2.4	29	81	11	83	36	19	0	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31855781--31855822	13	3.2	13	82	3	57	42	0	2	54	1.13
31856174--31856268	46	2.1	45	92	3	156	57	8	12	21	1.61
31859241--31859294	20	2.7	20	91	8	83	29	7	20	42	1.79
31859722--31859787	30	2.2	31	89	8	100	60	9	3	27	1.42
31859846--31859871	11	2.4	11	100	0	52	61	0	30	7	1.24
31861123--31861172	23	2.1	24	92	3	84	44	6	32	18	1.74
31863787--31863814	12	2.3	12	100	0	56	46	21	25	7	1.76
31863883--31863947	25	2.6	25	95	0	112	15	23	35	26	1.94
31864182--31864369	62	3.0	63	72	16	183	41	3	5	49	1.43
31868980--31869060	36	2.3	36	95	2	146	46	3	29	19	1.67
31872878--31872920	20	2.1	21	82	4	52	13	2	34	48	1.56
31875541--31875611	35	2.0	35	100	0	142	30	5	35	28	1.80
31878388--31878441	6	9.0	6	93	0	72	38	42	0	18	1.50
31878790--31878859	35	2.0	35	100	0	140	20	31	5	42	1.75
31880604--31880637	17	2.0	17	88	11	52	52	17	17	11	1.73
31881484--31881544	29	2.1	29	100	0	122	47	4	9	37	1.58
31881890--31881952	31	2.0	31	90	0	99	41	3	0	55	1.16
31881890--31881976	31	2.8	31	81	8	90	41	2	1	55	1.20
31892948--31893165	41	5.3	41	86	3	142	36	21	23	18	1.95
31892978--31893321	41	8.4	41	86	2	433	34	23	22	19	1.97
31893479--31893530	14	3.7	14	76	0	50	28	0	23	48	1.51
31893492--31893573	21	3.7	21	73	12	83	29	1	25	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31893557--31893591	14	2.5	14	90	0	52	34	0	25	40	1.56
31893639--31893748	14	7.7	14	65	8	53	20	0	40	38	1.58
31893676--31893749	7	10.3	7	74	8	60	18	1	43	36	1.59
31893666--31893709	21	2.1	21	83	8	54	18	0	43	38	1.50
31893676--31893749	21	3.4	21	71	12	69	18	1	43	36	1.59
31895147--31895176	6	5.0	6	91	0	51	16	63	0	20	1.31
31895137--31895175	18	2.2	18	90	0	60	17	56	2	23	1.53
31895144--31895176	12	2.8	12	95	0	57	18	60	0	21	1.36
31897026--31897066	19	2.2	19	86	4	57	21	2	4	70	1.18
31897569--31897615	22	2.1	22	100	0	94	38	21	4	36	1.73
31899439--31899504	16	4.0	17	86	5	57	56	7	0	36	1.28
31899459--31899501	2	21.5	2	90	0	68	51	4	0	44	1.22
31900300--31900375	3	25.3	3	97	0	143	68	0	0	31	0.90
31902336--31902799	73	6.5	73	85	7	503	31	19	18	31	1.95
31902392--31902923	212	2.6	212	81	9	561	31	20	18	30	1.96
31902685--31902933	128	1.9	128	86	7	349	28	21	18	31	1.97
31914881--31914929	17	2.8	17	84	9	55	59	8	0	32	1.27
31914901--31914937	2	18.5	2	88	0	56	51	5	0	43	1.24
31915545--31915628	28	2.9	30	80	15	79	59	3	5	30	1.38
31915563--31915622	33	1.9	33	86	10	90	63	3	1	31	1.20
31915563--31915633	16	4.8	15	77	17	69	61	4	2	30	1.29
31915784--31915839	3	19.0	3	92	3	96	66	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31918072--31918162	47	2.0	45	95	4	164	15	12	12	60	1.59
31926614--31926785	86	2.0	86	95	0	308	34	17	18	29	1.94
31928551--31928605	24	2.3	24	100	0	110	49	3	25	21	1.66
31931882--31932030	42	3.5	42	72	14	117	23	21	23	31	1.98
31932995--31933129	27	5.0	27	82	9	168	34	20	25	19	1.96
31933075--31933147	22	3.1	22	73	17	74	34	21	24	19	1.96
31933022--31933151	54	2.5	51	85	9	160	33	21	26	18	1.96
31933563--31933599	8	4.6	8	86	0	56	5	24	18	51	1.67
31934774--31934881	52	2.1	52	92	0	180	34	22	9	34	1.86
31934774--31934881	26	4.2	26	86	0	153	34	22	9	34	1.86
31940130--31940283	27	5.7	27	73	10	118	33	20	25	21	1.97
31940144--31940284	54	2.6	54	86	4	187	34	21	24	19	1.96
31941906--31942013	26	4.2	26	92	2	182	35	24	8	32	1.85
31972296--31972344	19	2.5	19	93	3	80	51	0	4	44	1.20
31976777--31976801	2	12.5	2	100	0	50	48	0	0	52	1.00
31978123--31978246	66	1.9	63	87	8	178	43	7	11	37	1.68
31978832--31978869	2	19.5	2	94	5	69	50	0	0	50	1.00
31982022--31982074	20	2.7	20	88	5	72	26	20	20	32	1.98
31984232--31984294	30	2.1	30	82	11	76	47	3	0	49	1.17
31984415--31984473	3	19.7	3	100	0	118	66	0	0	33	0.92
31984761--31984823	29	2.2	29	86	8	85	31	1	3	63	1.19
31992530--31992579	26	2.0	24	88	7	73	64	6	0	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31992558--31992608	21	2.4	21	83	6	59	70	7	1	19	1.21
31998911--31999144	39	5.9	39	84	1	117	29	26	23	20	1.98
31998957--31999142	39	4.7	39	87	1	246	27	26	25	20	1.99
31998957--31999144	79	2.4	78	81	1	250	27	26	25	20	1.99
31999177--31999225	24	2.0	24	100	0	98	42	28	0	28	1.56
31999850--32000010	48	3.4	48	87	0	214	34	30	12	22	1.91
31999895--32000010	24	4.8	24	97	0	205	36	31	12	18	1.89
32001186--32001219	17	2.0	17	94	0	59	38	5	0	55	1.24
32004404--32004446	19	2.3	19	92	4	70	11	25	11	51	1.72
32017631--32017765	50	2.7	50	82	0	171	19	19	31	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335