genome.fa.s5.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  105  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32875066--32875132	3	23.0	3	71	17	52	37	1	0	61	1.05
32875068--32875129	20	3.0	21	75	20	67	38	1	0	59	1.07
32875066--32875134	23	3.0	23	77	18	81	39	1	0	59	1.06
32875379--32875427	3	16.3	3	95	0	89	34	0	0	65	0.93
32875434--32875471	13	2.8	14	84	4	51	76	0	7	15	1.01
32876527--32876639	45	2.5	45	86	2	156	20	17	19	42	1.89
32884716--32884777	27	2.3	27	88	2	99	43	30	4	20	1.73
32885687--32885711	12	2.1	12	100	0	50	76	8	0	16	1.02
32887549--32887854	3	102.7	3	75	12	224	31	3	3	61	1.29
32887868--32887919	2	26.5	2	82	3	61	42	1	3	51	1.31
32887975--32888014	11	3.6	11	89	0	62	37	0	7	55	1.29
32887986--32888052	13	5.4	13	76	13	52	38	1	2	56	1.24
32888196--32888273	30	2.8	28	75	21	74	28	3	0	67	1.07
32888231--32888268	20	1.9	20	84	10	51	26	5	0	68	1.11
32892111--32892163	11	4.7	11	78	2	61	22	22	5	49	1.71
32892109--32892152	22	2.0	22	90	0	70	27	22	4	45	1.72
32893636--32893802	40	4.2	40	81	2	176	24	27	22	25	2.00
32893652--32893802	80	1.9	79	83	6	198	23	27	22	25	2.00
32900308--32900774	232	2.0	232	98	0	909	35	19	21	23	1.96
32903849--32904136	75	3.7	73	80	14	344	31	14	20	33	1.93
32903845--32904409	160	3.4	162	79	12	613	30	15	19	34	1.94
32904205--32904429	80	2.7	80	86	6	272	31	17	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32904343--32904371	14	2.1	14	100	0	58	20	6	6	65	1.40
32906003--32906290	136	2.1	135	86	5	388	30	3	6	58	1.41
32906264--32906351	12	6.9	14	93	5	52	31	0	3	64	1.10
32905885--32906329	3	146.7	3	69	16	158	30	3	5	61	1.33
32906261--32906378	18	6.1	20	88	9	87	34	0	3	61	1.19
32906330--32906383	22	2.5	20	77	13	63	33	1	9	55	1.42
32906763--32906796	14	2.4	14	85	0	50	41	5	5	47	1.52
32909253--32909291	11	3.5	11	78	0	51	20	17	7	53	1.68
32909330--32909390	30	2.0	30	90	0	95	24	6	13	55	1.61
32909512--32909542	11	2.8	11	90	0	53	67	0	0	32	0.91
32917772--32917810	17	2.4	17	83	8	55	35	0	0	64	0.94
32918283--32918316	2	17.0	2	100	0	68	50	0	0	50	1.00
32920639--32920694	17	3.3	17	89	0	94	26	23	14	35	1.93
32927877--32927932	17	3.3	17	87	0	85	26	21	14	37	1.92
32930316--32930348	17	2.1	16	88	11	50	27	0	6	66	1.15
32931246--32931289	18	2.3	19	84	7	54	31	0	0	68	0.90
32931259--32931297	20	1.9	21	94	5	71	25	0	2	71	0.98
32931247--32931300	25	2.2	25	83	6	65	24	0	1	74	0.92
32941162--32941195	4	8.2	4	93	6	59	23	0	0	76	0.79
32941209--32941282	22	3.2	22	78	14	87	43	0	4	52	1.20
32941272--32941326	21	2.6	21	88	8	76	38	1	1	58	1.20
32941689--32941756	24	2.7	25	70	17	59	19	1	4	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32941806--32941839	12	2.8	13	91	8	54	38	0	0	61	0.96
32941825--32941894	23	3.1	23	82	13	76	44	0	1	54	1.09
32941917--32941987	31	2.4	29	88	6	99	35	0	2	61	1.10
32942200--32942238	19	2.1	19	90	9	62	61	0	0	38	0.96
32942200--32942260	31	2.0	31	93	0	104	60	1	0	37	1.07
32942217--32942250	12	2.8	13	91	8	54	61	0	0	38	0.96
32942304--32942442	20	6.8	21	69	21	57	74	2	5	17	1.13
32942736--32942788	17	3.3	17	82	12	60	58	0	1	39	1.09
32942756--32942810	21	2.5	22	88	8	78	58	1	1	38	1.20
32942881--32942930	19	2.6	19	96	3	91	78	0	0	22	0.76
32942881--32942941	5	12.4	5	87	8	81	78	1	1	18	0.91
32945844--32945890	18	2.8	16	81	12	58	63	0	0	36	0.94
32945844--32945890	8	5.6	8	80	16	51	63	0	0	36	0.94
32948154--32948325	93	1.8	93	96	0	317	27	30	22	20	1.98
32948146--32948321	46	3.8	46	81	10	232	28	29	21	20	1.98
32952263--32952501	72	3.3	72	88	1	338	23	7	13	54	1.64
32954508--32954567	13	4.7	13	72	4	59	43	28	1	26	1.65
32957979--32958025	18	2.8	16	81	12	58	63	0	0	36	0.94
32957979--32958025	8	5.6	8	80	16	51	63	0	0	36	0.94
32960283--32960454	93	1.8	93	96	0	317	27	30	22	20	1.98
32960275--32960450	46	3.8	46	81	10	232	28	29	21	20	1.98
32961938--32962239	27	11.3	27	91	1	464	23	20	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32962260--32962678	27	15.6	27	86	0	543	31	8	20	39	1.83
32962269--32962685	54	7.7	54	92	0	656	31	8	20	39	1.83
32965112--32965138	14	1.9	14	100	0	54	11	14	0	74	1.08
32965712--32965767	21	2.7	21	80	0	67	12	25	41	21	1.88
32965861--32965927	21	3.1	21	76	4	80	13	32	28	25	1.93
32978570--32978731	43	3.8	43	82	4	170	28	16	24	30	1.97
32982738--32982774	2	18.5	2	94	0	65	48	0	2	48	1.15
32982949--32982990	22	1.9	22	85	9	59	69	4	2	23	1.20
32982958--32983000	22	2.0	21	86	4	59	67	4	4	23	1.28
32990155--32990260	43	2.5	43	75	9	108	31	16	22	29	1.96
32998941--32998974	16	2.1	16	89	10	52	32	0	0	67	0.91
33000408--33000497	41	2.5	33	73	24	99	50	11	5	33	1.61
33000421--33000489	18	3.2	24	61	26	62	52	11	5	30	1.61
33000420--33000502	41	2.0	41	100	0	166	50	12	4	32	1.60
33000568--33000600	2	16.0	2	93	6	57	48	3	0	48	1.17
33010997--33011044	10	4.8	10	89	0	60	25	10	2	62	1.38
33011761--33011835	39	2.0	36	84	7	96	29	12	2	56	1.49
33017269--33017329	10	6.0	10	84	7	79	22	8	0	68	1.15
33023023--33023082	28	2.1	28	96	0	111	36	30	8	25	1.85
33026959--33026997	7	5.7	7	87	6	62	28	0	0	71	0.86
33026962--33027037	13	5.9	13	73	14	59	25	1	0	73	0.91
33026961--33027002	20	2.2	19	95	4	75	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33026969--33027032	14	4.5	14	79	12	69	23	1	0	75	0.90
33026974--33027039	24	2.7	24	82	15	66	24	1	0	74	0.91
33028433--33028663	100	2.3	99	88	2	322	28	27	19	24	1.98
33028433--33028661	49	4.6	49	84	3	316	28	27	19	24	1.98
33028882--33028935	27	2.0	27	85	0	72	38	12	7	40	1.72
33032023--33032072	26	2.0	24	88	7	73	64	6	0	30	1.18
33032051--33032098	21	2.3	20	82	7	51	70	8	0	20	1.12
33032072--33032136	35	1.9	33	81	12	78	63	9	0	27	1.25
33032409--33032461	10	5.1	10	84	6	61	24	5	0	69	1.09
33032427--33032472	21	2.1	22	84	4	58	28	6	2	63	1.31
33033764--33033853	6	15.0	6	77	13	80	18	3	1	76	0.98
33033776--33033830	28	2.0	27	85	7	74	18	3	1	76	1.02
33033764--33033853	23	4.0	23	73	20	75	18	3	1	76	0.98
33045999--33046193	96	2.0	95	85	1	255	30	12	24	32	1.92
33046838--33046885	10	4.8	10	92	0	69	22	10	2	64	1.35
33047611--33047691	39	2.2	37	88	6	119	24	16	3	55	1.57
33052169--33052199	14	2.2	14	100	0	62	80	0	0	19	0.71
33052706--33052752	20	2.3	20	96	3	85	38	0	10	51	1.37
33054063--33054098	7	5.6	7	84	15	51	30	11	0	58	1.33
33065334--33065411	3	26.0	3	100	0	156	0	33	0	66	0.92
33066707--33066749	20	2.3	19	84	15	54	32	2	2	62	1.20
33068802--33068852	24	2.1	24	82	7	59	19	3	3	72	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33069089--33069113	1	25.0	1	100	0	50	0	0	0	100	0.00
33070124--33070197	31	2.5	31	82	8	82	43	4	6	45	1.49
33070390--33070433	18	2.4	18	96	0	79	52	2	0	45	1.13
33071571--33071611	19	2.2	19	86	0	55	36	9	17	36	1.82
33075269--33075532	46	5.7	46	89	2	352	20	23	15	40	1.91
33075914--33075979	26	2.5	26	95	2	114	40	15	3	40	1.62
33079380--33079458	5	15.4	5	71	23	58	75	0	3	20	0.95
33079363--33079456	25	3.8	24	78	14	93	74	0	4	21	0.99
33079372--33079459	33	2.8	31	85	14	112	75	0	3	21	0.95
33079363--33079443	13	6.2	12	72	20	56	74	0	3	22	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335