Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  141  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41368741--41368942
80
2.5
79
88
7
284
26
28
23
21
1.99
41376119--41376175
21
2.7
22
79
17
59
54
1
1
42
1.21
41381376--41381416
11
3.5
12
78
15
50
26
0
0
73
0.84
41384307--41384335
14
2.1
14
100
0
58
41
0
6
51
1.28
41384278--41384445
62
2.7
62
94
0
300
47
10
5
36
1.63
41388272--41388302
16
1.9
16
93
0
53
48
3
0
48
1.17
41395746--41395802
28
2.0
28
96
0
105
49
5
15
29
1.67
41397505--41397607
42
2.4
43
74
6
102
31
16
22
30
1.96
41399639--41399745
26
4.2
26
93
1
189
31
5
26
36
1.80
41402507--41402614
26
4.2
26
93
0
189
32
6
25
36
1.81
41409353--41409460
26
4.2
26
95
0
198
31
6
25
36
1.82
41411822--41411851
3
10.0
3
100
0
60
66
0
0
33
0.92
41419122--41419157
17
2.1
17
100
0
72
52
0
36
11
1.37
41427301--41427356
16
3.6
16
85
2
78
42
7
23
26
1.79
41427333--41427425
44
2.1
44
84
8
116
31
4
26
37
1.76
41437238--41437507
148
1.8
148
90
0
432
25
6
18
49
1.71
41442111--41442245
40
3.4
40
96
0
252
21
20
29
28
1.98
41442111--41442269
80
2.0
80
87
0
228
23
21
27
27
1.99
41443752--41443874
48
2.6
48
93
0
210
24
26
19
30
1.98
41449005--41449043
19
2.1
19
95
0
69
15
15
17
51
1.77
41449381--41449478
47
2.1
47
84
3
126
41
21
9
27
1.83
41451849--41451909
20
3.0
20
78
21
81
29
6
4
59
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41452197--41452227
2
15.5
2
100
0
62
48
0
0
51
1.00
41457015--41457046
9
3.4
9
95
4
55
9
9
12
68
1.39
41458097--41458477
140
2.8
135
81
8
432
24
9
12
53
1.68
41458570--41458603
16
2.2
16
89
5
52
23
2
0
73
0.97
41466218--41466303
44
2.0
44
84
9
113
36
13
25
24
1.93
41466494--41466690
54
3.6
54
82
4
236
36
17
24
20
1.94
41475909--41475966
29
2.0
29
96
0
107
32
27
15
24
1.95
41477914--41477946
17
2.0
17
94
5
59
36
15
0
48
1.45
41478232--41478551
46
7.0
47
87
3
377
21
22
14
41
1.89
41478232--41478544
92
3.4
92
88
0
430
21
23
14
41
1.89
41478242--41478551
138
2.2
138
86
2
426
21
22
13
41
1.89
41493386--41493477
40
2.4
39
87
3
123
15
13
34
36
1.86
41494411--41494436
13
2.0
13
100
0
52
76
0
23
0
0.78
41497197--41497295
49
2.0
49
100
0
198
30
22
18
29
1.97
41497308--41497399
21
4.4
21
98
0
175
39
19
27
14
1.90
41500193--41500250
26
2.1
29
78
15
70
48
0
1
50
1.11
41501567--41501610
3
14.7
3
81
9
54
29
6
0
63
1.20
41501567--41501624
15
3.8
15
80
15
66
31
6
0
62
1.22
41503318--41503361
22
2.0
22
100
0
88
40
27
9
22
1.84
41511977--41512014
7
5.0
8
81
12
53
65
0
0
34
0.93
41511971--41512014
15
2.9
15
86
0
70
68
0
0
31
0.90
41512004--41512038
12
2.9
12
86
0
52
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41516435--41516537
37
2.8
37
93
0
170
24
30
20
25
1.99
41516678--41518303
48
33.9
48
96
0
2892
30
27
6
35
1.82
41518277--41518324
22
2.2
22
96
0
87
25
33
14
27
1.94
41519419--41519444
2
13.0
2
100
0
52
50
0
0
50
1.00
41522516--41522571
23
2.5
22
76
2
58
51
1
3
42
1.29
41523507--41523569
18
3.4
19
82
8
67
65
3
3
28
1.24
41523900--41523959
27
2.1
27
84
9
75
26
0
5
68
1.10
41526394--41526420
13
2.1
13
100
0
54
29
0
7
62
1.22
41532617--41532649
2
16.5
2
100
0
66
51
0
0
48
1.00
41532802--41532833
14
2.3
15
89
10
50
78
6
6
9
1.10
41539277--41539578
132
2.3
131
78
5
331
29
18
15
36
1.92
41546449--41546481
2
16.5
2
93
0
57
48
0
0
51
1.00
41546745--41546769
7
3.6
7
100
0
50
44
16
16
24
1.86
41547419--41547459
3
13.7
3
94
0
73
29
0
2
68
1.03
41552407--41552455
22
2.2
22
88
0
71
34
24
22
18
1.96
41552756--41552788
14
2.3
15
94
5
59
15
27
6
51
1.66
41558263--41558295
2
16.5
2
100
0
66
51
0
0
48
1.00
41558351--41558382
13
2.5
13
100
0
64
43
21
9
25
1.82
41560261--41560295
17
2.1
17
89
5
54
65
0
8
25
1.21
41562073--41563041
206
4.7
206
89
0
1418
28
22
18
30
1.97
41563913--41563956
22
2.0
22
82
8
54
2
29
0
68
1.02
41575005--41575058
20
2.6
21
79
8
56
57
0
3
38
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41576822--41576848
8
3.4
8
100
0
54
51
14
0
33
1.43
41578179--41578236
28
2.1
28
93
0
98
15
15
15
53
1.73
41587279--41587445
40
4.2
41
80
5
164
24
26
22
26
2.00
41588270--41588315
17
2.5
19
74
22
53
34
23
17
23
1.96
41595286--41595452
40
4.2
40
81
2
176
23
26
22
26
2.00
41596271--41596316
17
2.5
19
74
22
53
34
23
17
23
1.96
41596789--41596819
8
4.0
8
91
8
55
0
9
0
90
0.46
41596790--41596819
15
2.0
15
93
0
51
0
10
0
90
0.47
41598449--41598473
12
2.1
12
100
0
50
40
0
0
60
0.97
41600468--41600518
24
2.0
25
85
7
68
25
13
23
37
1.92
41601999--41602079
26
3.2
26
98
1
155
35
25
7
30
1.84
41607494--41607545
25
2.0
26
82
10
63
25
13
23
38
1.91
41609010--41609091
26
3.2
26
100
0
164
35
26
7
30
1.84
41612910--41612973
21
3.0
22
72
9
69
35
23
20
20
1.96
41613922--41613980
7
8.4
7
100
0
118
57
0
0
42
0.98
41614406--41614455
23
2.2
23
86
10
68
54
2
0
44
1.11
41614585--41614631
19
2.4
19
76
20
51
36
23
4
36
1.75
41615817--41615852
4
9.5
4
93
6
58
25
0
0
75
0.81
41615818--41615863
18
2.6
18
96
0
83
26
2
0
71
0.97
41615817--41615855
14
2.6
15
88
12
62
25
0
0
74
0.82
41615992--41616101
3
36.7
3
92
0
184
32
3
0
63
1.12
41619048--41619100
14
3.9
14
76
11
56
60
3
1
33
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41619044--41619106
33
2.0
33
81
12
78
57
4
1
36
1.30
41633704--41633859
65
2.4
66
80
3
163
30
16
25
28
1.96
41633704--41633860
33
4.8
33
74
3
129
29
15
25
28
1.96
41636533--41636572
2
20.0
2
100
0
80
50
0
0
50
1.00
41652728--41652758
5
6.2
5
100
0
62
58
0
41
0
0.98
41653157--41653189
17
2.0
17
88
5
50
51
0
0
48
1.00
41653370--41653403
14
2.4
14
85
0
50
58
0
0
41
0.98
41654641--41654678
2
19.0
2
100
0
76
50
0
0
50
1.00
41656831--41656875
21
2.1
21
83
0
54
53
20
4
22
1.63
41658806--41658834
13
2.1
14
93
6
51
0
24
0
75
0.80
41668132--41668179
20
2.4
21
82
10
64
68
6
2
22
1.23
41671906--41671976
8
9.4
8
75
16
62
29
0
2
67
1.05
41671902--41671989
7
12.3
7
76
9
88
30
0
2
67
1.03
41672847--41672994
41
3.6
41
85
0
197
24
22
20
32
1.98
41672847--41673028
82
2.2
83
84
1
224
23
23
19
34
1.97
41672847--41673028
41
4.4
40
83
4
186
23
23
19
34
1.97
41672846--41673052
41
5.0
41
81
5
177
23
23
19
33
1.97
41680366--41680390
3
8.3
3
100
0
50
0
32
0
68
0.90
41683307--41683507
46
4.4
45
72
13
108
24
27
18
29
1.98
41686454--41686523
27
2.6
27
86
2
95
30
25
15
28
1.96
41691968--41692024
16
3.4
16
69
9
51
19
22
19
38
1.93
41691999--41692221
46
4.9
46
93
1
342
19
23
14
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41695268--41695310
20
2.2
20
95
0
77
0
18
27
53
1.45
41697167--41697191
11
2.3
11
100
0
50
8
28
24
40
1.83
41697525--41697789
46
5.7
46
78
11
242
23
30
20
25
1.98
41697526--41697797
94
2.9
92
79
11
306
23
30
20
25
1.98
41700133--41700209
10
8.4
9
78
11
52
77
2
3
15
1.02
41700140--41700203
27
2.4
26
76
7
67
76
3
3
17
1.04
41700154--41700203
4
12.8
4
77
12
50
76
2
4
18
1.04
41700175--41700207
12
2.8
12
90
0
57
75
0
6
18
1.00
41701985--41702020
13
2.6
14
91
8
56
61
13
13
11
1.58
41705756--41705788
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335