Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  96  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30805847--30805887
19
2.1
20
90
4
66
39
7
17
36
1.77
30810161--30810208
24
2.0
24
84
12
62
35
29
4
31
1.76
30812654--30812696
16
2.8
16
83
13
54
46
0
51
2
1.13
30814758--30814791
18
1.9
18
88
5
52
61
11
0
26
1.30
30818367--30818434
31
2.2
32
91
2
111
50
8
14
26
1.72
30818408--30818463
28
2.0
28
86
6
78
58
7
14
19
1.58
30819901--30819929
2
14.5
2
100
0
58
48
0
0
51
1.00
30822291--30822340
25
2.0
25
96
0
91
26
16
26
32
1.96
30825190--30825216
4
6.8
4
100
0
54
22
0
0
77
0.76
30825311--30825339
3
9.7
3
100
0
58
34
31
0
34
1.58
30832465--30832507
23
2.0
21
86
9
59
44
11
18
25
1.84
30834195--30834328
44
3.0
45
81
4
144
35
14
23
26
1.94
30839165--30839216
26
2.0
26
100
0
104
15
11
19
53
1.71
30841578--30841711
44
3.0
45
81
4
144
35
14
23
26
1.94
30845396--30845733
50
7.1
48
75
8
207
31
16
19
31
1.95
30845413--30845641
94
2.4
94
85
0
305
30
17
20
31
1.96
30845465--30845765
44
6.6
44
74
9
212
31
18
18
30
1.96
30845465--30845752
137
2.1
138
84
3
375
31
19
18
30
1.96
30845600--30845798
93
2.1
93
80
4
222
34
18
17
30
1.93
30845723--30845875
79
1.9
78
88
3
227
36
16
18
27
1.93
30845902--30846046
44
3.3
44
76
5
150
34
15
21
28
1.94
30847677--30847701
3
8.3
3
100
0
50
32
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30858020--30858099
38
2.1
38
90
0
124
20
22
28
28
1.98
30858071--30858259
43
4.4
43
87
1
256
12
22
33
31
1.91
30859813--30859881
32
2.2
32
84
2
86
36
11
5
46
1.64
30861931--30862023
39
2.4
39
94
1
159
36
20
5
37
1.76
30863322--30863381
31
1.9
31
83
6
77
48
5
6
40
1.51
30865872--30865916
19
2.5
17
80
13
54
42
0
0
57
0.98
30869299--30869338
19
2.1
19
100
0
80
52
0
42
5
1.23
30872251--30872326
25
3.0
25
73
17
68
43
3
1
51
1.28
30874545--30874576
7
4.7
7
92
7
57
75
0
0
25
0.81
30875439--30875492
19
3.1
17
77
17
58
38
3
5
51
1.43
30875442--30875493
17
3.1
16
78
16
52
38
3
3
53
1.37
30875765--30875801
18
2.1
18
89
0
56
40
2
5
51
1.39
30875783--30875834
23
2.2
24
86
6
72
34
5
3
55
1.42
30875793--30875885
36
2.6
36
77
8
100
33
6
4
55
1.45
30876012--30876065
28
2.0
27
85
3
72
38
7
1
51
1.41
30876343--30876450
9
11.7
9
70
18
53
37
1
6
54
1.37
30876406--30876468
13
4.9
13
78
17
62
38
1
6
53
1.36
30876414--30876453
15
2.7
15
92
0
71
40
2
5
52
1.37
30880255--30880310
22
2.5
23
82
5
78
25
23
3
48
1.67
30880289--30880317
4
7.2
4
100
0
58
24
24
0
51
1.48
30888624--30888923
74
4.0
74
84
8
331
31
16
20
32
1.94
30890824--30890895
3
25.0
3
73
10
53
30
5
1
62
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30890857--30890906
20
2.4
21
83
6
66
32
2
4
62
1.25
30891434--30891488
25
2.1
28
83
10
71
38
5
3
52
1.42
30891459--30891510
23
2.2
24
86
6
72
34
5
3
55
1.42
30891469--30891561
36
2.6
36
77
8
100
33
6
4
55
1.45
30891973--30892035
23
3.2
20
79
18
62
34
3
7
53
1.46
30892088--30892127
15
2.7
15
96
0
71
40
2
5
52
1.37
30896836--30896903
33
2.0
34
97
2
129
58
2
8
29
1.43
30900307--30900349
15
2.8
15
89
3
59
37
4
0
58
1.19
30900371--30900419
17
3.0
16
82
11
64
32
0
10
57
1.32
30900378--30900417
15
2.6
15
84
4
53
32
0
7
60
1.25
30900463--30900539
24
3.2
24
72
15
70
37
7
2
51
1.45
30913495--30914141
251
2.5
250
86
6
860
28
16
19
34
1.94
30914008--30914220
73
2.9
74
80
7
245
25
16
21
36
1.94
30914149--30914360
84
2.5
84
83
8
250
33
16
18
31
1.94
30914149--30914386
89
2.7
86
80
8
270
31
18
18
31
1.95
30916221--30916263
15
2.8
15
89
3
59
37
4
0
58
1.19
30916285--30916333
17
3.0
16
82
11
64
32
0
10
57
1.32
30916292--30916331
15
2.6
15
84
4
53
32
0
7
60
1.25
30922098--30922133
2
18.0
2
100
0
72
50
0
0
50
1.00
30923954--30923987
2
17.0
2
100
0
68
50
0
0
50
1.00
30926642--30926747
54
2.0
54
92
0
176
30
26
21
21
1.99
30926780--30926809
3
10.3
3
92
7
53
70
0
30
0
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30926811--30926880
36
1.9
36
94
0
122
32
15
27
24
1.95
30933074--30933135
29
2.1
28
82
8
70
46
4
1
46
1.33
30935360--30935395
4
9.0
4
87
0
54
22
2
27
47
1.65
30935388--30935446
28
2.1
28
100
0
118
38
13
6
40
1.71
30941841--30941866
2
13.0
2
100
0
52
50
0
0
50
1.00
30943739--30943788
24
2.1
24
92
0
82
24
40
12
24
1.88
30943798--30943826
15
1.9
15
100
0
58
13
65
13
6
1.45
30943799--30943833
15
2.3
15
90
0
52
17
65
8
8
1.44
30943865--30943974
36
3.1
35
86
5
157
25
44
11
18
1.83
30943897--30943950
12
4.5
12
76
0
54
29
44
9
16
1.79
30943979--30944055
24
3.2
24
83
0
91
15
67
0
16
1.23
30944018--30944053
6
6.0
6
100
0
72
16
66
0
16
1.25
30943983--30944052
18
3.9
18
78
0
59
17
70
0
12
1.18
30944141--30944181
15
2.7
15
84
0
55
14
65
2
17
1.37
30944150--30944184
18
1.9
18
88
0
52
17
62
0
20
1.32
30950594--30950620
13
2.1
13
100
0
54
48
7
22
22
1.75
30952045--30952092
4
12.0
4
81
16
55
22
2
2
72
1.05
30963956--30964151
44
4.4
44
76
8
132
29
19
23
27
1.98
30964028--30964196
89
1.9
89
85
7
236
29
17
24
28
1.97
30965189--30965215
13
2.1
13
100
0
54
48
7
22
22
1.75
30965270--30965295
9
2.9
9
100
0
52
11
0
0
88
0.52
30970807--30970941
26
5.2
26
91
1
218
33
4
25
37
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30970807--30970941
52
2.6
51
96
1
243
33
4
25
37
1.76
30972721--30972996
137
2.0
137
98
0
534
25
19
23
31
1.98
30974654--30974680
13
2.1
13
100
0
54
48
7
22
22
1.75
30976066--30976113
4
12.0
4
81
16
55
22
2
2
72
1.05
30976066--30976116
11
4.5
11
75
15
50
23
1
1
72
1.05
30977014--30977040
14
1.9
14
100
0
54
51
0
0
48
1.00
30977732--30977798
34
2.0
34
88
5
100
17
23
23
34
1.96
30980247--30980318
33
2.2
32
81
11
85
63
1
8
26
1.30
30981628--30981684
29
2.0
29
96
0
105
35
17
12
35
1.87
30982606--30982645
21
1.9
22
90
10
66
82
7
2
7
0.92
30982604--30982651
21
2.3
20
83
16
62
83
6
2
8
0.88
30985740--30985773
14
2.4
14
90
0
50
17
0
5
76
0.98
30987260--30987300
9
4.7
9
84
6
57
53
4
0
41
1.22
30987291--30987323
17
1.9
17
93
0
57
39
6
0
54
1.25
30989900--30989949
24
2.1
24
92
0
82
22
42
14
22
1.88
30990026--30990099
36
2.1
36
94
0
130
25
47
12
14
1.79
30990103--30990165
23
2.7
24
80
9
67
14
61
1
22
1.41
31007170--31007200
14
2.2
14
94
0
53
48
12
0
38
1.42
31019940--31020004
28
2.3
28
91
0
103
32
27
7
32
1.85
31020110--31020199
27
3.2
28
78
7
103
20
23
24
32
1.98
31020120--31020210
27
3.2
28
79
4
85
21
25
20
31
1.98
31023567--31023615
19
2.8
18
79
11
57
10
4
4
81
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31029749--31029788
18
2.2
19
86
13
57
70
0
10
20
1.16
31030668--31030715
15
3.1
16
83
16
57
70
2
0
27
0.98
31030659--31030729
11
6.5
11
76
12
58
66
2
1
29
1.15
31031695--31031749
28
2.0
27
82
3
65
45
16
7
30
1.74
31031784--31031828
18
2.5
18
78
10
56
42
15
4
37
1.67
31031721--31031828
36
3.0
36
78
1
101
39
13
8
37
1.75
31031879--31031925
18
2.6
19
75
21
55
63
2
4
29
1.25
31034425--31034542
56
2.1
56
92
4
195
64
11
0
23
1.27
31035018--31035085
18
3.7
19
80
5
77
47
14
7
30
1.72
31036607--31036648
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335