Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  304  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90349202--90349285
26
3.2
26
96
0
150
36
25
4
33
1.77
90352129--90352172
5
8.8
5
100
0
88
81
0
0
18
0.68
90354277--90354572
86
3.4
85
81
2
340
27
18
7
45
1.77
90355262--90355302
18
2.5
16
82
17
57
70
0
9
19
1.14
90355266--90355300
18
1.9
18
94
0
61
71
0
8
20
1.11
90357428--90357453
10
2.6
10
100
0
52
38
19
11
30
1.87
90359222--90359549
182
1.8
181
88
4
500
28
21
29
20
1.98
90359923--90359952
10
3.0
10
90
0
51
0
33
0
66
0.92
90359923--90359962
20
2.0
21
90
5
64
0
35
0
65
0.93
90360129--90360174
18
2.6
18
80
13
58
17
13
2
67
1.33
90360452--90360476
3
8.3
3
100
0
50
36
0
0
64
0.94
90362437--90362465
5
5.8
5
100
0
58
79
0
0
20
0.74
90368306--90368352
21
2.4
19
82
10
58
27
2
23
46
1.63
90372173--90372326
40
3.9
40
92
1
238
21
21
28
28
1.99
90372173--90372326
79
1.9
80
90
1
247
21
21
28
28
1.99
90372321--90372452
43
3.0
44
80
2
158
13
21
29
35
1.92
90372583--90372637
25
2.2
25
87
6
76
29
10
30
29
1.91
90372649--90372802
28
5.5
28
69
6
123
18
18
34
28
1.95
90372620--90372802
56
3.3
56
93
0
321
18
19
33
28
1.95
90374861--90375031
75
2.4
75
84
7
212
32
11
23
33
1.90
90374864--90375029
35
4.6
35
84
8
174
31
11
23
33
1.90
90376558--90376604
21
2.4
19
82
10
58
27
2
23
46
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90379830--90379870
21
1.9
22
90
5
66
70
0
0
29
0.87
90379948--90380027
25
3.3
24
71
11
74
67
3
3
25
1.24
90389321--90389370
25
2.0
25
84
7
66
58
2
2
38
1.21
90390720--90390755
14
2.5
15
86
13
58
75
0
5
19
1.00
90390714--90390753
14
2.7
15
88
7
55
77
0
7
15
0.98
90399098--90399164
33
2.0
33
100
0
134
38
16
17
26
1.91
90400837--90400889
28
1.9
27
84
3
70
26
26
18
28
1.98
90400851--90400949
28
3.4
28
69
20
85
25
28
21
25
1.99
90400851--90400985
60
2.2
60
83
11
170
25
25
20
27
1.99
90403103--90403145
19
2.4
18
84
7
52
41
9
0
48
1.35
90405077--90405175
28
3.4
28
70
20
85
26
28
20
25
1.99
90405077--90405211
60
2.2
59
84
8
166
26
25
20
27
1.99
90407326--90407369
19
2.4
18
85
7
54
40
9
0
50
1.34
90409390--90409427
18
2.1
18
85
9
51
36
7
0
55
1.29
90413591--90413619
14
2.0
15
93
6
51
41
10
13
34
1.79
90422865--90422890
2
13.0
2
100
0
52
50
0
0
50
1.00
90428548--90428595
24
2.0
24
100
0
96
29
25
4
41
1.74
90428620--90428652
13
2.6
13
90
4
50
48
12
0
39
1.40
90443209--90443382
46
3.8
45
77
10
138
23
26
19
30
1.98
90447529--90447571
20
2.2
20
87
8
61
69
4
25
0
1.07
90456022--90456047
13
2.0
13
100
0
52
76
0
0
23
0.78
90456024--90456067
17
2.6
17
89
7
63
75
0
0
25
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90456025--90456084
4
13.8
4
75
20
50
71
1
3
23
1.10
90456230--90456282
13
4.0
13
79
15
56
62
0
35
1
1.06
90456226--90456282
28
2.0
28
83
6
71
61
0
36
1
1.07
90459203--90459247
18
2.5
18
92
0
72
40
13
2
44
1.56
90460410--90460467
29
2.0
29
96
0
107
43
0
6
50
1.29
90460719--90460758
9
4.8
9
79
14
50
42
0
0
57
0.98
90460711--90460758
17
2.9
17
82
14
64
39
0
0
60
0.97
90471715--90471774
29
2.1
29
100
0
120
40
13
6
40
1.71
90485159--90485209
25
2.1
24
82
13
61
23
5
5
64
1.38
90489083--90489127
2
23.0
2
95
4
83
48
0
0
51
1.00
90491069--90491200
54
2.4
54
98
0
255
27
18
22
31
1.98
90491235--90491418
46
4.0
46
92
0
296
38
16
23
21
1.93
90491250--90491466
46
4.6
46
87
5
240
40
16
23
20
1.91
90507794--90507834
21
2.0
21
90
0
64
29
21
29
19
1.98
90523052--90523080
14
2.0
15
93
6
51
41
10
13
34
1.79
90538339--90538435
6
16.3
6
83
14
114
17
2
0
80
0.81
90538374--90538447
36
2.0
37
84
5
96
22
2
1
72
1.04
90539349--90539576
116
2.0
117
93
0
395
25
17
28
28
1.97
90539378--90539660
116
2.5
113
83
6
331
24
17
29
28
1.97
90539703--90539753
20
2.7
20
87
6
79
86
0
13
0
0.58
90539707--90539753
11
4.5
11
84
7
62
85
0
14
0
0.61
90540376--90540423
20
2.5
20
86
3
62
27
4
4
64
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90544899--90544956
29
2.0
29
96
0
107
43
0
6
50
1.29
90545200--90545247
17
2.9
17
82
14
64
37
0
2
60
1.09
90545345--90545396
19
2.5
21
73
20
56
55
1
0
42
1.10
90558700--90558743
20
2.3
20
80
7
56
50
4
0
45
1.22
90558766--90558806
21
2.0
20
85
4
55
65
9
0
24
1.22
90560419--90560471
26
2.0
26
82
7
63
26
15
20
37
1.92
90561957--90562064
26
4.2
26
85
4
155
37
22
6
34
1.80
90561957--90562064
52
2.1
52
91
0
171
37
22
6
34
1.80
90568007--90568276
134
2.0
134
79
2
292
34
16
16
32
1.91
90568490--90568556
3
22.3
3
93
0
116
64
1
1
32
1.12
90568731--90568875
3
48.7
3
67
16
52
63
6
6
24
1.41
90570306--90570548
44
5.5
44
75
10
196
24
25
17
32
1.97
90570689--90571597
205
4.4
206
91
2
1364
30
21
17
31
1.96
90579534--90579803
134
2.0
134
80
2
301
34
16
17
31
1.92
90579548--90579803
133
1.9
134
80
3
291
33
16
16
32
1.92
90580017--90580071
3
18.3
3
92
0
92
63
1
1
32
1.15
90580245--90580389
3
48.7
3
67
16
52
63
6
6
24
1.41
90592236--90592309
25
2.9
25
74
23
66
16
5
0
78
0.93
90592247--90592303
20
2.7
21
84
13
64
17
5
0
77
0.95
90592248--90592310
22
2.9
24
78
21
77
17
4
0
77
0.93
90592240--90592309
29
2.5
28
75
17
74
17
4
0
78
0.90
90593172--90593384
118
1.8
118
95
0
390
22
17
31
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90593538--90593568
12
2.6
12
94
0
53
90
0
9
0
0.46
90596132--90596185
24
2.3
23
79
14
58
35
0
0
64
0.94
90596152--90596201
16
3.1
16
80
13
50
34
2
2
62
1.18
90597563--90597600
20
1.9
20
88
0
58
13
28
15
42
1.85
90601898--90601947
20
2.4
21
83
6
66
26
12
22
40
1.88
90609360--90609414
18
3.2
17
78
14
60
43
0
1
54
1.10
90609359--90609414
17
3.2
18
80
7
62
42
0
1
55
1.10
90609387--90609422
18
2.0
17
89
10
54
36
0
5
58
1.22
90615447--90615506
27
2.2
26
83
13
77
63
0
36
0
0.95
90615475--90615513
17
2.3
17
86
13
62
64
0
35
0
0.94
90615419--90615533
43
2.6
43
81
13
112
58
0
40
0
1.04
90615502--90615554
22
2.5
21
80
14
56
64
1
33
0
1.05
90615526--90615572
20
2.3
20
82
7
60
72
2
25
0
0.96
90615455--90615571
27
4.5
26
74
13
82
64
1
34
0
1.04
90619363--90619407
16
2.8
17
80
12
51
68
0
0
31
0.89
90619426--90619475
21
2.5
20
78
18
59
54
0
4
42
1.19
90619727--90619768
22
1.9
22
100
0
84
16
21
23
38
1.93
90621460--90621603
21
6.3
22
72
18
84
62
2
8
27
1.35
90621470--90621581
24
4.7
24
76
19
119
61
2
8
26
1.39
90621495--90621650
46
3.4
44
87
7
195
60
1
9
28
1.36
90621468--90621691
118
1.9
117
80
8
258
62
1
10
25
1.35
90621526--90621672
21
6.1
25
70
23
86
61
0
9
27
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90622052--90622093
15
2.9
15
85
3
50
14
50
14
21
1.78
90623047--90623275
3
76.0
3
69
13
80
27
6
4
61
1.40
90623323--90623352
2
15.0
2
100
0
60
50
0
0
50
1.00
90623521--90623562
7
6.0
7
79
20
52
28
4
0
66
1.12
90623534--90623678
3
48.0
3
72
14
102
31
4
2
61
1.31
90625080--90625209
6
22.5
6
75
12
62
64
0
11
23
1.31
90625104--90625140
16
2.2
17
95
4
67
62
0
10
27
1.28
90625163--90625190
10
2.8
10
100
0
56
64
0
17
17
1.30
90625427--90625556
49
2.7
48
81
4
145
26
23
13
36
1.91
90627668--90627722
19
2.9
18
73
7
56
52
0
20
27
1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335