genome.fa.s5.2.7.7.80.10.50.1000.327.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  327  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96047691--96047728	15	2.5	15	91	0	58	18	21	15	44	1.86
96056038--96056395	72	4.9	72	84	5	445	27	18	22	31	1.97
96058860--96058997	68	2.0	69	98	1	269	31	14	22	31	1.94
96060974--96061082	54	2.0	54	100	0	218	43	14	18	23	1.87
96066402--96066463	28	2.2	28	91	0	97	30	6	30	32	1.83
96067793--96067868	35	2.2	34	84	13	93	56	5	0	38	1.22
96070038--96070062	8	3.1	8	100	0	50	12	24	0	64	1.27
96078022--96078239	72	3.0	72	82	7	280	25	19	22	33	1.97
96078788--96078822	18	2.0	17	88	5	52	34	8	5	51	1.56
96080961--96081000	20	1.9	20	85	10	53	57	2	2	37	1.26
96088423--96088645	56	4.1	55	83	5	267	41	20	10	27	1.85
96088423--96088626	112	1.9	106	87	6	300	39	21	10	28	1.86
96093948--96093980	17	1.9	17	88	11	50	69	9	0	21	1.15
96101846--96101884	16	2.6	16	92	8	64	46	0	15	38	1.46
96101968--96102136	59	2.8	61	86	6	209	42	1	2	53	1.24
96102059--96102136	16	5.2	16	68	20	51	47	0	1	51	1.09
96102013--96102080	24	2.9	23	75	12	59	44	1	2	51	1.25
96103633--96103679	24	2.0	24	100	0	94	34	17	8	40	1.79
96103657--96103765	49	2.2	50	90	1	166	40	20	11	28	1.86
96103761--96103813	24	2.2	24	96	0	97	32	16	13	37	1.88
96109160--96109193	2	17.0	2	100	0	68	50	0	0	50	1.00
96109370--96109401	4	8.0	4	100	0	64	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96113275--96113315	20	2.0	20	90	0	64	34	7	9	48	1.64
96119904--96119955	19	2.7	20	76	8	63	50	0	0	50	1.00
96121835--96121870	2	18.0	2	100	0	72	50	0	0	50	1.00
96123637--96124134	126	4.0	126	96	0	890	24	21	18	34	1.96
96124256--96124328	19	3.8	19	78	7	67	45	20	2	31	1.65
96124396--96124464	21	3.3	21	87	0	111	47	36	0	15	1.46
96127413--96127485	34	2.4	27	73	26	83	34	17	13	34	1.90
96130173--96130238	20	3.0	20	80	10	69	71	4	3	21	1.18
96130198--96130244	14	3.3	14	79	11	51	74	2	2	21	1.03
96130256--96130323	9	7.6	9	88	0	82	27	8	19	44	1.80
96130256--96130323	27	2.5	27	87	0	91	27	8	19	44	1.80
96140093--96140198	53	2.0	53	96	0	194	47	17	10	24	1.79
96140093--96140177	29	3.1	29	61	27	67	47	17	11	23	1.81
96140188--96140223	2	18.0	2	100	0	72	50	0	0	50	1.00
96145994--96146056	31	2.0	31	96	0	117	26	25	12	34	1.92
96150675--96150725	21	2.5	20	81	9	66	27	39	1	31	1.68
96160553--96160614	23	2.7	21	79	16	70	8	14	1	75	1.10
96160561--96160611	23	2.2	23	89	3	75	5	13	1	78	1.02
96160559--96160625	32	2.1	32	81	13	75	5	16	2	74	1.14
96162504--96162669	53	3.1	53	85	9	205	26	15	28	30	1.96
96164730--96164769	19	2.1	19	100	0	80	25	10	25	40	1.86
96165593--96165627	11	3.2	11	95	0	61	25	0	2	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96169182--96169228	23	2.0	24	91	4	78	46	0	2	51	1.13
96169182--96169228	24	2.0	23	87	4	67	46	0	2	51	1.13
96169207--96169262	19	2.9	19	86	7	69	42	0	7	50	1.30
96169231--96169268	19	2.0	19	89	0	58	47	0	10	42	1.38
96169233--96169275	19	2.3	19	84	4	52	48	0	6	44	1.29
96176417--96176446	16	1.9	16	93	6	53	40	20	13	26	1.89
96176844--96176950	51	2.1	51	91	3	171	57	7	25	10	1.58
96176927--96176954	3	9.3	3	100	0	56	67	0	32	0	0.91
96192798--96192846	24	2.0	24	88	0	71	48	6	6	38	1.53
96193545--96193604	15	4.1	14	74	8	57	46	1	1	50	1.21
96201271--96201329	24	2.4	25	78	13	70	52	5	37	5	1.46
96201345--96201394	21	2.4	21	93	0	82	44	0	42	14	1.44
96202075--96202118	22	2.0	22	95	0	79	31	15	22	29	1.95
96203979--96204049	3	23.7	3	75	16	58	59	1	38	1	1.15
96203982--96204049	15	4.5	15	86	0	91	58	1	38	1	1.16
96203983--96204052	27	2.6	25	82	10	77	60	1	37	1	1.15
96207494--96207599	30	3.5	30	92	0	176	22	41	15	20	1.89
96211141--96211223	31	2.6	32	82	3	96	61	19	3	15	1.48
96219816--96219849	17	2.0	17	100	0	68	5	17	41	35	1.74
96231029--96231085	18	3.2	18	94	0	96	31	19	14	35	1.91
96233961--96234053	46	2.0	46	91	0	150	22	29	11	36	1.90
96234867--96234920	11	5.0	11	86	4	74	18	46	5	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96236018--96236047	14	2.2	13	94	5	51	83	0	3	13	0.77
96239124--96239315	41	4.7	41	90	1	287	33	25	21	19	1.97
96240055--96240096	22	1.9	22	90	0	66	19	7	33	40	1.78
96240149--96240197	24	2.0	24	84	7	64	57	0	4	38	1.18
96242481--96242527	23	2.0	23	95	0	85	21	19	10	48	1.78
96246333--96246509	50	3.5	50	87	2	239	36	16	20	26	1.94
96246487--96246725	92	2.6	92	93	1	397	29	20	25	24	1.99
96246487--96246717	31	7.5	31	90	0	347	29	20	25	23	1.99
96246724--96246752	7	4.1	7	100	0	58	44	13	27	13	1.82
96246756--96246881	47	2.7	47	82	2	146	30	15	25	28	1.95
96252002--96252429	43	10.0	42	81	5	421	26	21	23	29	1.99
96252002--96252438	85	5.1	85	83	3	459	26	20	22	30	1.99
96253431--96253469	20	2.0	20	85	10	53	30	0	0	69	0.89
96256171--96256644	216	2.2	216	90	2	720	26	19	21	31	1.97
96256171--96256644	72	6.6	72	86	2	648	26	19	21	31	1.97
96259161--96259204	19	2.2	20	92	4	72	43	0	9	47	1.35
96259156--96259193	19	2.2	17	86	13	51	55	0	7	36	1.29
96259226--96259261	15	2.4	15	95	0	54	55	0	0	44	0.99
96259201--96259261	15	4.1	14	79	14	52	57	1	1	39	1.18
96259318--96259371	21	2.5	22	85	11	69	59	1	1	37	1.19
96259326--96259417	35	2.6	33	79	20	107	58	1	1	39	1.12
96259384--96259433	13	3.8	13	75	19	50	56	2	0	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96259391--96259454	24	2.7	23	77	18	69	56	1	0	42	1.09
96262612--96263248	72	8.8	72	90	1	913	28	19	21	30	1.97
96265578--96265651	38	1.9	39	89	8	116	48	18	8	24	1.75
96265641--96265693	24	2.2	24	100	0	106	30	16	13	39	1.87
96268357--96268384	14	2.0	14	100	0	56	14	14	14	57	1.66
96270502--96270541	17	2.4	17	86	0	62	45	0	2	52	1.14
96273783--96273863	30	2.7	30	80	0	90	24	41	8	24	1.83
96278398--96278443	20	2.4	19	85	3	56	58	0	6	34	1.24
96280155--96280257	29	3.6	29	94	2	172	27	16	31	25	1.97
96290216--96290259	20	2.1	21	87	4	63	36	9	6	47	1.62
96297955--96297997	2	22.0	2	95	4	79	48	0	0	51	1.00
96306071--96306133	33	1.9	33	100	0	126	36	20	11	31	1.88
96319396--96319465	13	5.2	14	72	13	58	34	1	1	62	1.13
96319405--96319465	28	2.3	26	82	5	68	34	1	1	62	1.15
96326297--96326372	38	2.0	38	97	0	143	30	10	3	55	1.52
96337395--96337602	67	3.2	64	77	10	206	31	17	28	22	1.96
96337897--96338051	28	5.6	28	72	9	129	30	15	28	25	1.96
96337903--96338056	54	2.8	55	82	4	195	31	15	27	25	1.96
96337976--96338084	28	3.9	27	79	7	103	32	19	25	22	1.97
96337898--96338076	56	3.2	55	77	10	195	30	16	27	25	1.97
96342244--96342445	55	3.8	52	77	12	194	34	17	24	23	1.96
96342243--96342443	108	1.8	110	87	4	300	34	17	24	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96344274--96344450	47	3.8	47	75	12	184	22	19	27	30	1.98
96352750--96353004	55	4.8	53	79	8	227	21	25	16	36	1.94
96352797--96352997	108	1.8	110	88	2	307	23	25	16	34	1.95
96359612--96359645	17	2.0	17	94	0	59	26	2	0	70	1.01
96359631--96359674	18	2.3	20	88	7	65	34	0	9	56	1.31
96359674--96359719	15	3.1	15	84	6	58	47	0	0	52	1.00
96359674--96359712	14	2.7	14	88	4	51	43	0	0	56	0.99
96361026--96361058	2	16.5	2	100	0	66	51	0	0	48	1.00
96366548--96366589	7	5.9	7	97	2	75	69	16	0	14	1.20
96369717--96369786	34	2.1	34	94	0	122	44	24	8	22	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335