Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  120  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36436991--36437020
2
15.0
2
100
0
60
50
0
0
50
1.00
36437167--36437233
14
4.7
14
87
3
89
38
14
5
40
1.71
36438581--36438606
3
8.7
3
100
0
52
30
0
0
69
0.89
36455893--36455936
21
2.0
23
86
8
65
54
2
0
43
1.12
36456100--36456128
2
14.5
2
100
0
58
48
0
0
51
1.00
36456148--36456215
36
2.0
33
85
8
91
48
2
1
47
1.26
36456707--36456754
26
1.9
25
83
8
62
31
8
4
56
1.48
36458254--36458298
22
2.0
22
82
4
54
46
0
0
53
1.00
36458376--36458434
23
2.5
22
76
15
57
47
1
0
50
1.11
36458420--36458476
15
3.6
15
74
21
62
50
1
0
47
1.11
36458394--36458474
14
5.5
14
69
23
51
50
1
0
48
1.08
36462509--36462534
13
2.0
13
100
0
52
38
0
7
53
1.30
36465883--36465962
41
2.0
41
87
0
115
22
18
25
33
1.97
36465885--36466018
66
2.0
66
84
5
173
23
16
24
35
1.94
36468472--36468526
27
2.0
27
96
0
101
29
9
14
47
1.75
36472126--36472165
6
6.3
6
83
11
53
77
0
2
20
0.88
36477718--36477808
44
2.1
44
91
4
148
50
9
9
29
1.68
36479558--36479684
42
3.0
42
85
6
161
29
25
14
30
1.95
36479643--36479766
47
2.7
46
86
2
167
29
27
16
27
1.97
36479791--36480000
31
6.8
31
90
5
327
27
26
19
26
1.99
36479976--36480104
50
2.5
51
87
5
190
25
22
16
35
1.94
36499169--36499257
40
2.3
38
90
3
133
13
14
34
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36506299--36506375
40
1.9
40
91
0
127
12
16
33
36
1.88
36508106--36508141
17
2.1
17
89
0
54
30
0
8
61
1.26
36508474--36508520
23
2.0
24
87
4
69
70
2
25
2
1.10
36509657--36509697
18
2.3
18
87
8
57
48
0
21
29
1.50
36510185--36510222
20
1.9
20
84
10
51
47
0
10
42
1.38
36510631--36510664
2
17.5
2
93
6
61
50
0
0
50
1.00
36518223--36518293
6
12.3
6
79
19
80
14
1
0
84
0.69
36518223--36518292
16
4.2
17
83
7
81
14
1
0
84
0.70
36518390--36518490
40
2.4
42
85
6
125
31
34
12
20
1.91
36519251--36519481
118
2.0
118
92
0
390
22
17
31
28
1.97
36522738--36522779
21
2.0
20
86
4
57
50
0
16
33
1.46
36523468--36523650
32
5.7
32
75
8
147
32
11
23
32
1.90
36523483--36523641
65
2.4
65
95
1
282
31
11
24
32
1.91
36523513--36523624
33
3.4
33
78
7
147
33
9
23
33
1.87
36523487--36523643
33
4.8
33
73
14
146
32
10
24
32
1.90
36527705--36527739
2
17.5
2
100
0
70
48
0
0
51
1.00
36528497--36528533
15
2.5
15
86
0
56
32
8
0
59
1.27
36540033--36540122
45
2.0
45
86
0
126
26
11
13
48
1.75
36540687--36541204
89
5.9
87
74
9
383
30
18
22
29
1.97
36540687--36541205
44
11.9
43
78
7
356
30
18
22
29
1.97
36540881--36541031
81
1.9
81
87
5
225
27
16
27
28
1.97
36541773--36541816
23
1.9
23
95
0
79
52
18
13
15
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36542022--36542050
2
14.5
2
100
0
58
48
0
0
51
1.00
36542860--36542889
12
2.5
12
88
0
51
26
6
0
66
1.16
36543033--36543121
44
2.0
44
97
0
169
34
2
6
56
1.38
36550026--36550077
22
2.2
22
80
16
52
42
5
3
48
1.45
36553467--36553518
16
3.3
15
79
10
59
51
3
5
38
1.44
36556324--36556375
26
2.0
26
85
7
70
44
1
3
50
1.31
36557881--36557972
44
2.1
44
81
4
105
22
22
21
32
1.98
36559296--36559324
14
2.1
14
100
0
58
37
0
20
41
1.53
36559617--36559676
29
2.1
29
100
0
120
30
10
23
36
1.87
36561736--36561778
21
2.0
21
95
0
77
37
4
6
51
1.50
36562297--36562331
2
17.5
2
100
0
70
51
0
0
48
1.00
36563179--36563239
3
20.3
3
96
0
113
32
1
0
65
1.02
36564493--36564548
26
2.2
25
81
6
67
53
0
0
46
1.00
36564494--36564666
61
2.9
60
75
15
178
52
3
1
42
1.25
36568947--36568992
22
2.1
22
83
0
56
54
10
6
28
1.60
36568957--36569000
22
2.0
22
95
0
79
47
13
2
36
1.56
36573811--36573886
19
3.8
19
77
19
68
42
0
3
53
1.19
36573828--36573886
22
2.9
21
82
12
70
42
0
5
52
1.23
36575064--36575109
3
15.3
3
100
0
92
67
0
0
32
0.91
36581785--36581846
21
3.0
21
95
0
106
53
20
12
12
1.72
36581815--36581949
42
3.2
42
78
4
130
42
18
19
20
1.90
36584949--36585049
25
4.0
25
86
0
130
21
24
17
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36584940--36585047
50
2.2
50
84
0
144
23
25
16
34
1.95
36585036--36585083
25
1.9
25
87
8
71
29
18
22
29
1.98
36586675--36586708
17
2.0
17
100
0
68
29
11
17
41
1.85
36594432--36594516
32
2.7
32
81
7
109
25
25
18
29
1.98
36599857--36599902
18
2.7
16
90
9
65
52
47
0
0
1.00
36599859--36599899
18
2.3
18
95
4
75
53
46
0
0
1.00
36602580--36602639
29
2.1
29
81
12
70
40
1
1
56
1.19
36602674--36602710
9
4.0
9
89
3
56
43
0
0
56
0.99
36602675--36602710
18
2.0
18
94
0
63
41
0
0
58
0.98
36602674--36602711
10
4.0
10
83
13
53
42
0
0
57
0.98
36605730--36605978
46
5.5
45
88
2
338
20
22
12
44
1.85
36605730--36605934
90
2.3
91
92
1
331
20
22
12
44
1.85
36605730--36605978
136
1.8
136
89
1
392
20
22
12
44
1.85
36605950--36606073
45
2.8
45
87
2
160
22
25
15
37
1.93
36605992--36606091
45
2.2
42
78
14
119
20
24
19
37
1.94
36606085--36606240
33
4.7
33
72
9
120
24
27
18
29
1.98
36607826--36607850
11
2.3
11
100
0
50
64
8
0
28
1.22
36608124--36608182
30
1.9
31
86
3
84
28
22
1
47
1.61
36613279--36613348
30
2.3
30
85
9
90
38
1
10
50
1.45
36613402--36613426
13
1.9
13
100
0
50
32
0
4
64
1.12
36616725--36616751
2
13.5
2
100
0
54
0
48
0
51
1.00
36620164--36620207
17
2.6
18
85
7
56
2
9
9
79
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36625048--36625086
2
19.5
2
94
0
69
51
0
2
46
1.14
36626369--36626447
37
2.2
38
81
6
92
37
10
1
50
1.44
36642477--36642536
29
2.0
31
80
6
70
60
8
5
26
1.47
36642809--36642847
16
2.4
16
82
0
51
64
2
0
33
1.08
36646976--36647084
26
4.2
26
96
1
184
33
5
24
35
1.79
36648700--36648812
27
4.2
27
85
3
129
16
23
23
36
1.94
36648698--36648812
54
2.1
54
88
3
169
16
23
23
36
1.94
36652774--36652882
26
4.2
26
96
1
184
33
5
24
35
1.79
36654494--36654608
27
4.3
26
84
7
140
17
23
22
36
1.95
36654494--36654608
54
2.1
54
87
3
160
17
23
22
36
1.95
36656209--36656244
10
3.6
10
100
0
72
61
0
11
27
1.30
36658189--36658254
27
2.5
26
75
20
64
78
0
7
13
0.94
36661104--36661142
10
3.9
10
86
0
60
66
2
10
20
1.33
36661104--36661141
20
1.9
20
94
0
67
65
2
10
21
1.35
36664755--36664794
21
1.9
21
85
10
55
65
7
12
15
1.47
36665975--36666032
28
2.0
29
83
9
75
36
3
0
60
1.14
36665971--36666032
31
2.1
29
85
11
81
37
3
0
59
1.13
36666140--36666177
2
19.0
2
94
0
67
52
0
0
47
1.00
36675792--36675963
93
1.9
91
88
2
263
27
18
18
35
1.94
36675896--36676171
78
3.5
77
83
7
331
33
16
19
30
1.94
36678259--36678316
28
2.0
29
83
9
75
36
3
0
60
1.14
36678308--36678366
24
2.5
23
81
15
59
28
5
1
64
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36678939--36678993
24
2.2
25
78
15
60
36
1
3
58
1.26
36679997--36680022
2
13.0
2
100
0
52
50
0
0
50
1.00
36680785--36680821
20
1.9
20
88
5
58
51
0
2
45
1.15
36681380--36681421
20
2.0
22
86
9
61
54
0
0
45
0.99
36681392--36681435
22
2.0
22
81
0
52
47
2
0
50
1.13
36682777--36682903
67
1.9
67
85
6
177
23
30
18
26
1.98
36683954--36684067
54
2.1
54
96
0
210
39
13
21
25
1.90
36692454--36692483
14
2.1
14
93
0
51
23
23
10
43
1.83
36697539--36697627
25
3.5
27
82
10
82
37
26
19
16
1.93
36697566--36697627
25
2.5
25
86
2
90
40
24
19
16
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335