Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  114  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35071832--35071890
3
20.7
3
76
10
61
66
0
33
0
0.92
35071839--35071887
17
2.9
17
84
3
64
67
0
32
0
0.91
35072452--35072970
150
3.5
149
88
4
767
57
5
7
30
1.49
35072800--35072838
21
2.0
21
90
10
64
74
0
12
12
1.08
35074054--35074089
18
2.1
17
89
5
54
30
0
0
69
0.89
35074049--35074122
23
3.3
23
77
7
71
36
1
0
62
1.04
35074056--35074131
20
3.9
19
73
13
57
32
2
0
64
1.07
35074117--35074196
39
2.0
40
85
2
108
25
2
7
65
1.32
35075200--35075338
72
1.9
72
86
2
199
22
25
17
34
1.95
35075875--35075913
17
2.3
17
91
8
62
46
10
10
33
1.72
35079111--35079146
15
2.3
16
90
9
65
16
19
16
47
1.83
35080081--35080159
39
1.9
39
85
7
104
70
13
1
13
1.22
35080186--35080249
20
3.2
20
73
8
58
0
31
0
68
0.90
35081744--35081824
38
2.1
38
86
4
110
29
17
3
49
1.64
35082129--35082163
17
1.9
17
88
11
52
34
0
0
65
0.93
35082129--35082168
19
2.0
19
85
9
53
37
0
0
62
0.95
35095237--35095305
32
2.2
32
81
5
77
43
2
5
47
1.42
35098877--35098925
23
2.1
24
84
3
64
53
8
8
30
1.60
35103552--35103596
13
3.4
13
81
6
54
53
0
2
44
1.13
35103545--35103602
27
2.1
29
90
6
93
50
0
1
48
1.11
35104765--35104805
20
2.2
19
83
16
50
41
0
2
56
1.13
35106536--35106591
16
3.5
16
90
0
85
37
7
26
28
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35106572--35106665
44
2.1
44
86
4
125
31
5
27
35
1.79
35106837--35106869
17
1.9
17
100
0
66
63
0
0
36
0.95
35107379--35107413
18
1.9
18
94
0
61
34
20
14
31
1.92
35107421--35107665
40
6.1
40
90
0
364
33
16
9
40
1.81
35107417--35107665
120
2.1
120
93
0
426
32
16
9
40
1.81
35111663--35111777
44
2.6
44
85
2
149
35
13
22
27
1.92
35111663--35111796
46
3.0
45
82
4
153
35
14
23
26
1.93
35117809--35117923
44
2.6
44
85
2
149
35
13
22
27
1.92
35117809--35117942
46
3.0
45
82
4
153
35
14
23
26
1.93
35124076--35124270
9
20.7
9
69
14
81
63
2
4
30
1.27
35124072--35124105
10
3.3
10
88
8
50
64
0
0
35
0.94
35124077--35124102
11
2.4
11
100
0
52
76
0
0
23
0.78
35124076--35124233
76
2.1
76
82
9
189
62
3
4
29
1.30
35124142--35124205
19
3.4
19
70
10
51
68
3
6
21
1.26
35124190--35124279
29
3.1
27
78
10
90
60
1
5
33
1.27
35124144--35124279
10
14.2
10
72
13
56
63
2
5
28
1.27
35124467--35124520
26
2.0
27
89
10
85
38
1
1
57
1.20
35124512--35124556
18
2.5
18
82
7
56
48
0
0
51
1.00
35124477--35124582
47
2.3
46
82
8
117
40
0
0
57
1.11
35124520--35124572
27
2.0
25
85
7
70
45
0
0
54
0.99
35124610--35124778
85
2.0
84
80
3
187
31
10
20
37
1.86
35128750--35128788
16
2.4
16
95
0
69
28
25
7
38
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35129416--35129465
23
2.1
24
85
3
66
58
2
2
38
1.21
35130761--35130802
3
14.0
3
100
0
84
66
0
0
33
0.92
35134854--35134918
18
3.7
18
76
17
73
69
1
0
29
0.98
35141679--35141746
34
2.0
35
88
8
104
63
2
1
32
1.18
35142177--35142242
26
2.5
26
95
4
116
28
19
10
40
1.85
35147187--35147405
111
2.0
111
100
0
438
35
12
10
42
1.77
35149698--35149731
16
2.1
17
88
5
52
38
8
14
38
1.78
35152067--35152138
23
3.1
23
66
18
67
47
12
6
33
1.68
35158590--35158616
13
2.1
13
100
0
54
48
7
7
37
1.59
35158657--35158691
14
2.5
14
90
0
52
51
5
8
34
1.56
35158678--35158723
19
2.3
20
92
3
76
28
13
13
45
1.80
35161237--35161284
25
1.9
25
86
0
69
35
22
16
25
1.95
35161328--35161386
20
3.0
20
97
0
109
35
11
20
32
1.89
35161332--35161386
11
5.4
11
70
16
55
36
12
20
30
1.90
35161437--35161604
24
7.0
24
91
2
266
27
22
21
28
1.99
35164774--35164924
59
2.5
60
80
9
139
42
15
5
35
1.72
35167549--35167594
24
2.0
23
82
4
56
28
17
30
23
1.97
35176162--35176190
5
5.8
5
100
0
58
58
0
0
41
0.98
35178761--35178795
17
2.1
17
94
0
61
20
22
2
54
1.58
35181356--35181404
23
2.1
23
88
0
71
24
16
26
32
1.96
35181829--35182199
43
8.6
43
84
4
435
30
29
15
23
1.96
35181829--35182199
130
2.9
128
82
4
460
30
29
15
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35185894--35186012
41
2.9
40
80
9
125
31
20
15
32
1.93
35186125--35186159
16
2.1
17
94
5
63
31
0
0
68
0.90
35186799--35186840
21
2.0
21
90
0
66
40
30
4
23
1.75
35187188--35187414
7
31.7
7
70
11
75
43
34
1
20
1.60
35187225--35187419
14
13.7
14
72
13
94
46
30
1
21
1.60
35187717--35187902
40
4.7
40
83
4
169
28
22
19
29
1.98
35187956--35188046
40
2.3
40
78
3
94
35
21
15
27
1.94
35187759--35188054
80
3.8
77
72
11
235
30
22
19
27
1.98
35188096--35188242
40
3.7
40
82
0
177
28
18
21
31
1.97
35187793--35188207
146
2.8
146
81
4
463
30
21
19
29
1.97
35188294--35188397
40
2.6
40
89
0
145
29
22
19
28
1.98
35187956--35188401
194
2.4
186
81
5
477
30
20
19
29
1.97
35188445--35188573
40
3.2
40
88
0
195
23
22
22
31
1.98
35188134--35188552
155
2.7
154
87
0
577
28
20
21
29
1.98
35188931--35188966
14
2.6
14
100
0
72
36
8
5
50
1.56
35190078--35190141
31
2.1
31
100
0
128
39
14
18
28
1.90
35191943--35192097
41
3.8
40
79
14
149
32
24
15
27
1.95
35191943--35192122
81
2.2
83
81
5
215
33
25
15
26
1.95
35191942--35192120
40
4.4
40
74
15
136
32
25
15
26
1.96
35197084--35197115
13
2.3
15
89
10
50
18
34
9
37
1.83
35197718--35197778
31
2.0
31
100
0
122
16
36
18
29
1.92
35199406--35199507
41
2.5
42
83
6
127
29
30
15
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35199407--35199596
83
2.3
83
81
9
212
32
26
15
25
1.95
35199429--35199588
41
3.9
41
76
11
150
31
26
15
26
1.95
35207677--35207740
30
2.1
30
82
5
76
42
12
7
37
1.72
35209979--35210155
37
4.8
37
96
0
309
25
31
19
23
1.98
35210274--35210578
48
6.4
48
98
0
565
31
28
6
33
1.82
35214804--35214843
14
2.7
15
84
7
55
35
5
2
57
1.34
35214911--35214955
23
2.0
23
90
0
72
33
4
8
53
1.52
35218569--35218826
129
2.0
129
97
0
489
30
17
17
34
1.93
35220259--35220289
6
5.2
6
96
0
53
51
45
0
3
1.17
35223329--35223382
20
2.7
21
78
13
60
40
0
1
57
1.09
35231280--35231305
11
2.4
11
100
0
52
76
0
7
15
0.99
35231355--35231418
10
6.4
10
77
12
60
64
1
0
34
1.03
35231525--35231554
15
2.1
14
93
6
51
20
3
0
76
0.92
35231683--35231759
29
2.7
28
76
9
68
33
3
1
61
1.23
35231767--35231974
90
2.3
90
80
8
226
31
8
22
37
1.85
35233513--35233563
26
2.0
26
92
0
84
45
3
5
45
1.46
35236054--35236092
20
1.9
21
89
5
62
25
28
17
28
1.98
35240248--35240385
64
2.2
64
94
0
240
39
16
21
22
1.92
35245062--35245188
42
3.0
42
85
6
161
29
25
13
30
1.94
35245147--35245270
47
2.7
46
83
5
151
29
26
14
29
1.95
35245288--35245404
31
3.8
31
94
1
191
27
28
19
24
1.99
35245381--35245556
50
3.5
50
89
4
266
26
23
16
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35249355--35249406
26
2.0
26
92
0
86
57
0
3
38
1.17
35249360--35249413
26
2.2
26
86
6
76
61
0
3
35
1.14
35249369--35249432
32
2.0
32
84
0
83
57
0
4
37
1.19
35249417--35249474
24
2.4
24
83
11
66
65
1
1
31
1.13
35249483--35249538
24
2.3
24
87
6
78
55
3
7
33
1.45
35252678--35252708
16
2.0
15
93
6
53
16
19
0
64
1.29
35254243--35254283
18
2.3
18
91
0
64
24
31
19
24
1.98
35259543--35259616
14
5.0
14
72
20
53
63
0
4
32
1.13
35260424--35260480
24
2.3
25
87
3
80
43
0
3
52
1.18
35260418--35260478
25
2.4
25
76
13
79
44
0
3
52
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335