genome.fa.s5.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  142  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41725563--41725614	23	2.3	22	80	12	61	17	11	5	65	1.44
41725822--41725858	18	2.1	19	90	10	60	64	0	10	24	1.25
41733651--41733933	27	10.6	27	84	3	311	42	16	13	27	1.86
41733651--41733933	54	5.3	54	83	3	347	42	16	13	27	1.86
41736881--41736930	20	2.8	17	77	16	55	52	2	4	42	1.31
41736921--41736991	36	2.0	35	81	13	83	53	5	2	38	1.39
41741847--41742054	40	5.2	39	84	1	218	25	25	22	25	2.00
41741847--41742052	80	2.6	81	84	3	247	25	26	22	25	2.00
41746751--41746829	34	2.2	36	84	10	101	29	6	2	62	1.33
41746972--41747021	20	2.5	20	81	15	66	50	10	12	28	1.71
41748478--41748531	20	2.7	21	80	8	60	61	1	1	35	1.18
41750170--41750204	17	2.1	17	94	0	61	62	0	2	34	1.10
41752002--41752047	5	9.4	5	95	4	85	41	0	0	58	0.98
41753197--41753300	47	2.2	48	82	5	131	16	18	24	41	1.90
41753501--41753608	36	3.0	36	83	1	119	36	7	14	41	1.74
41753504--41753618	18	6.3	18	75	4	106	33	7	15	42	1.76
41759118--41759224	47	2.3	47	85	0	133	16	18	22	42	1.89
41759212--41759242	6	5.2	6	96	0	53	16	19	16	48	1.81
41759434--41759539	18	5.9	18	74	5	81	33	7	16	42	1.76
41759434--41759539	36	3.0	36	81	1	106	33	7	16	42	1.76
41759463--41759539	35	2.2	36	83	2	93	35	7	16	40	1.78
41772093--41772157	32	2.0	32	85	5	87	44	26	13	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41772886--41772973	27	3.3	27	73	10	81	30	12	14	42	1.83
41772928--41773082	27	5.8	27	76	3	143	31	9	18	40	1.83
41772900--41773091	27	7.1	27	73	7	131	30	10	19	39	1.86
41782758--41782822	26	2.5	26	97	0	121	20	38	23	18	1.93
41783956--41783999	21	2.1	21	82	0	52	27	29	29	13	1.94
41788920--41788959	16	2.6	16	88	4	55	22	2	2	72	1.09
41794942--41795092	40	3.8	40	82	6	173	26	21	27	24	2.00
41794978--41795108	40	3.3	40	83	4	167	24	21	26	27	1.99
41802123--41802273	40	3.8	40	82	6	173	26	21	27	24	2.00
41802159--41802289	40	3.3	40	83	4	167	24	21	26	27	1.99
41804623--41804840	40	5.5	40	87	4	291	25	22	26	25	2.00
41806247--41806310	28	2.3	27	94	2	110	29	7	28	34	1.85
41816146--41816210	28	2.3	28	92	5	105	33	29	7	29	1.85
41816316--41816406	28	3.2	28	90	1	128	19	23	24	32	1.97
41816316--41816431	56	2.1	55	80	6	126	18	23	22	35	1.96
41821040--41821074	3	11.7	3	100	0	70	34	0	0	65	0.93
41822719--41822757	3	13.3	3	89	5	62	71	0	28	0	0.86
41827946--41828010	28	2.3	28	86	0	94	38	9	23	29	1.85
41828083--41828304	39	5.7	39	89	2	322	18	21	29	30	1.97
41828083--41828294	77	2.7	78	89	2	320	18	21	29	30	1.97
41828083--41828294	116	1.8	116	89	2	336	18	21	29	30	1.97
41837319--41837375	9	6.4	9	77	4	62	26	12	0	61	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41837316--41837352	18	2.1	18	100	0	74	27	5	0	67	1.12
41838944--41838993	6	8.3	6	93	0	82	14	2	2	82	0.86
41842440--41842502	31	2.0	31	100	0	126	46	15	9	28	1.78
41846219--41846385	21	8.0	21	73	7	133	17	22	14	46	1.84
41846219--41846378	42	3.8	42	82	3	169	17	21	14	46	1.83
41846219--41846393	63	2.8	63	86	1	199	18	22	13	45	1.84
41856788--41856836	24	2.0	24	96	0	89	40	6	26	26	1.79
41861209--41861243	18	2.0	18	88	5	54	68	0	0	31	0.90
41861496--41861553	22	2.7	21	76	10	53	41	15	5	37	1.70
41861525--41861612	36	2.4	36	82	14	126	35	13	11	39	1.81
41861534--41861604	19	3.8	19	92	7	128	36	14	11	38	1.81
41861535--41861623	36	2.5	36	85	7	101	37	12	11	39	1.79
41861937--41862087	44	3.4	45	80	7	166	27	27	11	32	1.92
41862107--41862320	78	2.7	78	89	0	329	25	24	18	31	1.98
41867915--41868099	40	4.6	40	91	0	289	23	29	22	24	1.99
41876973--41877071	28	3.5	28	81	9	112	29	25	16	29	1.96
41884652--41884750	28	3.5	28	81	9	112	29	25	16	29	1.96
41891633--41891723	28	3.2	28	88	1	128	32	24	23	19	1.97
41891832--41891893	28	2.2	28	91	5	99	29	8	29	33	1.86
41893163--41893209	24	2.0	24	91	0	76	21	36	4	38	1.73
41902465--41902491	9	3.0	9	100	0	54	33	0	22	44	1.53
41902750--41902809	29	2.1	29	100	0	120	30	13	10	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41903097--41903211	20	5.8	20	73	4	88	10	29	21	38	1.87
41917387--41917535	42	3.5	42	96	0	271	30	14	32	21	1.94
41917544--41917613	27	2.5	28	88	2	106	28	14	25	31	1.95
41922749--41922792	22	2.0	22	100	0	88	36	13	22	27	1.92
41923744--41923818	29	2.6	31	85	12	106	37	12	29	21	1.89
41927894--41927933	13	3.1	13	88	0	62	17	30	35	17	1.93
41929710--41929743	17	1.9	17	88	5	50	35	0	0	64	0.94
41934722--41934896	46	3.8	46	82	8	230	20	21	29	29	1.98
41934718--41934888	92	1.9	92	94	0	306	19	21	30	28	1.98
41940822--41940988	40	4.2	40	81	6	178	26	21	26	25	1.99
41948016--41948166	40	3.8	40	82	6	173	26	21	27	24	2.00
41948052--41948182	40	3.3	40	83	4	167	24	21	26	27	1.99
41957711--41957745	19	1.9	17	88	11	52	22	0	25	51	1.48
41959385--41959475	31	3.0	29	76	13	85	45	12	12	30	1.78
41959785--41959839	23	2.5	22	80	16	60	38	14	7	40	1.74
41963457--41963512	30	1.9	28	85	7	76	50	0	0	50	1.00
41967898--41967935	20	2.1	19	85	14	53	76	0	15	7	1.01
41969242--41969344	29	3.6	29	81	2	118	23	16	32	28	1.96
41975968--41976005	20	2.1	19	85	14	53	76	0	15	7	1.01
41977313--41977415	29	3.6	29	81	2	118	23	16	32	28	1.96
41984035--41984073	21	2.0	20	85	14	55	76	0	15	7	0.99
41985377--41985479	29	3.6	29	81	2	118	23	16	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41997457--41997509	25	2.1	25	93	6	90	32	9	5	52	1.57
42017464--42017533	3	24.7	3	72	18	53	30	4	1	64	1.21
42024416--42024476	30	2.0	30	100	0	122	37	22	6	32	1.80
42031540--42031655	36	3.2	36	83	2	144	43	28	12	16	1.83
42037571--42037737	40	4.2	40	79	2	158	23	27	22	26	2.00
42045588--42045754	40	4.2	40	80	2	167	23	27	22	26	1.99
42045604--42045754	80	1.9	79	83	6	198	23	27	22	25	2.00
42049688--42049782	43	2.2	42	81	5	111	26	17	24	31	1.97
42051653--42051688	13	2.9	12	84	8	54	22	13	22	41	1.89
42062372--42062473	43	2.4	41	80	9	123	29	13	23	33	1.93
42064031--42064215	40	4.6	40	88	0	262	24	27	22	25	2.00
42069345--42069414	35	2.0	35	100	0	140	48	22	5	22	1.72
42073172--42073321	27	5.5	27	75	10	117	42	20	12	24	1.86
42073172--42073321	55	2.8	55	86	4	189	42	20	12	24	1.86
42080014--42080183	39	4.3	39	90	0	259	22	26	18	32	1.97
42087021--42087241	38	5.7	40	85	7	269	27	26	20	25	1.99
42087021--42087241	78	2.8	79	85	7	283	27	26	20	25	1.99
42095110--42095292	39	4.7	40	86	8	218	27	26	21	24	1.99
42095110--42095292	79	2.3	80	85	7	241	27	26	21	24	1.99
42099364--42099531	39	4.3	39	90	0	264	22	25	20	31	1.98
42128101--42128218	31	3.5	35	89	9	135	22	23	16	37	1.94
42128124--42128218	31	3.1	31	98	0	181	23	22	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42128410--42128552	24	6.0	24	91	4	209	26	22	22	28	1.99
42128410--42128551	47	3.0	48	90	5	207	26	22	22	28	1.99
42128409--42128552	71	2.0	72	89	4	220	26	22	22	29	1.99
42128603--42128662	20	3.0	20	90	0	102	33	20	11	35	1.88
42128705--42128752	25	1.9	25	86	0	69	25	16	25	33	1.96
42129910--42129974	27	2.4	27	84	5	87	20	24	20	35	1.96
42130090--42130176	27	3.2	27	77	8	79	27	8	25	39	1.84
42130153--42130473	27	11.9	27	87	3	405	39	9	23	27	1.85
42130397--42130675	27	10.4	27	83	4	226	32	8	21	36	1.84
42133373--42133490	31	3.5	35	89	9	135	22	23	16	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335