genome.fa.s5.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  144  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42426596--42426789	48	4.0	48	94	0	325	36	5	27	31	1.79
42426470--42426721	126	2.0	126	96	0	459	35	6	26	30	1.83
42426422--42426769	174	2.0	174	95	0	624	35	6	27	31	1.82
42426930--42427032	37	2.8	37	90	0	161	25	21	30	23	1.99
42428465--42428598	6	21.8	6	71	15	87	20	17	14	47	1.82
42428455--42428553	31	3.2	31	91	0	153	20	19	14	46	1.84
42428465--42428587	37	3.5	36	80	13	130	20	17	13	47	1.81
42428472--42428589	31	3.6	31	78	12	119	19	17	13	49	1.80
42428496--42428596	37	2.7	37	90	0	157	19	18	13	47	1.82
42430713--42430855	43	3.3	41	79	13	130	34	23	17	24	1.96
42434303--42434327	5	5.0	5	100	0	50	80	0	0	20	0.72
42435306--42435590	70	4.1	70	94	0	498	31	13	16	37	1.88
42435985--42436206	48	4.7	47	78	6	214	28	20	27	23	1.99
42435972--42436208	95	2.5	95	84	2	296	28	19	27	24	1.99
42440199--42440246	22	2.2	21	82	14	53	35	20	2	41	1.64
42440196--42440500	150	2.0	151	85	4	411	40	10	4	43	1.60
42445207--42445251	20	2.2	20	92	0	72	22	22	0	55	1.44
42446496--42446563	30	2.3	30	94	0	118	13	29	29	27	1.94
42451821--42451936	29	4.0	29	80	1	126	27	15	29	27	1.96
42452221--42452275	27	2.1	27	86	3	76	49	21	14	14	1.79
42455475--42455506	14	2.3	14	100	0	64	15	0	28	56	1.40
42460776--42460847	36	2.0	36	100	0	144	41	13	5	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42470713--42470811	28	3.5	28	84	6	112	28	15	26	30	1.96
42477511--42477592	32	2.6	32	94	0	146	26	17	28	28	1.97
42478296--42478338	21	2.0	22	82	13	54	46	18	0	34	1.50
42488868--42489081	39	5.4	40	82	11	257	26	26	22	24	2.00
42488868--42489081	80	2.7	78	82	10	258	26	26	22	24	2.00
42494082--42494230	80	1.9	80	81	2	183	22	30	24	22	1.99
42494123--42494230	40	2.7	38	85	8	128	21	29	25	23	1.99
42496572--42496640	34	2.0	34	97	0	129	23	7	20	49	1.73
42499457--42499562	24	4.5	23	71	12	63	40	17	16	24	1.90
42502127--42502420	47	6.3	47	91	1	473	28	31	9	31	1.88
42502224--42502301	25	3.2	25	65	23	67	30	32	6	30	1.83
42502127--42502420	140	2.1	141	97	1	554	28	31	9	31	1.88
42502387--42502438	24	2.1	25	96	3	97	25	28	17	28	1.97
42502341--42502489	71	2.1	70	91	3	237	27	30	11	30	1.91
42502247--42502583	164	2.1	164	91	2	543	27	30	10	31	1.90
42502362--42502512	70	2.1	71	82	4	180	29	29	8	31	1.87
42502294--42502531	117	2.0	118	99	0	469	28	30	10	30	1.91
42502412--42502586	93	1.9	93	96	2	325	29	29	9	32	1.89
42502412--42502586	47	3.8	47	92	1	291	29	29	9	32	1.89
42506914--42507089	46	3.8	45	81	10	212	21	21	29	28	1.98
42506911--42507081	93	1.8	93	94	0	306	21	21	29	27	1.98
42510585--42510809	47	4.8	49	78	8	193	22	28	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42510589--42510846	46	5.5	46	76	11	197	22	27	19	29	1.98
42515603--42515637	15	2.3	15	100	0	70	22	34	25	17	1.96
42516536--42516592	23	2.3	25	85	8	73	35	21	17	26	1.95
42516533--42516663	24	5.5	23	71	12	86	35	19	19	25	1.95
42516562--42516697	72	1.9	69	84	11	177	33	18	20	27	1.96
42524588--42524621	2	17.5	2	93	6	61	50	0	0	50	1.00
42527592--42527644	9	6.0	9	79	18	58	32	0	0	67	0.91
42527588--42527632	17	2.7	16	83	10	63	33	0	0	66	0.92
42527592--42527642	25	2.0	25	88	7	77	31	0	0	68	0.90
42527601--42527657	26	2.2	25	84	3	69	33	0	1	64	1.04
42528083--42528145	30	2.1	30	93	0	108	57	14	3	25	1.52
42528449--42528491	5	8.6	5	89	0	68	39	2	2	55	1.25
42536230--42536450	40	5.6	40	86	4	297	26	26	22	24	2.00
42544482--42544702	40	5.6	40	86	4	297	26	26	22	24	2.00
42552737--42552957	40	5.6	40	86	4	297	26	26	22	24	2.00
42559144--42559326	49	3.8	48	81	2	213	20	15	33	29	1.94
42559148--42559326	98	1.8	98	87	0	268	20	16	34	29	1.94
42559373--42559403	16	1.9	16	93	0	53	48	16	29	6	1.70
42559927--42559970	2	22.0	2	100	0	88	50	0	0	50	1.00
42561673--42561707	18	1.9	18	94	0	61	62	0	0	37	0.95
42564419--42564449	2	15.5	2	100	0	62	51	0	0	48	1.00
42566378--42566425	22	2.2	22	84	0	60	56	8	0	35	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42567858--42567906	23	2.2	21	82	7	53	53	0	2	44	1.12
42574996--42575094	34	2.9	34	80	5	110	29	13	15	42	1.84
42575340--42575380	21	2.0	21	90	0	64	34	21	12	31	1.91
42577218--42577258	3	13.7	3	100	0	82	68	0	0	31	0.90
42580466--42580506	9	4.3	10	84	9	50	56	4	0	39	1.21
42580479--42580527	19	2.6	19	84	9	64	55	0	6	38	1.25
42580479--42580527	21	2.4	21	86	6	66	55	0	6	38	1.25
42582481--42582782	43	7.0	43	68	9	175	22	21	22	34	1.97
42598185--42598210	13	2.0	13	100	0	52	30	23	7	38	1.83
42601684--42601738	28	2.0	28	96	0	101	47	12	7	32	1.69
42603435--42603558	35	3.6	35	82	3	135	29	12	25	33	1.92
42607740--42607869	40	3.2	40	82	4	165	23	29	24	22	1.99
42614202--42614292	34	2.6	34	85	1	110	30	12	25	31	1.92
42614217--42614331	35	3.3	35	80	6	101	29	12	24	33	1.91
42614237--42614333	35	2.8	35	78	9	108	28	11	24	35	1.90
42615045--42615840	403	2.0	403	94	0	1412	36	11	18	33	1.86
42619450--42619476	5	5.4	5	100	0	54	22	0	0	77	0.76
42623683--42623749	33	2.0	33	100	0	134	37	5	5	50	1.51
42623683--42623770	33	2.7	34	89	3	110	36	4	9	50	1.55
42626582--42626673	45	2.0	45	100	0	184	33	22	10	32	1.89
42629120--42629148	2	14.5	2	100	0	58	48	0	0	51	1.00
42640908--42641041	51	2.9	43	79	10	124	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42643868--42643916	24	2.0	24	96	0	89	40	24	8	26	1.83
42647725--42647776	25	2.0	26	85	10	72	67	1	1	28	1.12
42649352--42649428	22	3.5	23	77	13	65	45	2	1	50	1.23
42649360--42649428	22	3.1	22	79	12	79	46	2	0	50	1.16
42649360--42649428	21	3.1	21	77	12	68	46	2	0	50	1.16
42649365--42649429	20	3.2	20	84	8	60	46	3	0	50	1.17
42649469--42649514	9	4.9	9	82	10	56	36	0	0	63	0.95
42649469--42649515	19	2.5	20	86	10	64	36	0	0	63	0.94
42649499--42649531	14	2.3	15	94	5	59	45	0	0	54	0.99
42649627--42649679	22	2.4	22	100	0	106	58	0	0	41	0.98
42657515--42657640	46	2.7	47	80	10	143	22	19	27	30	1.98
42659345--42659391	24	2.0	24	100	0	94	21	8	29	40	1.83
42662362--42662405	20	2.2	20	85	14	65	29	2	13	54	1.51
42665651--42665694	23	2.0	21	82	8	52	63	2	6	27	1.31
42665739--42665824	26	3.1	27	70	20	77	66	2	5	25	1.26
42665718--42665824	53	2.0	55	81	9	130	64	2	4	28	1.27
42670482--42670547	3	22.0	3	87	0	69	22	0	10	66	1.22
42670481--42670547	12	5.6	12	87	0	80	22	0	11	65	1.25
42670737--42670782	22	2.1	22	100	0	92	34	8	21	34	1.84
42676417--42676468	18	2.9	19	83	16	58	11	11	3	73	1.23
42676470--42676529	5	12.0	5	78	16	54	18	1	1	78	0.92
42676484--42676534	17	3.0	18	86	11	72	23	0	1	74	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42676480--42676529	22	2.3	22	89	6	75	20	0	2	78	0.86
42676504--42676543	17	2.4	17	86	0	53	30	2	0	67	1.04
42676539--42676614	23	3.4	22	75	10	66	46	0	2	51	1.15
42676561--42676712	36	4.5	33	83	6	119	41	1	1	55	1.19
42676566--42676621	23	2.4	25	80	17	66	42	0	0	57	0.99
42676606--42676651	22	2.1	21	84	11	58	39	0	2	58	1.10
42676586--42676720	36	3.9	34	85	8	168	40	1	1	56	1.17
42676689--42676753	21	3.0	21	80	17	80	44	1	0	53	1.09
42676714--42676772	27	2.1	27	84	6	73	49	1	0	49	1.11
42676752--42676789	13	3.0	13	88	3	60	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335