Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  99  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31537259--31537326
31
2.2
31
89
5
102
36
13
7
42
1.72
31539976--31540014
20
2.0
20
90
10
62
35
12
5
46
1.65
31541309--31541349
20
2.0
20
100
0
82
60
9
0
29
1.28
31541968--31542055
43
2.0
43
84
2
113
29
30
6
32
1.83
31546139--31546173
16
2.2
16
100
0
70
62
11
14
11
1.54
31549588--31549850
68
3.9
68
88
4
372
36
21
11
30
1.88
31549554--31549850
136
2.2
134
83
5
375
36
21
11
29
1.89
31550716--31550779
26
2.6
24
75
18
60
9
15
0
75
1.05
31550716--31550778
28
2.3
27
79
17
67
9
15
0
74
1.06
31550739--31550792
28
1.9
28
81
7
65
12
14
0
72
1.13
31551260--31551519
145
1.8
143
83
6
346
41
10
19
28
1.85
31556354--31556378
4
6.2
4
100
0
50
52
24
0
24
1.48
31556376--31556430
2
27.5
2
96
0
101
49
49
1
0
1.11
31556763--31556794
7
4.6
7
100
0
64
0
87
0
12
0.54
31557497--31557541
17
2.6
17
85
3
54
26
0
2
71
0.98
31557669--31557729
28
2.2
27
94
2
104
27
1
6
63
1.28
31558140--31558209
28
2.4
29
83
11
81
65
2
0
31
1.07
31559168--31559212
16
2.8
16
86
10
65
33
2
0
64
1.06
31566666--31566773
44
2.4
44
87
3
144
29
23
13
33
1.93
31573981--31574082
43
2.3
45
83
5
118
29
21
13
35
1.92
31575423--31575447
13
1.9
13
100
0
50
20
32
32
16
1.94
31577928--31577977
26
1.9
26
88
8
75
58
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31581286--31581312
5
5.4
5
100
0
54
22
18
40
18
1.91
31581681--31582006
154
2.1
153
93
1
564
57
5
7
29
1.49
31582517--31582571
18
3.1
18
80
20
62
16
12
1
69
1.28
31583768--31583795
2
14.0
2
100
0
56
50
0
0
50
1.00
31584443--31584476
2
17.0
2
100
0
68
50
0
0
50
1.00
31589397--31589445
25
2.0
25
83
0
62
38
0
16
44
1.48
31596944--31596972
15
1.9
15
100
0
58
27
6
13
51
1.66
31597781--31597826
23
2.0
23
84
12
60
45
10
6
36
1.65
31597788--31597832
23
2.0
23
82
8
56
40
13
8
37
1.76
31601855--31602039
92
2.0
92
97
0
352
35
13
15
35
1.87
31608199--31608253
21
2.5
22
82
2
67
20
32
30
16
1.94
31618032--31618112
40
2.0
40
92
0
135
35
11
18
34
1.86
31621070--31621115
21
2.2
21
81
11
51
30
4
4
60
1.35
31621312--31621434
42
2.9
42
78
8
151
30
23
17
28
1.97
31625794--31625836
21
2.0
21
100
0
86
53
4
0
41
1.21
31627176--31627286
41
2.7
40
77
4
114
27
21
13
37
1.91
31627450--31627485
8
4.6
8
96
3
65
25
0
8
66
1.19
31627450--31627527
7
10.6
7
79
9
68
21
5
3
69
1.25
31627450--31627519
15
4.7
14
82
7
50
21
4
4
70
1.23
31628179--31628209
6
5.2
6
92
0
53
48
0
51
0
1.00
31629043--31629081
17
2.2
18
86
4
53
10
0
30
58
1.31
31629154--31629306
41
3.8
41
89
0
209
20
23
19
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31629294--31629320
12
2.2
12
100
0
54
48
29
14
7
1.71
31630783--31630816
15
2.1
16
89
10
52
50
2
0
47
1.16
31631604--31631633
2
15.0
2
100
0
60
50
0
0
50
1.00
31633158--31633214
23
2.5
24
83
11
66
71
8
12
7
1.29
31633158--31633215
24
2.5
22
78
18
55
72
8
12
6
1.28
31634176--31634340
34
4.9
34
94
0
285
26
27
20
25
1.99
31636465--31636587
60
2.0
60
90
3
194
18
17
10
52
1.73
31636769--31636824
3
18.7
3
96
0
103
30
0
1
67
1.01
31642130--31642277
43
3.5
41
79
10
131
25
18
27
29
1.98
31642830--31642862
16
2.1
16
100
0
66
18
0
24
57
1.40
31644270--31644380
47
2.4
47
84
6
154
25
16
23
35
1.95
31648453--31648482
10
3.0
10
95
0
51
20
13
0
66
1.24
31657204--31657700
44
11.3
44
85
2
581
31
18
21
28
1.97
31658832--31658860
13
2.1
14
93
6
51
51
0
3
44
1.18
31660361--31660404
15
2.9
15
82
0
61
36
2
13
47
1.56
31660779--31660836
23
2.5
23
94
0
98
6
3
43
46
1.47
31660941--31660981
19
2.2
19
87
12
59
46
0
24
29
1.53
31660929--31660968
13
3.2
13
80
19
50
50
0
25
25
1.50
31669810--31669851
22
1.9
22
85
9
59
26
0
4
69
1.08
31670052--31670103
27
2.0
26
81
11
61
25
3
3
67
1.25
31670084--31670116
7
4.7
7
100
0
66
12
0
0
87
0.53
31670084--31670124
21
2.0
21
85
9
57
17
0
2
80
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31670164--31670188
6
4.2
6
100
0
50
68
0
0
32
0.90
31673921--31673960
20
2.0
20
90
9
64
20
7
2
70
1.24
31674870--31674902
12
2.8
12
95
0
57
27
9
0
63
1.24
31681156--31681187
16
2.0
16
100
0
64
37
25
6
31
1.81
31681696--31682025
131
2.5
128
86
5
459
28
17
19
34
1.94
31684565--31684701
53
2.6
53
89
2
195
28
27
16
27
1.97
31691561--31691711
53
2.8
53
89
4
214
29
27
16
25
1.97
31702656--31703479
176
4.7
176
81
6
720
32
20
23
23
1.98
31702658--31703469
89
9.2
88
78
3
799
32
20
23
23
1.98
31702658--31703482
265
3.1
263
84
2
960
32
20
24
23
1.98
31703418--31703510
44
2.1
44
82
9
118
31
26
19
22
1.98
31704160--31704205
18
2.8
16
81
12
65
73
6
0
19
1.04
31706571--31706901
130
2.6
128
87
6
472
27
18
20
33
1.96
31707489--31707563
38
2.0
37
94
5
134
29
6
5
58
1.46
31711731--31711786
23
2.4
24
82
14
64
30
0
10
58
1.32
31711890--31711932
22
2.0
22
90
0
68
32
6
11
48
1.66
31713168--31713199
2
16.5
2
93
6
57
50
0
0
50
1.00
31713335--31713361
5
5.4
5
100
0
54
81
0
0
18
0.69
31714727--31714792
30
2.2
30
83
5
80
42
0
4
53
1.21
31715246--31715278
13
2.4
14
90
5
50
84
6
9
0
0.76
31715320--31715349
11
2.6
11
94
5
51
10
6
3
80
1.01
31716284--31716313
2
15.5
2
93
6
53
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31718044--31718105
30
2.1
30
84
0
79
53
8
0
38
1.31
31719808--31719838
15
2.1
15
100
0
62
45
19
16
19
1.86
31723052--31723115
32
2.0
32
100
0
128
25
12
18
43
1.85
31724251--31724280
6
5.0
6
95
0
51
13
0
20
66
1.24
31725109--31725168
30
2.0
30
100
0
120
26
20
10
43
1.83
31736327--31736413
43
2.0
43
82
12
108
22
19
29
27
1.98
31739565--31739614
10
5.0
10
81
13
59
22
8
2
68
1.26
31739584--31739622
20
2.0
20
89
0
60
23
5
5
66
1.32
31740335--31740368
17
1.9
18
88
5
52
26
8
8
55
1.59
31741426--31741496
35
2.0
35
94
0
124
18
46
9
25
1.79
31741991--31742025
11
3.2
11
92
8
54
0
54
0
45
0.99
31742491--31742527
3
12.3
3
100
0
74
32
0
0
67
0.91
31742629--31742676
3
16.0
3
100
0
96
33
0
0
66
0.92
31742892--31742962
33
2.2
31
80
11
81
38
5
2
53
1.39
31755297--31755885
70
8.2
70
91
5
953
32
15
19
31
1.94
31755297--31757179
217
8.2
217
75
17
1353
29
16
20
33
1.95
31755936--31756088
54
3.0
52
84
10
208
28
16
20
34
1.95
31755941--31756088
48
2.9
51
84
10
205
27
16
20
34
1.95
31756108--31756136
14
2.0
15
93
6
51
13
13
6
65
1.45
31756052--31757218
163
7.5
161
85
9
1423
28
17
19
33
1.95
31756286--31756750
72
6.3
71
84
9
540
29
16
19
33
1.94
31756732--31756758
14
1.9
14
100
0
54
18
14
7
59
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31756052--31757263
622
1.9
623
96
1
2250
29
17
19
33
1.95
31756893--31756927
14
2.5
14
95
0
61
17
14
8
60
1.58
31756908--31757179
72
3.8
72
93
1
456
30
16
19
33
1.94
31758527--31758560
11
3.1
11
91
8
52
0
52
0
47
1.00
31759027--31759060
3
11.3
3
100
0
68
32
0
0
67
0.91
31759162--31759209
3
16.0
3
100
0
96
33
0
0
66
0.92
31759425--31759497
33
2.3
30
82
11
92
36
5
2
54
1.38
31765285--31765406
8
13.9
9
70
24
59
24
4
1
69
1.15
31765318--31765386
28
2.5
28
97
0
129
24
4
2
68
1.22
31765308--31765406
28
4.4
22
71
21
64
25
3
2
69
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335